Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_16175
- Subject:
- XM_011241140.2
- Aligned Length:
- 2757
- Identities:
- 1568
- Gaps:
- 1062
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCGGGTGACGCCGTTGCCGCGGCGACTCCTCGTCGTCTCCGCCCCCTCCCCCCCCCAAATCCCCTCAGGCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCTGCGCCGGGGCCGCCGGCGGGTTCCAGAGGTGGCCTCCGCCCCGGCCGCTCCGCCCACGCCCCCCGCGCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGCGCCCGCCTCCGCCCGCCCTGCGCCTCCCTTCCCCCTCCCCGCCCCGCGGCGGCCGCTCGGCCCGGCTCGC 222
Query 1 ---------ATGGCGGCGCTGA------------------------------------------------GCGG 17
||||||||||||| ||||
Sbjct 223 GCTTCGAAGATGGCGGCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGG 296
Query 18 TGGCGGT---------GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCG 82
||||||| ||.||||||||.||||.||||||||||||||||||.||.|||||||||||.|||
Sbjct 297 TGGCGGTGGCGACGGCGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG---- 366
Query 83 GCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAA 156
||||||||.|||||||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.|||
Sbjct 367 --GCCGGCGCTGGCGCCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAA 438
Query 157 ATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAAT 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||
Sbjct 439 ATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAAT 512
Query 231 ATATCTGGAGGCCTATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAAT 304
|||.|||||||||||||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.|||||||
Sbjct 513 ATACCTGGAGGCCTATGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAAT 586
Query 305 CTCTGGGGAACGGAACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCT 378
|.|||||.||.|||.|.||||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||
Sbjct 587 CCCTGGGTAATGGAGCAGATTTTTCTGTTTCTAGCTCTGCATCAATGGACACCGTTACATCCTCCTCCTCTTCT 660
Query 379 AGCCTTTCAGTGCTACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTC 452
|||||||||||||||||.||||||||||||||||||||||.|||||||||||...||||||.||||||||||||
Sbjct 661 AGCCTTTCAGTGCTACCATCATCTCTTTCAGTTTTTCAAACTCCCACAGATGCATCACGGAACAACCCCAAGTC 734
Query 453 ACCACAAAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTA 526
||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||
Sbjct 735 ACCACAGAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTA 808
Query 527 CAGTCCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATT 600
||||.||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||
Sbjct 809 CAGTTCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATT 882
Query 601 CAGGATGG---------AGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTGGCTTACTGGAGAAGAATT 665
|||||||| ||||||||||||||||||.||||||||.||.||||||||||||||||||||.||.||
Sbjct 883 CAGGATGGGTATGGTTTAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTT 956
Query 666 GCATGTGGAAGTGTTGGAGAATGTTCCACTTACAACACACAACTTTGTACGAAAAACGTTTTTCACCTTAGCAT 739
.|||||.|||||..||||||||||.||||||||||||||||||||||||||.|||||.||||||||||||||||
Sbjct 957 ACATGTTGAAGTACTGGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCAT 1030
Query 740 TTTGTGACTTTTGTCGAAAGCTGCTTTTCCAGGGTTTCCGCTGTCAAACATGTGGTTATAAATTTCACCAGCGT 813
|||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1031 TTTGTGACTTTTGCCGAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGT 1104
Query 814 TGTAGTACAGAAGTTCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGA 887
|||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TGTAGTACAGAGGTTCCACTGATGTGTGTAAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGA 1178
Query 888 ACACCACCCAATACCACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCAC 961
.||.||||||.||||||||||.|||||.|||||..|||||||||||||..||||||| ||||.|||||||||
Sbjct 1179 GCATCACCCAGTACCACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCAC 1249
Query 962 CCGCCTCGGACTCTATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCC 1035
||.||||.|||||||.||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1250 CCCCCTCAGACTCTACTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCC 1323
Query 1036 TTCCGACCAGCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCA 1109
||||||||||||||||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.||
Sbjct 1324 TTCCGACCAGCAGATGAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCA 1397
Query 1110 TATAAACACAATAGAACCTGTCAATATTGAT------------------------------------GACTTGA 1147
||||||||||||.||.|||||.|||||.||| ||.||||
Sbjct 1398 TATAAACACAATTGAGCCTGTGAATATCGATGAAAAATTCCCAGAAGTGGAATTACAGGATCAAAGGGATTTGA 1471
Query 1148 TTAGAGACCAAGGATTTCGTGGTGATG----------------------------------------------- 1174
||||||||||.||.|||||||||||||
Sbjct 1472 TTAGAGACCAGGGGTTTCGTGGTGATGGAGCCCCCTTGAACCAACTGATGCGCTGTCTTCGGAAATACCAATCC 1545
Query 1175 -------------------------------------------------------------------------G 1175
|
Sbjct 1546 CGGACTCCCAGCCCCCTCCTCCATTCTGTCCCCAGTGAAATAGTGTTTGATTTTGAGCCTGGCCCAGTGTTCAG 1619
Query 1176 AGGATCAACCACAGGTTTGTCTGCTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTAC 1249
|||.|||||||||||.|||||.||.|||||.|||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1620 AGGGTCAACCACAGGCTTGTCCGCCACCCCGCCTGCCTCATTACCTGGCTCACTCACTAACGTGAAAGCCTTAC 1693
Query 1250 AGAAATCTCCAGGACCTCAGCGAGAAAGGAAGTCATCT------TCATCCTCAGAAGACAGGAATCGAATGAAA 1317
|||||||||||||.||||||||.||||||||||||||| ||||||||.||.|||||.|.|||.||||||
Sbjct 1694 AGAAATCTCCAGGTCCTCAGCGGGAAAGGAAGTCATCTTCTTCCTCATCCTCGGAGGACAGAAGTCGGATGAAA 1767
Query 1318 ACACTTGGTAGACGGGACTCGAGTGATGATTGGGAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGG 1391
||||||||||||.|.||.||.||||||||.|||||||||||||||||.|||||||||||||||||.||||||||
Sbjct 1768 ACACTTGGTAGAAGAGATTCAAGTGATGACTGGGAGATTCCTGATGGACAGATTACAGTGGGACAGAGAATTGG 1841
Query 1392 ATCTGGATCATTTGGAACAGTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAG 1465
||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 ATCTGGGTCATTTGGAACTGTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAG 1915
Query 1466 CACCTACACCTCAGCAGTTACAAGCCTTCAAAAATGAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATC 1539
||||.||||||||.|||.||||.|||||||||||||||||||||||.|||||||||||.|||||||||||||||
Sbjct 1916 CACCCACACCTCAACAGCTACAGGCCTTCAAAAATGAAGTAGGAGTGCTCAGGAAAACTCGACATGTGAATATC 1989
Query 1540 CTACTCTTCATGGGCTATTCCACAAAGCCACAACTGGCTATTGTTACCCAGTGGTGTGAGGGCTCCAGCTTGTA 1613
||.||.||||||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||||||||.||
Sbjct 1990 CTCCTTTTCATGGGCTATTCTACAAAGCCACAACTGGCAATTGTTACACAGTGGTGTGAGGGCTCCAGCTTATA 2063
Query 1614 TCACCATCTCCATATCATTGAGACCAAATTTGAGATGATCAAACTTATAGATATTGCACGACAGACTGCACAGG 1687
||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||
Sbjct 2064 TCACCATCTCCACATCATTGAGACCAAATTTGAGATGATCAAACTTATAGATATTGCTCGGCAGACTGCACAGG 2137
Query 1688 GCATGGATTACTTACACGCCAAGTCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGAC 1761
||||||| .|||...|||
Sbjct 2138 GCATGGA------GCACCAGAAG--------------------------------------------------- 2154
Query 1762 CTCACAGTAAAAATAGGTGATTTTGGTCTAGCTACAGAGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACA 1835
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 1836 GTTGTCTGGATCCATTTTGTGGATGGCACCAGAAGTCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGT 1909
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 1910 CAGATGTATATGCATTTGGAATTGTTCTGTATGAATTGATGACTGGACAGTTACCTTATTCAAACATCAACAAC 1983
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 1984 AGGGACCAGATAATTTTTATGGTGGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCC 2057
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 2058 AAAAGCCATGAAGAGATTAATGGCAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTC 2131
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 2132 TCGCCTCTATTGAGCTGCTGGCCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGG 2205
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 2206 GCTGGTTTCCAAACAGAGGATTTTAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATA 2279
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 2280 TGGTGCGTTTCCTGTCCAC 2298
Sbjct 2155 ------------------- 2154