Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15831
- Subject:
- XR_001751301.2
- Aligned Length:
- 2546
- Identities:
- 1158
- Gaps:
- 1388
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAGTTAAGAGTGGCGCCAGGGATTTGAACCGCGCTGACGAAGTTTGGTGATCCATCTTCCGAGTATCGCCGGG 74
Query 1 -------------ATGATCATCCCCTCTCTAGAGGAGCTGGACTCCCTCAAGTACAGTGACCTGCAGAACTTAG 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATTTCGAATCGCGATGATCATCCCCTCTCTAGAGGAGCTGGACTCCCTCAAGTACAGTGACCTGCAGAACTTAG 148
Query 62 CCAAGAGTCTGGGTCTCCGGGCCAACCTGAGGGCAACCAAGTTGTTAAAAGCCTTGAAAGGCTACATTAAACAT 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCAAGAGTCTGGGTCTCCGGGCCAACCTGAGGGCAACCAAGTTGTTAAAAGCCTTGAAAGGCTACATTAAACAT 222
Query 136 GAGGCAAGAAAAGGAAATGAGAATCAGGATGAAAGTCAAACTTCTGCATCCTCTTGTGATGAGACTGAGATACA 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAGGCAAGAAAAGGAAATGAGAATCAGGATGAAAGTCAAACTTCTGCATCCTCTTGTGATGAGACTGAGATACA 296
Query 210 GATCAGCAACCAGGAAGAAGCTGAGAGACAGCCACTTGGCCATGTCACCAAAACAAGGAGAAGGTGCAAGACTG 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATCAGCAACCAGGAAGAAGCTGAGAGACAGCCACTTGGCCATGTCACCAAAACAAGGAGAAGGTGCAAGACTG 370
Query 284 TCCGTGTGGACCCTGACTCACAGCAGAATCATTCAGAGATAAAAATAAGTAATCCCACTGAATTCCAGAATCAT 357
|||||||||||||||||||| |||||||||
Sbjct 371 TCCGTGTGGACCCTGACTCA---------------------------------------------CAGAATCAT 399
Query 358 GAAAAGCAGGAAAGCCAGGATCTCAGAGCTACTGCAAAAGTTCCTTCTCCACCAGACGAGCACCAAGAAGCTGA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GAAAAGCAGGAAAGCCAGGATCTCAGAGCTACTGCAAAAGTTCCTTCTCCACCAGACGAGCACCAAGAAGCTGA 473
Query 432 GAATGCTGTTTCCTCAGGTAACAGAGATTCAAAGGTACCTTCAGAAGGAAAGAAATCTCTCTACACAGATGAGT 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GAATGCTGTTTCCTCAGGTAACAGAGATTCAAAGGTACCTTCAGAAGGAAAGAAATCTCTCTACACAGATGAGT 547
Query 506 CATCCAAACCTGGAAAAAATAAAAGAACTGCAATCACTACTCCAAACTTTAAGAAGCTTCATGAAGCTCATTTT 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CATCCAAACCTGGAAAAAATAAAAGAACTGCAATCACTACTCCAAACTTTAAGAAGCTTCATGAAGCTCATTTT 621
Query 580 AAGGAAATGGAGTCCATTGATCAATATATTGAGAGAAAAAAGAAACATTTTGAAGAACACAATTCCATGAATGA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 AAGGAAATGGAGTCCATTGATCAATATATTGAGAGAAAAAAGAAACATTTTGAAGAACACAATTCCATGAATGA 695
Query 654 ACTGAAGCAGCCCATCAATAAGGGAGGGGTCAGGACTCCAGTACCTCCAAGAGGAAGACTCTCTGTGGCTTCTA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 ACTGAAGCAGCCCATCAATAAGGGAGGGGTCAGGACTCCAGTACCTCCAAGAGGAAGACTCTCTGTGGCTTCTA 769
Query 728 CTCCCATCAGCCAACGACGCTCGCAAGGCCGGTCTTGTGGCCCTGCAAGTCAGAGTACCTTGGGTCTGAAGGGG 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CTCCCATCAGCCAACGACGCTCGCAAGGCCGGTCTTGTGGCCCTGCAAGTCAGAGTACCTTGGGTCTGAAGGGG 843
Query 802 TCACTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGT--------------------------------- 842
|||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TCACTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGTCAGGTAAAGAAATCACTCCAAAATGTAATCATG 917
Query 843 -------------------------------------------------------------------------- 842
Sbjct 918 AACAAGATTTCACATGGACTATATAAAAAAAAAATTTTTAATTGGCAAATAATATTCGTACATACTCATAGGGT 991
Query 843 -------------------------------------------------------------------------- 842
Sbjct 992 ACATAGTGATGTTTCTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTGAGATGAGGTCTCGCTCTGTCGCCCAGGC 1065
Query 843 -------------------------------------------------------------------------- 842
Sbjct 1066 TGGAGTGCAGTGGCGCAATCTCAGCTCCCTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTTCTGCCTCAGCC 1139
Query 843 -------------------CAGGTTTTCAGCTGCTACTAAAGATAATGAGCATAAGCGTTCACTGACCAAGACT 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCCCGAGTAGCTGGGACTACAGGTTTTCAGCTGCTACTAAAGATAATGAGCATAAGCGTTCACTGACCAAGACT 1213
Query 898 CCAGCCAGAAAGTCTGCACATGTGACCGTGTCTGGGGGCACCCCAAAAGGCGAGGCTGTGCTTGGGACACACAA 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 CCAGCCAGAAAGTCTGCACATGTGACCGTGTCTGGGGGCACCCCAAAAGGCGAGGCTGTGCTTGGGACACACAA 1287
Query 972 ATTAAAGACCATCACGGGGAATTCTGCTGCTGTTATTACCCCATTCAAGTTGACAACTGAGGCAACGCAGACTC 1045
|||||||||||||||||||||||||||||||
Sbjct 1288 ATTAAAGACCATCACGGGGAATTCTGCTGCT------------------------------------------- 1318
Query 1046 CAGTCTCCAATAAGAAACCAGTGTTTGATCTTAAAGCAAGTTTGTCTCGTCCCCTCAACTATGAACCACACAAA 1119
Sbjct 1319 -------------------------------------------------------------------------- 1318
Query 1120 GGAAAGCTAAAACCATGGGGGCAATCTAAAGAAAATAATTATCTAAATCAACATGTCAACAGAATTAACTTCTA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GGAAAGCTAAAACCATGGGGGCAATCTAAAGAAAATAATTATCTAAATCAACATGTCAACAGAATTAACTTCTA 1392
Query 1194 CAAGAAAACTTACAAACAACCCCATCTCCAGACAAAGGAAGAGCAACGGAAGAAACGCGAGCAAGAACGAAAGG 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 CAAGAAAACTTACAAACAACCCCATCTCCAGACAAAGGAAGAGCAACGGAAGAAACGCGAGCAAGAACGAAAGG 1466
Query 1268 AGAAGAAAGCAAAGGTTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGAT--------------------- 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 AGAAGAAAGCAAAGGTTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGATTAATAATTTTTTAACATCTTG 1540
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1541 TAAATATTCCTGTATTCTCAACTTTTTTCCTTTTGTAAATTTTTTTTTTTTGCTGTCATCCCCACTTTAGTCAC 1614
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1615 GAGATCTTTTTCTGCTAACTGTTCATAGTCTGTGTAGTGTCCATGGGTTCTTCATGTGCTATGATCTCTGAAAA 1688
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1689 GACGTTATCACCTTAAAGCTCAAATTCTTTGGGATGGTTTTTACTTAAGTCCATTAACAATTCAGGTTTCTAAC 1762
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1763 GAGACCCATCCTAAAATTCTGTTTCTAGATTTTTAATGTCAAGTTCCCAAGTTCCCCCTGCTGGTTCTAATATT 1836
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1837 AACAGAACTGCAGTCTTCTGCTAGCCAATAGCATTTACCTGATGGCAGCTAGTTATGCAAGCTTCAGGAGAATT 1910
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1911 TGAACAATAACAAGAATAGGGTAAGCTGGGATAGAAAGGCCACCTCTTCACTCTCTATAGAATATAGTAACCTT 1984
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1985 TATGAAACGGGGCCATATAGTTTGGTTATGACATCAATATTTTACCTAGGTGAAATTGTTTAGGCTTATGTACC 2058
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2059 TTCGTTCAAATATCCTCATGTAATTGCCATCTGTCACTCACTATATTCACAAAAATAAAACTCTACAACTCATT 2132
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2133 CTAACATTGCTTACTTAAAAGCTACATAGCCCTATCGAAATGCGAGGATTAATGCTTTAATGCTTTTAGAGACA 2206
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2207 GGGTCTCACTGTGTTGCCCAGGCTGGTCTCAAACTCCACCAAATGTACTTCTTATTCATTTTATGGAAAAGACT 2280
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2281 AGGCTTTGCTTAGTATCATGTCCATGTTTCCTTCACCTCAGTGGAGCTTCTGAGTTTTATACTGCTCAAGATCG 2354
Query 1321 ------------------------------ 1320
Sbjct 2355 TCATAAATAAAATTTTTTCTCATTGTCATA 2384
