Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_00050
• Subject: NM_001354345.1
• Aligned Length: 1422
• Identities: 1016
• Gaps: 285

Alignment

Query    1  ATGGACCCCCTTGGGGACACGCTGCGGCGACTGCGGGAGGCCTTCCACGCGGGGCGCACGCGGCCAGCTGAGTT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCGGGCTGCGCAGCTCCAAGGCCTGGGCCGCTTCCTGCAAGAAAACAAGCAGCTTCTGCACGACGCACTGGCCC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AGGACCTGCACAAGTCAGCCTTCGAGTCGGAGGTGTCTGAGGTTGCCATCAGCCAGGGCGAGGTCACCCTGGCC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CTCAGGAACCTCCGGGCCTGGATGAAGGACGAGC----GTGTGCCCAAGAACCTGGCCACGCAGCTGGACTCCG  292
                                 ||||||||.||.|    ||    |||.|||||||..||.|.||||||||||.|
Sbjct    1  ---------------------ATGAAGGATGAACCACGGT----CCACGAACCTGTTCATGAAGCTGGACTCGG  49

Query  293  CCTTCATCCGGAAGGAGCCCTTTGGCCTGGTCCTCATCATTGCGCCCTGGAACTATCCGCTGAACCTGACGCTG  366
            .|||||||.|||||||.|||||||||||||||||||||||.||.|||||||||||.||.|||||||||||.|||
Sbjct   50  TCTTCATCTGGAAGGAACCCTTTGGCCTGGTCCTCATCATCGCACCCTGGAACTACCCACTGAACCTGACCCTG  123

Query  367  GTGCCCCTCGTGGGAGCCCTCGCTGCAGGGAACTGTGTGGTGCTGAAGCCATCGGAGATTAGCAAGAACGTCGA  440
            ||||.|||.|||||.||||||||.|||||||..||.||||||||||||||.||.||.||.|||.||..|...||
Sbjct  124  GTGCTCCTGGTGGGCGCCCTCGCCGCAGGGAGTTGCGTGGTGCTGAAGCCGTCAGAAATCAGCCAGGGCACAGA  197

Query  441  GAAGATCCTGGCCGAGGTGCTGCCCCAATACGTGGACCAGAGCTGCTTTGCTGTGGTGCTGGGCGGGCCCCAGG  514
            ||||.|||||||.||||||||||||||.|||.|||||||||||||||||||.||||||||||||||.|||||||
Sbjct  198  GAAGGTCCTGGCTGAGGTGCTGCCCCAGTACCTGGACCAGAGCTGCTTTGCCGTGGTGCTGGGCGGACCCCAGG  271

Query  515  AGACGGGGCAGCTGCTAGAGCACAGGTTCGACTACATCTTCTTCACAGGGAGCCCTCGTGTGGGCAAGATTGTT  588
            ||||.|||||||||||||||||||.|||.||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  272  AGACAGGGCAGCTGCTAGAGCACAAGTTGGACTACATCTTCTTCACAGGGAGCCCTCGTGTGGGCAAGATTGTC  345

Query  589  ATGACTGCTGCCGCCAAGCACCTGACACCTGTCACCCTGGAGCTGGGGGGCAAGAACCCTTGCTACGTGGACGA  662
            ||||||||||||.|||||||||||||.||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct  346  ATGACTGCTGCCACCAAGCACCTGACGCCTGTCACCCTGGAGCTGGGGGGCAAGAACCCCTGCTACGTGGACGA  419

Query  663  CAACTGCGACCCCCAGACCGTGGCCAACCGCGTGGCCTGGTTCCGCTACTTCAACGCCGGCCAGACCTGCGTGG  736
            |||||||||||||||||||||||||||||||||||||||||||.||||||||||.|||||||||||||||||||
Sbjct  420  CAACTGCGACCCCCAGACCGTGGCCAACCGCGTGGCCTGGTTCTGCTACTTCAATGCCGGCCAGACCTGCGTGG  493

Query  737  CCCCCGACTACGTCCTATGCAGCCCTGAGATGCAGGAGAGGCTGCTGCCTGCCCTGCAGAGCACCATCACCCGT  810
            ||||.|||||||||||.||||||||.|||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct  494  CCCCTGACTACGTCCTGTGCAGCCCCGAGATGCAGGAGAGGCTGCTGCCCGCCCTGCAGAGCACCATCACCCGT  567

Query  811  TTCTATGGCGACGACCCCCAGAGCTCCCCAAACCTGGGCCGCATCATCAACCAGAAACAGTTCCAGCGGCTGCG  884
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct  568  TTCTATGGCGACGACCCCCAGAGCTCCCCAAACCTGGGCCACATCATCAACCAGAAACAGTTCCAGCGGCTGCG  641

Query  885  GGCATTGCTGGGCTGCGGCCGTGTGGCCATTGGGGGCCAGAGCGATGAGAGCGATCGCTACATCGCCCCCACGG  958
            |||||||||||||||||||||.|||||||||||||||||||||.|.||||||||||||||||||||||||||||
Sbjct  642  GGCATTGCTGGGCTGCGGCCGCGTGGCCATTGGGGGCCAGAGCAACGAGAGCGATCGCTACATCGCCCCCACGG  715

Query  959  TGCTGGTGGATGTGCAGGAGATGGAGCCTGTGATGCAGGAGGAGATCTTCGGGCCCATCCTGCCCATCGTGAAC  1032
            ||||||||||.||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  716  TGCTGGTGGACGTGCAGGAGACGGAGCCTGTGATGCAGGAGGAGATCTTCGGGCCCATCCTGCCCATCGTGAAC  789

Query 1033  GTGCAGAGCTTGGACGAGGCCATCGAGTTCATCAACCGGCGGGAGAAGCCCCTGGCCCTGTACGCCTTCTCCAA  1106
            |||||||||.||||||||||||||.|||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct  790  GTGCAGAGCGTGGACGAGGCCATCAAGTTCATCAACCGGCAGGAGAAGCCCCTGGCCCTGTACGCCTTCTCCAA  863

Query 1107  CAGCAGCCAGGTGGTCAAGCGGGTGCTGACCCAGACCAGCAGCGGGGGCTTCTGTGGGAACGACGGCTTCATGC  1180
            ||||||||||||.||.||.|.|.|||||...|.||||||||||||..||||..|.||.||.||.|||||||...
Sbjct  864  CAGCAGCCAGGTTGTGAACCAGATGCTGGAGCGGACCAGCAGCGGCAGCTTTGGAGGCAATGAGGGCTTCACCT  937

Query 1181  ACATGACCCTGGCCAG--CCTGCCTTTTGGAGGAGTGGGTGCCAGTGGGATGGGCCGGTACCATGGCAAGTTCT  1252
            ||||..|.|||  |.|  |.||||.||.||.|||||.||...|||||||||||||||||||||.|||||||||.
Sbjct  938  ACATATCTCTG--CTGTCCGTGCCATTCGGGGGAGTCGGCCACAGTGGGATGGGCCGGTACCACGGCAAGTTCA  1009

Query 1253  CCTTCGACACCTTCTCCCACCATCGCGCCTGCCTCCTGCGCAGCC-CGGGGATGGAGAAGCTCAACGCCCTCCG  1325
            ||||||||||||||||||||||.|||.|||||||.|| |||..|| |.||..|||||||..|.||.|...|||.
Sbjct 1010  CCTTCGACACCTTCTCCCACCACCGCACCTGCCTGCT-CGCCCCCTCCGGCCTGGAGAAATTAAAGGAGATCCA  1082

Query 1326  CTACCCGCCGCAATCGCCGCGCCGCCTG-----AGGATGCT-----GCTGGTGGCCATGGAGGC-CCAAGGCTG  1388
            ||||||.|| |.||      .|||.|||     ||.| |||     ||||  ||.||||  ||| ||.||    
Sbjct 1083  CTACCCACC-CTAT------ACCGACTGGAACCAGCA-GCTGTTACGCTG--GGGCATG--GGCTCCCAG----  1140

Query 1389  CAGCTGCACACTGCTC  1404
             ||||||||.||.||.
Sbjct 1141  -AGCTGCACCCTCCTG  1155