Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15672
- Subject:
- NR_040723.2
- Aligned Length:
- 5132
- Identities:
- 1524
- Gaps:
- 3608
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTGTGCTGGTGAATGTGAGTACAGGGAAGCAGCGGCCGCCATTTCAGGGAGCTTGTCGACGCTGTCGCAGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGATCCTGAGCTGCCGAAGCCGCCGTCCTGCTCTCCCGCGTGGGCTTCTCTAATTCCATTGTTTTTTTTAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTCTCTCGGGCCTAGCCGTCCTTGGAACCCGATATTCGGGCTGGGCGGTTCCGCGGCCTGGGCCTAGGGGCTTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACAGTAGCAACAGAAGCGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAATCTCTTCCCGAACACGAGCACC 296
Query 1 -------------------------------------ATGGCAGACGATATTGATATTGAAGCAATGCTTGAGG 37
|||||||||||||||||||||||||||||||||||||
Sbjct 297 ACAGGCGCCCGAAGGCCGGAACAGGCGTTTAGAGAAAATGGCAGACGATATTGATATTGAAGCAATGCTTGAGG 370
Query 38 CTCCTTACAAGAAGGATGAGAACAAGTTGAGCAGTGCCAACGGCCATGAAGAACGTAGCAAAAA---------- 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTCCTTACAAGAAGGATGAGAACAAGTTGAGCAGTGCCAACGGCCATGAAGAACGTAGCAAAAAACAAACTTTC 444
Query 102 --------------------------------------------------------------GAGGAAAAAAAG 113
||||||||||||
Sbjct 445 TGCCTCCTTGGAAAGCTCTACATCTCCTTGTGATTGGAGTGTGGGTTTCAAGATTCCAGAAGGAGGAAAAAAAG 518
Query 114 CAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGGAACGGAAGCGAAGTAGAGACAGAGAAA 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGGAACGGAAGCGAAGTAGAGACAGAGAAA 592
Query 188 GGAAAAAGAGCAAAAGCCGTGAAAGAAAGCGAAGTAGAAGCAAAGAGAGGCGACGGAGCCGCTCAAGAAGTCGA 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGAAAAAGAGCAAAAGCCGTGAAAGAAAGCGAAGTAGAAGCAAAGAGAGGCGACGGAGCCGCTCAAGAAGTCGA 666
Query 262 GATCGAAGATTTAGAGGCCGCTACAGAAGTCCTTA--------------------------------------- 296
|||||||||||||||||||||||||||||||||||
Sbjct 667 GATCGAAGATTTAGAGGCCGCTACAGAAGTCCTTACTCCGGACCAAAATTTAACAGTGCCATCCGAGGAAAGAT 740
Query 297 ---------------------------CAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAGACAAGAGCC 343
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGGGTTGCCTCATAGCATCAAATTAAGCAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAGACAAGAGCC 814
Query 344 CTGTGAGAGAACCTATTGATAATTTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTGGCG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTGTGAGAGAACCTATTGATAATTTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTGGCG 888
Query 418 GCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTTC 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTTC 962
Query 492 TGACAGAAATTCAAGACGTTCCAAAGGAATTGCTTATGTGGAGTTCGTCGATGTTAGCTCAGTGCCTCTAGCAA 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGACAGAAATTCAAGACGTTCCAAAGGAATTGCTTATGTGGAGTTCGTCGATGTTAGCTCAGTGCCTCTAGCAA 1036
Query 566 TAGGATTAACTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGCT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TAGGATTAACTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGCT 1110
Query 640 GCAGCAATGGCAAACAATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTTTATGTGGGCTCATTACACTTCAA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GCAGCAATGGCAAACAATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTTTATGTGGGCTCATTACACTTCAA 1184
Query 714 CATAACTGAAGATATGCTTCGTGGGATCTTTGAGCCTTTTGGAAGAATTGAAAGTATCCAGCTGATGATGGACA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CATAACTGAAGATATGCTTCGTGGGATCTTTGAGCCTTTTGGAAGAATTGAAAGTATCCAGCTGATGATGGACA 1258
Query 788 GTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAA 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAA 1332
Query 862 CAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAG 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAG 1406
Query 936 TGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAGT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAGT 1480
Query 1010 TAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGGC 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGGC 1554
Query 1084 TCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACTGA 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACTGA 1628
Query 1158 AGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTA 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTA 1702
Query 1232 ACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACAT 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACAT 1776
Query 1306 GGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGC 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGC 1850
Query 1380 TGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTAC 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTAC 1924
Query 1454 CTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCAAGTAGACGA--- 1524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCAAGTAGACGATGA 1998
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 1999 AGGAAGATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCATCTTGAGTTATCTTTTATTTAG 2072
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2073 ATAAAAATAAAGAGGCAAGGATCTACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAAATGTTA 2146
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2147 ACAGGAATGCAGTGTGCTCATTCTCCCTAAATAGTAAATCCCACTGTATACAAAACTGTTCTCTTGTTCTGCCT 2220
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2221 TTTAAAATGTTCATGTAGAAAATTAATGAACTATAGGAATAGCTCTAGGAGAACAAATGTGCTTTCTGTAAAAA 2294
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2295 GGCAGACCAGGGATGTAATGTTTTTAATGTTTCAGAAGCCTAACTTTTTACACAGTGGTTACATTTCACATTTC 2368
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2369 ACTAATGTTGATATTTGGCTGATGGTTGAGCAGTTTCTGAAATACACATTTAGTGTATGGAAATACAAGACAGC 2442
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2443 TAAAGGGCTGTTTGGTTAGCATCTCATCTTGCATTCTGATCAATTGGCAAGAAAGGGAGATTTCAAAATTATAT 2516
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2517 TTCTTGATGGTATCTTTTCAATTAATGTATCTGTAAAAGTTTCTTTGTAAATACTATGTGTTCTGGTGTGTCTT 2590
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2591 AAAATTCCAAACAAAATGATCCCTGCATTTCCTGAAGATGTTTAAACGTGAGAGTCTGGTAGGCAAAGCAGTCT 2664
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2665 GAGAAAGAAATAGGAAATGCAGAAATAGGTTTTGTCTGGTTGCATATAATCTTTGCTCTTTTTAAGCTCTGTGA 2738
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2739 GCTCTGAAATATATTTTTGGGTTACTTCAGTGTGTTTGACAAGACAGCTTGATATTTCTATCAAACAAATGACT 2812
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2813 TTCATATTGCAACAATCTTTGTAAGAACCACTCAAATAAAAGTCTCTTAAAAAGGCCACAGGAGATCTTCATTT 2886
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2887 TTCAAATGTTTTAAAGTTACAGAAATTTGAGAACAGAATTAGCTTCTTTTAGTCTCAATTCAGTACTTGCCTCT 2960
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2961 TGGGAAAATGTTCCGAGTCTGCGGAAACTTGCCCTCACGTTGTCCCCCATGAATTCCTTTATTCTATTAGAGTC 3034
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3035 TAGCCCTGTGTATTTTAGAAGAATGTATCAAAACTGAGGGGTTTACCAAAAAGAAAAGGAAACAGCCTGGCCTT 3108
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3109 AAAACCTGGGCATTCTTGGTCTCCTGCATTGTCTGGGCATATTTATGAAGAAATTTTCACCATTTACAATACAT 3182
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3183 ACTTAACAAAATGGCTTAACTTCAAACTGGTTTCCAAAATTGATTTATATATTAATATATTAAATAAGGTGCAT 3256
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3257 ATATTACTGTATTAAGGGGTTTTGAGCTTTCATACTAGTTGGGAAGCAAGCTGTCACCATTTATACTCAATTCT 3330
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3331 CTTCAACTGTTTATCTCTTGGTAAATCTTTTGAGTAGGAAATGCTGCTCCTAGCTTATCTTCAAATACTGAGTT 3404
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3405 CCTTACCTCATTTGTTCAACTTTTTTTTTTGTTAGCATTGAAGCACAAGTTTTACAGGCTTATTCAGAATTTCA 3478
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3479 TATCAGTCGTTTTGTTTGACATTTATCCCAATAATTGTTCTAGTGATTTAATTTGTATGGAAACTCCCAAGGTT 3552
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3553 CAATTTCTTTTTCTTTTTGAGATGGAGTCTTGCTCTTTGGCCCAGGCTGGAGTGCAGTGATGTGATCTCAGCTC 3626
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3627 CATCTCCCAGGTTCAAGCAATTCTCCCACCTCAGTCTCCTGAAGAGCTGGGACAGGTGCGCACCACCGTGCCCA 3700
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3701 GCTAATTTTTGTATTTTTAGCAGAGACGGTGTTAGCCCGGCTGGTCTCACACTGACCTCAAGTGATCTGTCCGC 3774
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3775 CTTGGCCTCCCAAAGTGCCGGGATTACAGGCATGAGCCACCGCGCCCAGCCTCATTGAAAATTTACTTTTCAAT 3848
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3849 ACCAGACTGCAGAGTTCTTTGGGGCAGAGACACTCTGTCAGTGTGCTCTTTTTCCAAAGTATCTCCTGCTATCA 3922
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3923 GTTTTTCCCCTTGAACCAAGTCTTCCTAACAAATTTGTTGTGTCATTGCTTTCTAGGGAACTGGACCAGCAAAT 3996
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3997 GTGGCCTTTAGTGGTTAATCTCATCTGTGCCAAAATTTAGTTGCTACCAGAGTGAAATTTGGTGTGTAAATAAT 4070
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4071 GTTCAGAGGAAATGTGGTTGGAGTGTAGTAACTTGAATAGTGTCGTGCATAGAAAACAGCTCATTCTGAGTGAA 4144
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4145 ACTGTTTATGTCCAATCAGTTCCTGAGTCAGCATCCCACTGGTTCGAAAATCTGTAACTAATCTGGTAATGTCC 4218
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4219 TTAATTTCCTCCTGCCTGTCAGTGTTCCAAAGTGTTCATCTAGTTTTCTTTTATCTTTATAATAATTACTACCA 4292
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4293 TCTTTGAAAGTTCTGTTTAAGAAATGCTTAATGGGCAATGCGGGTTAGTAACTCCAGGGTCTGCGTGGCCTGGG 4366
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4367 CAGGTGAGATGGACAACTGCCTCATTACAGAAGCTTTTTATCATCAAACTAGTAAGTTTTGTGGAGGGCAAGCT 4440
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4441 ATATAGATTGTTGATGAGTGGTTAGAAAATCATCTGGAATTTAGCCAGTTGAGAAGCTACAGAAGTTTCTATTT 4514
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4515 TTTTTTACAGTGGATGAACTGTTTTGCTTTTTCTGATAAAGCCACTAGGTATATCTAAATAACAACCTCGGGCT 4588
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4589 GGACGTGGTGCCTTATGCCTGTATATGTGAACACTGGGAGGCGGAGGCGGGTGGATCATGAGGTCAAGAGTTTG 4662
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4663 AGACCAGCCTGGCCAACACAGTGAAACCCCGTCTCTACTAAGAATACAAATTTTTTTTGTTTTGAGACAGAGTC 4736
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4737 TCGCTCTGTCGCCCAGGCTGGAGTGCAATGGCTCGATCTCAGCTCACTGCAACCTCCACCTTCTGGGTTCAAGC 4810
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4811 GATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGAATACAGGCGCGTGTCAACACACCCGGCTTAAGTTTTTGTA 4884
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4885 TTTTTAGTAGAGACGGGGTGTCACCGTGTTACCCAAGATGGTCTCCATCTCCTGACCTTGTGATCCACCAGCCT 4958
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4959 TTGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCCACCGCGCCCAGCCTAACAATACAAAATTTAGCTAGGCA 5032
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 5033 TGGTGGCACGTGCCTGTTATCACAGCTACTCGGGAGGCTGAGGCAGGAGAAACGCTTGAACACAGGAGGCAGAA 5106
Query 1525 -------------------------- 1524
Sbjct 5107 GTTGCGGTAAGCCGAGATCGTGCCAC 5132
