Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15910
- Subject:
- XR_002957350.1
- Aligned Length:
- 3021
- Identities:
- 1410
- Gaps:
- 1607
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTAGATCTCTTAAAAAGATGGACCCTCAGCGGCGCTTCCTCGTAGCGAGCCTAGTGGCGGGTGTTTGCATTGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACGTGAGCGCGACCCGACCTTAAAGAGTGGGGAGCAAAGGGAGGACAGAGCCCTTTAAAACGAGGCGGGTGGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCTGCCCCTTTAAGGGCGGGGCGTCCGGACGACTGTATCTGAGCCCCAGACTGCCCCGAGTTTCTGTCGCAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGCGAGGAAAGGCCCCTAGGCTGGGTCTGGGTGCTTGGCGGCGGCGGCTTCCTCCCCGCTCGTCCTCCCCGGG 296
Query 1 --------------------------------------ATGGAAGCACCTGACTACGAAGTGCTATCCGTGCGA 36
||||||||||||||||||||||||||||||||||||
Sbjct 297 CCCAGAGGCACCTCGGCTTCAGTCATGCTGAGCAGAGTATGGAAGCACCTGACTACGAAGTGCTATCCGTGCGA 370
Query 37 GAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTACATCCTCTG 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTACATCCTCTG 444
Query 111 CCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTGGATGATGAAGATGCCACCGTCAACA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTGGATGATGAAGATGCCACCGTCAACA 518
Query 185 AGATTGCGCTCGAGCTGTGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGATTGCGCTCGAGCTGTGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATC 592
Query 259 ATCAGCAATGAGGTGCTGCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATCAGCAATGAGGTGCTGCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGG 666
Query 333 CCTCTGGAACCTTGTTTTTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTG 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCTCTGGAACCTTGTTTTTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTG 740
Query 407 AGTCTGAGGGCTTTGCTGGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGTCTGAGGGCTTTGCTGGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTC 814
Query 481 CTCACTCTGCTGGTGCTAGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTCACTCTGCTGGTGCTAGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTC 888
Query 555 ACTCTATGACTTTTGGGAGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACTCTATGACTTTTGGGAGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCC 962
Query 629 TGGTGTGTACTCCACTGGGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTG 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGGTGTGTACTCCACTGGGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTG 1036
Query 703 GAAGACCTGGAGGAGCAGCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTAC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAAGACCTGGAGGAGCAGCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTAC 1110
Query 777 TTCCTGCTGGCTGCCTTTAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTCCTGCTGGCTGCCTTTAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGC 1184
Query 851 TG------------------------------------------------------------------------ 852
||
Sbjct 1185 TGGGTATGTGGCTTCGTAGGGCTTGGGATACCTGGGTTTCCCCAAGGAGAGTAGCCCCTGGTTCCAGGTGCTTG 1258
Query 853 ------------------------GAGAAGAGGCGGAAGGCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCT 902
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTGACAGCCTCCCATCCCTGCACAGAGAAGAGGCGGAAGGCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCT 1332
Query 903 GGCTATGCTGTGCTTGCTGGTGCTGACGGGCCTGTCTGTGCTCATTGTGGCCATCCACATCCTGGAGCTGCTCA 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GGCTATGCTGTGCTTGCTGGTGCTGACGGGCCTGTCTGTGCTCATTGTGGCCATCCACATCCTGGAGCTGCTCA 1406
Query 977 TCGATGAGGCTGCCATGCCCCGAGGCATGCAGGGTACCTCCTTAGGCCAGGTCTCCTTCTCCAAGCTGGGCTCC 1050
||||||||||||||||||||||||||||||| |||| |||.||||..||||
Sbjct 1407 TCGATGAGGCTGCCATGCCCCGAGGCATGCA-GGTA------------------------CCAGGCTGCCCTCC 1455
Query 1051 TTTGGTGCCGTCATTCAGGTTGTACTCATCTTTTACCTAATGGTGTCCTCAGTTGTGGGCTTCTATAGCTCTCC 1124
||.| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 --------------------------CACC--TTACCTAATGGTGTCCTCAGTTGTGGGCTTCTATAGCTCTCC 1501
Query 1125 ACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGCAGATAATTGGGAACTGTGTCTGTCTCC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 ACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGCAGATAATTGGGAACTGTGTCTGTCTCC 1575
Query 1199 TGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTCACTCGCTTTGACCTGCTGGGTGACTTT 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 TGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTCACTCGCTTTGACCTGCTGGGTGACTTT 1649
Query 1273 GGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAACGCAGCCTTTGCAGGCCTCACCACACT 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 GGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAACGCAGCCTTTGCAGGCCTCACCACACT 1723
Query 1347 CTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCCGGGCCTTTGGGCTGGACAGACTGCCGC 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724 CTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCCGGGCCTTTGGGCTGGACAGACTGCCGC 1797
Query 1421 TGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAG--------------------------- 1467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAGTGACCTCCAGCTGGGGGTGGGAAGGAA 1871
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 1872 AAAACTGGACACTGCCATCTGCTGCCTAGGCCTGGAGGGAAGCCCAAGGCTACTTGGACCTCAGGACCTGGAAT 1945
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 1946 CTGAGAGGGTGGGTGGCAGAGGGGAGCAGAGCCATCTGCACTATTGCATAATCTGAGCCAGAGTTTGGGACCAG 2019
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2020 GACCTCCTGCTTTTCCATACTTAACTGTGGCCTCAGCATGGGGTAGGGCTGGGTGACTGGGTCTAGCCCCTGAT 2093
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2094 CCCAAATCTGTTTACACATCAATCTGCCTCACTGCTGTTCTGGGCCATCCCCATAGCCATGTTTACATGATTTG 2167
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2168 ATGTGCAATAGGGTGGGGTAGGGGCAGGGAAAGGACTGGGCCAGGGCAGGCTCGGGAGATAGATTGTCTCCCTT 2241
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2242 GCCTCTGGCCCAGCAGAGCCTAAGCACTGTGCTATCCTGGAGGGGCTTTGGACCACCTGAAAGACCAAGGGGAT 2315
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2316 AGGGAGGAGGAGGCTTCAGCCATCAGCAATAAAGTTGATCCCAGGGTTTGCTTTGTTTTTTTAAAGCACCTGTC 2389
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2390 TCTGTGTATATTTGAACAGCCTTGCTCCCACCAGCCCGGCGTCTGCCCAGTAAGAGAAGCAGAGGGGTCCTGCC 2463
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2464 CACCATCCTTTTCCTTCCCCTTCATCTATATTATTACCATCCTTTGGGGACTTGGATCTGGTGTTAGGCCATGC 2537
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2538 AGTTGGGCAGTGGGAAACTCCTCCATCCTCAGTCTTGCTTAAAGCTGGCTTGTCCCCTGACTCCTCCTTATATT 2611
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2612 CATGGCCTTGTTTCTGTACCTTGAGTATTGGGGGTAGGACATGGGCATAGGAGTAGGCTAACCTCCCCGATACA 2685
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2686 CTCATACCTTCAGCCCTATCCTCCCTGGCTTAACTATTGGATATAGAGTAAAATAAGTGGCTGGCTGACAAGGA 2759
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2760 TTTTCATTTCCTACCTGAGAGAAGAATCTAGCTTTTTACTAGAGGCCATCAGTTTCTTGAAAAGCCCATGTGCT 2833
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2834 ATGTTGGGAGTAAGAGCGCAAAACTTAGGCTTATACAGATTGTGTATTGCACAGCTTCCAGGGACACCATTCAC 2907
Query 1468 ------------------------------------------------------------- 1467
Sbjct 2908 CTCATAGTCATTGTGTGGATAGTTACTATGATAGTTTTCTAATAAATGTCAGTCATCTTGA 2968
