Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_16008
- Subject:
- XM_017317781.1
- Aligned Length:
- 2340
- Identities:
- 1164
- Gaps:
- 1062
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAAAGTCTCCTCTTCTCAAGACCACTCGAGGTGGATGCGACTGGTTGATATCAACCTCGTGCGGTGCCATGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTTGAAGCTGGATTCTTTTGGCCAGTTTGTTGAATTATTGCCCAGCCTGGAATTTATTTCTCTGGACCAGATGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCCGTGAGCCACCCAAGGGCTGTGCTCGAGTTGGTCTGAGTGCAGGAACTGGAATTGGGGTTTCCTCAGCGCTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTCAGCAACCAGAATTCCAACAATGACAATGACAATAATGCTCCAAATAACAACGCCAACCTCCATGATAACAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCACCATCACCCAGATGATTCGGATGACGACAATGACTTTCGTCCAGACCTACAAGCAGGAGAGGCACAATTTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAGCCGATGCGTTGAATGAGATGGAAGACATGGTCCAGGAAGATGGAGAACTGGTAGCCGAGAGTGGAAATGGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATGCCAGCTCACAATCGGGAAGTTCTTCCTGTGGATGCTGATGAGGAACAAGCAGGACCTAGTGGTCTACAACG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGTGGTAAAACCTACACCAATTGCTGATCACGATTCAGAGAGCGATGATGAAGAAGATAGTTTAGAACTCCAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAGTCTGGGCTCCTAAGAATGGCACCCGGCGTTACTCAGAGCGGGAAGAAAAGACTGGAGACTCAGGACAGTCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGGGAAACGGCAGTAAGTGGGAAAGGCAAGACTCCACTTCGAAAGAGGTGCAACAACTCCCACCAGACGGGCCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGCGAAGCCGTTTCCCCTGGAGGAGAGCAGCTGTGAGAAAGGCTGTCAGGTGACCAGTGAGCAGATCAAAGCCG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATATGAAAGCAGCTAGGGATGTTTCTGAAAAGAAAAAATCCAAGGATGTCTATCCCAGCTGCAGCAGCAGCAGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCAGCACAGCCGCCAGCACAGCGGGAAACGCCAGCTCACCCAGCACTGCTTCCCAGAGCCCGGACTTTGCAAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GACGGTGACCAGCAGCGGCTCTTCCGAGCCGAGCCCTCCAGAAGTAGATGTATCCAGGCAGTGTGTCTGCTCCC 1036
Query 1 --------------------------ATGGAGGAGGGAGATGCAGAGAGTTCTGTCTGCCCCAGATGCTGCTGT 48
|||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1037 CTGGTGGGTCAGAGGACTCTGAGGCCATGGAGGAGGGAGATGCAGAGAGCTCTGTCTGCCCCAGATGCTGCTGT 1110
Query 49 CACAGGCCCCAGGAATCCCAAAGGAGAACTAGCAGGTGTTCTGATGAGGAACGTCCTTCAACCAGCCGAGCCTG 122
|.||||||||||||.||.||||||||||||.|||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1111 CTCAGGCCCCAGGAGTCTCAAAGGAGAACTGGCAGGTGTTCTGATGAGGAGCGTCCTTCAACCAGCCGAGCCTG 1184
Query 123 TGTTGTGAATGGCCCGGATGGTACGAGATCCGCCTTTTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCC 196
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGTTGTGAATGGCGCGGATGGTACGAGATCCGCCTTTTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCC 1258
Query 197 CAGCACATGATGAGAGGACTAATGGGAGTGGCTCTGGGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCT 270
|||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CAGCACATGATGAGAGGACTAATGGGAGTGGCTGTGGGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCT 1332
Query 271 GAGAGTTGTGACGTGCAGTCTAATGAAGACTACCCTCGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCA 344
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GAGAGTTGTGACGTGCAGTCTAATGAAGACTATCCTCGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCA 1406
Query 345 TGTACTGCTGGTATCTGAGTCAGAAGTAGCCAAAACAAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAG 418
|||||.||||.||||||||||||||||.|||||||||||||||.|.||.|||||||||||.|||||.||.||||
Sbjct 1407 TGTACCGCTGATATCTGAGTCAGAAGTTGCCAAAACAAAGCCATGCCATGCCATGAAACGAAAGCGAACTGCAG 1480
Query 419 ATAAATCCACTAGTACAAGTGATCCTGTGATCGAGGATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAAT 492
||||.||.||.||.||.|||||.||||||||.||.||||||||.||.|||||||||||||||||||||||.|||
Sbjct 1481 ATAAGTCTACCAGCACCAGTGACCCTGTGATTGAAGATGACCACGTACAGGTTCTTGTATTAAAATCCAAAAAT 1554
Query 493 CTTGTTGGAGTCACTATGACCAATTGTGGAATCACAGATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCAT 566
||||||||||||||.|||||||||||||||||||||||||||||.||.||||||||.||.||||||||||||||
Sbjct 1555 CTTGTTGGAGTCACAATGACCAATTGTGGAATCACAGATCTAGTACTGAAAGACTGCCCCAAGATGATGTTCAT 1628
Query 567 CCATGCTACCAGGTGCAGGGTACTAAAACATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATG 640
||||||||||||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CCATGCTACCAGGTGCAGGGTACTGAAGCATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATG 1702
Query 641 CACAGTGCAAGAAACTGAACATGGATCAGGTACTAGACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATC 714
||||||||||||||||.||.|||||.||||||||||||||.|||||.||.|||||.||.|||||.|||||.|||
Sbjct 1703 CACAGTGCAAGAAACTAAATATGGACCAGGTACTAGACCAAATACTGAGGATGCCTCCGGAGAGGAACCGGATC 1776
Query 715 ATATACCTACGCCCAATGCAGCAGGTGGACACTCTAACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTA 788
||.|||||.|||||||||||||||||.|||||.||||||.|||||||||||||.||.||.||.|||||||||||
Sbjct 1777 ATCTACCTGCGCCCAATGCAGCAGGTAGACACACTAACTCTGGAGCAGAAGCTCTTCAGCGGGCCCTACCCCTA 1850
Query 789 TCACATCTGTATTATCCATGAATTCAGTAACCCTCCCAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGG 862
|||||||||.||.|||||.||.|||||.||.||||||||.||.|||||.|||||||||||.||||..|||||||
Sbjct 1851 TCACATCTGCATCATCCACGAGTTCAGCAATCCTCCCAACGTGCGGAACAAGGTGCGCATCCGCAATTGGATGG 1924
Query 863 ACACTATAGCAAACATCAATCAAGAGCTCATTAAATATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGAC 936
||||.|||||.||||||||||||||||||||||||||.||||||||||..|||||||||||.|.||||||.||.
Sbjct 1925 ACACGATAGCCAACATCAATCAAGAGCTCATTAAATACGAATTCTTCCTGGAAGCCACTCGGACTGAAGAGGAT 1998
Query 937 TTAAAGAAATACCCCAAGTACCCCTGGGGGAGAGAAATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATA 1010
||||||||.|||||.|||||.||||||||||||||||||||.||||||||.||||||||.||||||||.||.||
Sbjct 1999 TTAAAGAAGTACCCTAAGTATCCCTGGGGGAGAGAAATCTACACTTTAGAGGGTGTTGTAGATGGAGCGCCGTA 2072
Query 1011 TTCCATGATTTCTGACTTCCCTTGGCTGAGGTCATTACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACT 1084
||||||||||||.|||||||||||||||||||||.|.||..|.|||||||||||||||||.||..||||.||.|
Sbjct 2073 TTCCATGATTTCCGACTTCCCTTGGCTGAGGTCACTGCGGACCGCAGAGCCCAACAGCTTTGCCAGATATGATT 2146
Query 1085 TTGAAGACGATGAAGAAAGCACTATCTATGCTCCTAGAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAA 1158
|||||||.||||||||.|||||.||||||||||||.||||.|||||.|||.|||||||||||||.||||||||.
Sbjct 2147 TTGAAGATGATGAAGAGAGCACCATCTATGCTCCTCGAAGAAAAGGGCAGTTGTCTGCAGACATTTGTATGGAG 2220
Query 1159 ACAATAGGAGAGGAAATTTCAGAGATGCGTCAGATGAAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTAT 1232
||||||||||||||.||.|||||||||||.||||||||||.|||..||||||||||||||||.||.||||||||
Sbjct 2221 ACAATAGGAGAGGAGATCTCAGAGATGCGCCAGATGAAGAGGGGCATATTTCAGCGAGTAGTAGCGATTTTTAT 2294
Query 1233 CCACTATTGTGATGTCAATGGAGAGCCAGTTGAAGATGACTACATT 1278
||||||.|||||||||||||||||||||||||||||.|||||||||
Sbjct 2295 CCACTACTGTGATGTCAATGGAGAGCCAGTTGAAGACGACTACATT 2340
