Construct: ORF ccsbBroad304_15672

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009697.1_s304c1, BRDN0000405383
Derived from:
ccsbBroadEn_15672
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBM39 (9584)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15672
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9584 RBM39 RNA binding motif protein 39 NM_001242599.2 100% 100%
2 human 9584 RBM39 RNA binding motif protein 39 NM_001242600.2 98.8% 98.8% 1106_1107insAGAATTCTCTTTTGTTAT
3 human 9584 RBM39 RNA binding motif protein 39 NM_001323424.2 96% 96% 298_360del
4 human 9584 RBM39 RNA binding motif protein 39 NM_184234.3 95.8% 95.8% 297_362del
5 human 9584 RBM39 RNA binding motif protein 39 NM_004902.4 94.7% 94.7% 297_362del;1172_1173insAGAATTCTCTTTTGTTAT
6 human 9584 RBM39 RNA binding motif protein 39 XM_017028138.2 93.7% 93.7% 1029_1030ins96
7 human 9584 RBM39 RNA binding motif protein 39 NM_001323422.2 89.8% 89.8% 297_362del;1095_1096ins96
8 human 9584 RBM39 RNA binding motif protein 39 NM_001323423.2 73.4% 73.4% 0_1ins405
9 human 9584 RBM39 RNA binding motif protein 39 XM_006723890.4 73.4% 73.4% 0_1ins405
10 human 9584 RBM39 RNA binding motif protein 39 XM_006723891.4 73.4% 73.4% 0_1ins405
11 human 9584 RBM39 RNA binding motif protein 39 XM_011529111.3 73.4% 73.4% 0_1ins405
12 human 9584 RBM39 RNA binding motif protein 39 XM_017028139.2 73.4% 73.4% 0_1ins405
13 human 9584 RBM39 RNA binding motif protein 39 XM_017028140.2 73.4% 73.4% 0_1ins405
14 human 9584 RBM39 RNA binding motif protein 39 XM_024452022.1 73.4% 73.4% 0_1ins405
15 human 9584 RBM39 RNA binding motif protein 39 XM_017028141.2 72.2% 72.2% 0_1ins405;701_702insAGAATTCTCTTTTGTTAT
16 human 9584 RBM39 RNA binding motif protein 39 XM_017028142.2 72.2% 72.2% 0_1ins405;701_702insAGAATTCTCTTTTGTTAT
17 human 9584 RBM39 RNA binding motif protein 39 XM_017028143.2 72.2% 72.2% 0_1ins405;701_702insAGAATTCTCTTTTGTTAT
18 human 9584 RBM39 RNA binding motif protein 39 XM_017028144.2 72.2% 72.2% 0_1ins405;701_702insAGAATTCTCTTTTGTTAT
19 human 9584 RBM39 RNA binding motif protein 39 XM_017028145.2 72.2% 72.2% 0_1ins405;701_702insAGAATTCTCTTTTGTTAT
20 human 9584 RBM39 RNA binding motif protein 39 XM_024452023.1 72.2% 72.2% 0_1ins405;701_702insAGAATTCTCTTTTGTTAT
21 human 9584 RBM39 RNA binding motif protein 39 XM_024452024.1 72.2% 72.2% 0_1ins405;701_702insAGAATTCTCTTTTGTTAT
22 human 9584 RBM39 RNA binding motif protein 39 XM_024452025.1 72.2% 72.2% 0_1ins405;701_702insAGAATTCTCTTTTGTTAT
23 human 9584 RBM39 RNA binding motif protein 39 XR_001754439.2 69.1% (many diffs)
24 human 9584 RBM39 RNA binding motif protein 39 XM_017028146.2 67.1% 67.1% 0_1ins405;624_625ins96
25 human 9584 RBM39 RNA binding motif protein 39 XM_017028147.1 67.1% 67.1% 0_1ins405;624_625ins96
26 human 9584 RBM39 RNA binding motif protein 39 NR_040723.2 29.6% (many diffs)
27 human 9584 RBM39 RNA binding motif protein 39 NR_040722.2 29.6% (many diffs)
28 human 9584 RBM39 RNA binding motif protein 39 NR_040724.2 29.3% (many diffs)
29 mouse 170791 Rbm39 RNA binding motif protein 39 XM_006498832.3 89.1% 95.8% (many diffs)
30 mouse 170791 Rbm39 RNA binding motif protein 39 NM_133242.3 88.9% 95.6% (many diffs)
31 mouse 170791 Rbm39 RNA binding motif protein 39 XM_017315966.1 88% 94.7% (many diffs)
32 mouse 170791 Rbm39 RNA binding motif protein 39 NM_001291114.1 87.8% 94.5% (many diffs)
33 mouse 170791 Rbm39 RNA binding motif protein 39 NM_001291115.1 87.8% 94.5% (many diffs)
34 mouse 170791 Rbm39 RNA binding motif protein 39 XM_006498844.3 68.7% 73.4% (many diffs)
35 mouse 170791 Rbm39 RNA binding motif protein 39 XM_006498846.3 68.7% 73.4% (many diffs)
36 mouse 170791 Rbm39 RNA binding motif protein 39 XM_006498847.3 68.7% 73.4% (many diffs)
37 mouse 170791 Rbm39 RNA binding motif protein 39 XM_006498848.3 68.7% 73.4% (many diffs)
38 mouse 170791 Rbm39 RNA binding motif protein 39 XM_006498849.3 68.7% 73.4% (many diffs)
39 mouse 170791 Rbm39 RNA binding motif protein 39 XM_011239322.2 68.7% 73.4% (many diffs)
40 mouse 170791 Rbm39 RNA binding motif protein 39 XM_011239323.2 68.7% 73.4% (many diffs)
41 mouse 170791 Rbm39 RNA binding motif protein 39 XM_011239324.2 68.7% 73.4% (many diffs)
42 mouse 170791 Rbm39 RNA binding motif protein 39 XM_011239325.2 68.7% 73.4% (many diffs)
43 mouse 170791 Rbm39 RNA binding motif protein 39 XM_017315976.1 68.7% 73.4% (many diffs)
44 mouse 170791 Rbm39 RNA binding motif protein 39 XM_017315978.1 68.7% 73.4% (many diffs)
45 mouse 170791 Rbm39 RNA binding motif protein 39 XM_017315987.1 68.7% 73.4% (many diffs)
46 mouse 170791 Rbm39 RNA binding motif protein 39 XM_017315989.1 68.7% 73.4% (many diffs)
47 mouse 170791 Rbm39 RNA binding motif protein 39 XM_017315991.1 68.7% 73.4% (many diffs)
48 mouse 170791 Rbm39 RNA binding motif protein 39 XM_017315992.1 68.7% 73.4% (many diffs)
49 mouse 170791 Rbm39 RNA binding motif protein 39 XM_011239326.2 67.5% 72.2% (many diffs)
50 mouse 170791 Rbm39 RNA binding motif protein 39 XM_011239327.2 67.5% 72.2% (many diffs)
51 mouse 170791 Rbm39 RNA binding motif protein 39 XM_017315994.1 67.5% 72.2% (many diffs)
52 mouse 170791 Rbm39 RNA binding motif protein 39 XM_017315998.1 67.5% 72.2% (many diffs)
53 mouse 170791 Rbm39 RNA binding motif protein 39 XM_017316005.1 67.5% 72.2% (many diffs)
54 mouse 170791 Rbm39 RNA binding motif protein 39 XM_017316008.1 67.5% 72.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1593
ORF length:
1524
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcagacgat attgatattg aagcaatgct tgaggctcct tacaagaagg
121atgagaacaa gttgagcagt gccaacggcc atgaagaacg tagcaaaaag aggaaaaaaa
181gcaagagcag aagtcgtagt catgaacgaa agagaagcaa aagtaaggaa cggaagcgaa
241gtagagacag agaaaggaaa aagagcaaaa gccgtgaaag aaagcgaagt agaagcaaag
301agaggcgacg gagccgctca agaagtcgag atcgaagatt tagaggccgc tacagaagtc
361cttacagacg acgttcccga agcaaaagtc cattcagaaa agacaagagc cctgtgagag
421aacctattga taatttaact cctgaggaaa gagatgcaag gacagtcttc tgtatgcagc
481tggcggcaag aattcgacca agggatttgg aagagttttt ctctacagta ggaaaggttc
541gagatgtgag gatgatttct gacagaaatt caagacgttc caaaggaatt gcttatgtgg
601agttcgtcga tgttagctca gtgcctctag caataggatt aactggccaa cgagttttag
661gcgtgccaat catagtacag gcatcacagg cagaaaaaaa cagagctgca gcaatggcaa
721acaatttaca aaagggaagt gctggaccta tgaggcttta tgtgggctca ttacacttca
781acataactga agatatgctt cgtgggatct ttgagccttt tggaagaatt gaaagtatcc
841agctgatgat ggacagtgaa actggtcgat ccaagggata tggatttatt acattttctg
901actcagaatg tgccaaaaag gctttggaac aacttaatgg atttgaacta gcaggaagac
961caatgaaagt tggtcatgtt actgaacgta ctgatgcttc gagtgctagt tcatttttgg
1021acagtgatga actggaaagg actggaattg atttgggaac aactggtcgt cttcagttaa
1081tggcaagact tgcagagggt acaggtttgc agattccgcc agcagcacag caagctctac
1141agatgagtgg ctctttggca tttggtgctg tggcagaatt ctcttttgtt atagatttgc
1201aaacaagact ttcccagcag actgaagctt cagctttagc tgcagctgcc tctgttcagc
1261cacttgcaac acaatgtttc caactctcta acatgtttaa ccctcaaaca gaagaagaag
1321ttggatggga taccgagatt aaggatgatg tgattgaaga atgtaataaa catggaggag
1381ttattcatat ttatgttgac aaaaattcag ctcagggcaa tgtgtatgtg aagtgcccat
1441caattgctgc agctattgct gctgtcaatg cattgcatgg caggtggttt gctggtaaaa
1501tgataacagc agcatatgta cctcttccaa cttaccacaa cctgtttcct gattctatga
1561cagcaacaca gctactggtt ccaagtagac gatnnccaac tttcttgtac aaagtggttg
1621gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
1681accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)