Nucleotide Global Alignment

Description

Query:
ccsbBroad304_16077
Subject:
NM_001286251.1
Aligned Length:
1694
Identities:
341
Gaps:
1318

Alignment

Query    1  ATGCCGTCTGAACGCTGCCTCAGTATTCAAGAAATGCTGACAGGCCAGAGGCTCTGCCACTCCGAATCTCACAA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGCCGTCTGAACGCTGCCTCAGTATTCAAGAAATGCTGACAGGCCAGAGGCTCTGCCACTCCGAATCTCACAA  74

Query   75  TGACAGTGTCCTGGCAGCGCTGAATCAGCAGAGGAGTGATGGCATCCTCTGCGACATCACCCTGATTGCTGAGG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGACAGTGTCCTGGCAGCGCTGAATCAGCAGAGGAGTGATGGCATCCTCTGCGACATCACCCTGATTGCTGAGG  148

Query  149  AACAGAAATTCCATGCTCACAAGGCAGTCCTAGCAGCATGCAGTGACTATTTCCGGGCAATGTTCAGT--CTTT  220
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|   ||.|.|  ||||
Sbjct  149  AACAGAAATTCCATGCTCACAAGGCAGTCCTAGCAGCATGCAGTGACTATTTCCGGGAA---TTAAATAGCTTT  219

Query  221  GTATGGTGGAAA----GTGGAGCTGATGAGGTTAATTTGCACGGTGTGACC-----AGCC-----TTGGCTTAA  280
                      ||    .||||.|||...||    |.||||      |||||     |.||     |||  ||..
Sbjct  220  ----------AATTACTTGGATCTGTACAG----ACTTGC------TGACCTCTTTAACCTCACTTTG--TTGG  271

Query  281  AGCAGGCTCTG---GAGTT-----TGCATACA-----CAGGACAGATTTTGCTGGAG------CCAG-------  328
            ||.||||..||   ||.||     || |.|||     |.|.||      |.|||.||      ||||       
Sbjct  272  AGAAGGCAGTGATCGATTTCTTAGTG-AAACATCTCTCTGAAC------TCCTGAAGAGCCGCCCAGAAGAAGT  338

Query  329  -----------------GTGTGATCCAGGATGTGCT--------------------------------AGCAG-  352
                             |..||.|.|||||.|||||                                ||||| 
Sbjct  339  TCTAACGCTTCCCTATTGCCTGCTTCAGGAGGTGCTGAAGAGCGACCGCCTGACCTCCCTGAGTGAAGAGCAGA  412

Query  353  -CGGGCAGTCACCTACAGCT--------GTTGGA--------GCTTCT--CAATTTAT------GCTCC--CAC  399
             |.|||||    ||  ||||        ||||||        ||..||  ||.|..||      |||||  ||.
Sbjct  413  TCTGGCAG----CT--AGCTGTGAGGTGGTTGGAACACAACTGCCACTACCAGTACATGGACGAGCTCCTGCAA  480

Query  400  TATCTCATCC---------------AGGTGGAG-----------------------------------------  417
            ||   |||||               |.|||||.                                         
Sbjct  481  TA---CATCCGCTTTGGCCTAATGGATGTGGATACTCTCCATACAGTTGCCCTGTCCCACCCCCTTGTCCAAGC  551

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct  552  AAGTGAGACTGCAACAGCCCTTGTCAACGAGGCCCTGGAATACCACCAGAGCATCTATGCACAGCCTGTCTGGC  625

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct  626  AGACTCGCAGGACCAAACCACGATTCCAGTCAGACACTCTGTATATCATTGGTGGGAAAAAGCGCGAGGTCTGC  699

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct  700  AAGGTCAAGGAACTTCGGTACTTCAATCCTGTTGATCAGGAGAATGCTCTCATAGCTGCCATTGCCAACTGGAG  773

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct  774  TGAGCTGGCTCCCATGCCTGTGGGAAGGAGCCACCATTGTGTGGCAGTCATGGGGGACTTCCTGTTTGTGGCAG  847

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct  848  GAGGGGAAGTTGAGCATGCCAGTGGCCGGACGTGTGCTGTGAGGACTGCCTGTCGCTATGACCCCCGCAGTAAT  921

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct  922  TCCTGGGCAGAGATAGCACCCATGAAAAACTGCCGGGAGCATTTTGTGCTGGGTGCCATGGAGGAATACCTCTA  995

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct  996  TGCAGTTGGGGGCAGAAATGAACTGCGCCAGGTTCTGCCTACAGTTGAGCGATATTGCCCCAAGAAGAACAAAT  1069

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct 1070  GGACTTTTGTTCAGTCCTTTGACAGATCCCTTTCATGCCATGCTGGATATGTGGCTGATGGTCTTCTTTGGATA  1143

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct 1144  TCAGGTGGAGTAACTAATACGGCACAATATCAGAACAGGCTAATGGTGTATGAACCTAACCAGAATAAGTGGAT  1217

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct 1218  AAGCCGTAGCCCCATGCTGCAGAGAAGGGTCTACCATTCCATGGCTGCTGTACAAAGGAAGCTTTATGTTCTTG  1291

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct 1292  GAGGCAATGACCTAGACTACAATAATGACCGGATCCTTGTGCGCCATATAGATTCTTACAACATAGACACTGAC  1365

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct 1366  CAGTGGACACGTTGTAATTTCAACCTGCTGACTGGCCAAAATGAATCTGGAGTTGCTGTCCATAATGGGAGAAT  1439

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct 1440  ATATTTAGTTGGTGGATATTCAATTTGGACAAATGAGCCTCTGGCTTGTATCCAGGTACTGGATGTAAGCAGAG  1513

Query  418  --------------------------------------------------------------------------  417
                                                                                      
Sbjct 1514  AAGGCAAAGAAGAAGTATTCTATGGGCCTACACTCCCTTTTGCTTCCAATGGAATAGCAGCATGCTTCCTTCCA  1587

Query  418  ------------------------------------------------------------------  417
                                                                              
Sbjct 1588  GCTCCATATTTTACATGCCCTAACCTTCAAACTCTTCAAGTGCCTCATCACAGGATTGGCACCATC  1653

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