Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00050
- Subject:
- NM_001031615.2
- Aligned Length:
- 1422
- Identities:
- 1016
- Gaps:
- 285
Alignment
Query 1 ATGGACCCCCTTGGGGACACGCTGCGGCGACTGCGGGAGGCCTTCCACGCGGGGCGCACGCGGCCAGCTGAGTT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CCGGGCTGCGCAGCTCCAAGGCCTGGGCCGCTTCCTGCAAGAAAACAAGCAGCTTCTGCACGACGCACTGGCCC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 AGGACCTGCACAAGTCAGCCTTCGAGTCGGAGGTGTCTGAGGTTGCCATCAGCCAGGGCGAGGTCACCCTGGCC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 CTCAGGAACCTCCGGGCCTGGATGAAGGACGAGC----GTGTGCCCAAGAACCTGGCCACGCAGCTGGACTCCG 292
||||||||.||.| || |||.|||||||..||.|.||||||||||.|
Sbjct 1 ---------------------ATGAAGGATGAACCACGGT----CCACGAACCTGTTCATGAAGCTGGACTCGG 49
Query 293 CCTTCATCCGGAAGGAGCCCTTTGGCCTGGTCCTCATCATTGCGCCCTGGAACTATCCGCTGAACCTGACGCTG 366
.|||||||.|||||||.|||||||||||||||||||||||.||.|||||||||||.||.|||||||||||.|||
Sbjct 50 TCTTCATCTGGAAGGAACCCTTTGGCCTGGTCCTCATCATCGCACCCTGGAACTACCCACTGAACCTGACCCTG 123
Query 367 GTGCCCCTCGTGGGAGCCCTCGCTGCAGGGAACTGTGTGGTGCTGAAGCCATCGGAGATTAGCAAGAACGTCGA 440
||||.|||.|||||.||||||||.|||||||..||.||||||||||||||.||.||.||.|||.||..|...||
Sbjct 124 GTGCTCCTGGTGGGCGCCCTCGCCGCAGGGAGTTGCGTGGTGCTGAAGCCGTCAGAAATCAGCCAGGGCACAGA 197
Query 441 GAAGATCCTGGCCGAGGTGCTGCCCCAATACGTGGACCAGAGCTGCTTTGCTGTGGTGCTGGGCGGGCCCCAGG 514
||||.|||||||.||||||||||||||.|||.|||||||||||||||||||.||||||||||||||.|||||||
Sbjct 198 GAAGGTCCTGGCTGAGGTGCTGCCCCAGTACCTGGACCAGAGCTGCTTTGCCGTGGTGCTGGGCGGACCCCAGG 271
Query 515 AGACGGGGCAGCTGCTAGAGCACAGGTTCGACTACATCTTCTTCACAGGGAGCCCTCGTGTGGGCAAGATTGTT 588
||||.|||||||||||||||||||.|||.||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 272 AGACAGGGCAGCTGCTAGAGCACAAGTTGGACTACATCTTCTTCACAGGGAGCCCTCGTGTGGGCAAGATTGTC 345
Query 589 ATGACTGCTGCCGCCAAGCACCTGACACCTGTCACCCTGGAGCTGGGGGGCAAGAACCCTTGCTACGTGGACGA 662
||||||||||||.|||||||||||||.||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 346 ATGACTGCTGCCACCAAGCACCTGACGCCTGTCACCCTGGAGCTGGGGGGCAAGAACCCCTGCTACGTGGACGA 419
Query 663 CAACTGCGACCCCCAGACCGTGGCCAACCGCGTGGCCTGGTTCCGCTACTTCAACGCCGGCCAGACCTGCGTGG 736
|||||||||||||||||||||||||||||||||||||||||||.||||||||||.|||||||||||||||||||
Sbjct 420 CAACTGCGACCCCCAGACCGTGGCCAACCGCGTGGCCTGGTTCTGCTACTTCAATGCCGGCCAGACCTGCGTGG 493
Query 737 CCCCCGACTACGTCCTATGCAGCCCTGAGATGCAGGAGAGGCTGCTGCCTGCCCTGCAGAGCACCATCACCCGT 810
||||.|||||||||||.||||||||.|||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 494 CCCCTGACTACGTCCTGTGCAGCCCCGAGATGCAGGAGAGGCTGCTGCCCGCCCTGCAGAGCACCATCACCCGT 567
Query 811 TTCTATGGCGACGACCCCCAGAGCTCCCCAAACCTGGGCCGCATCATCAACCAGAAACAGTTCCAGCGGCTGCG 884
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 568 TTCTATGGCGACGACCCCCAGAGCTCCCCAAACCTGGGCCACATCATCAACCAGAAACAGTTCCAGCGGCTGCG 641
Query 885 GGCATTGCTGGGCTGCGGCCGTGTGGCCATTGGGGGCCAGAGCGATGAGAGCGATCGCTACATCGCCCCCACGG 958
|||||||||||||||||||||.|||||||||||||||||||||.|.||||||||||||||||||||||||||||
Sbjct 642 GGCATTGCTGGGCTGCGGCCGCGTGGCCATTGGGGGCCAGAGCAACGAGAGCGATCGCTACATCGCCCCCACGG 715
Query 959 TGCTGGTGGATGTGCAGGAGATGGAGCCTGTGATGCAGGAGGAGATCTTCGGGCCCATCCTGCCCATCGTGAAC 1032
||||||||||.||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TGCTGGTGGACGTGCAGGAGACGGAGCCTGTGATGCAGGAGGAGATCTTCGGGCCCATCCTGCCCATCGTGAAC 789
Query 1033 GTGCAGAGCTTGGACGAGGCCATCGAGTTCATCAACCGGCGGGAGAAGCCCCTGGCCCTGTACGCCTTCTCCAA 1106
|||||||||.||||||||||||||.|||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 790 GTGCAGAGCGTGGACGAGGCCATCAAGTTCATCAACCGGCAGGAGAAGCCCCTGGCCCTGTACGCCTTCTCCAA 863
Query 1107 CAGCAGCCAGGTGGTCAAGCGGGTGCTGACCCAGACCAGCAGCGGGGGCTTCTGTGGGAACGACGGCTTCATGC 1180
||||||||||||.||.||.|.|.|||||...|.||||||||||||..||||..|.||.||.||.|||||||...
Sbjct 864 CAGCAGCCAGGTTGTGAACCAGATGCTGGAGCGGACCAGCAGCGGCAGCTTTGGAGGCAATGAGGGCTTCACCT 937
Query 1181 ACATGACCCTGGCCAG--CCTGCCTTTTGGAGGAGTGGGTGCCAGTGGGATGGGCCGGTACCATGGCAAGTTCT 1252
||||..|.||| |.| |.||||.||.||.|||||.||...|||||||||||||||||||||.|||||||||.
Sbjct 938 ACATATCTCTG--CTGTCCGTGCCATTCGGGGGAGTCGGCCACAGTGGGATGGGCCGGTACCACGGCAAGTTCA 1009
Query 1253 CCTTCGACACCTTCTCCCACCATCGCGCCTGCCTCCTGCGCAGCC-CGGGGATGGAGAAGCTCAACGCCCTCCG 1325
||||||||||||||||||||||.|||.|||||||.|| |||..|| |.||..|||||||..|.||.|...|||.
Sbjct 1010 CCTTCGACACCTTCTCCCACCACCGCACCTGCCTGCT-CGCCCCCTCCGGCCTGGAGAAATTAAAGGAGATCCA 1082
Query 1326 CTACCCGCCGCAATCGCCGCGCCGCCTG-----AGGATGCT-----GCTGGTGGCCATGGAGGC-CCAAGGCTG 1388
||||||.|| |.|| .|||.||| ||.| ||| |||| ||.|||| ||| ||.||
Sbjct 1083 CTACCCACC-CTAT------ACCGACTGGAACCAGCA-GCTGTTACGCTG--GGGCATG--GGCTCCCAG---- 1140
Query 1389 CAGCTGCACACTGCTC 1404
||||||||.||.||.
Sbjct 1141 -AGCTGCACCCTCCTG 1155