Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_00051
• Subject: NM_001354345.1
• Aligned Length: 1308
• Identities: 1015
• Gaps: 168

Alignment

Query    1  ATGGACCCCCTTGGGGACACGCTGCGGCGACTGCGGGAGGCCTTCCACGCGGGGCGCACGCGGCCAGCTGAGTT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCGGGCTGCGCAGCTCCAAGGCCTGGGCCGCTTCCTGCAAGAAAACAAGCAGCTTCTGCACGACGCACTGGCCC  148
                                                       |..|||.|     ||.||.||     ||.||
Sbjct    1  -------------------------------------------ATGAAGGA-----TGAACCAC-----GGTCC  21

Query  149  A-GGACCTGCACAAGGCCACGCAGCTGGACTCCGCCTTCATCCGGAAGGAGCCCTTTGGCCTGGTCCTCATCAT  221
            | |.||||      |..||.|.||||||||||.|.|||||||.|||||||.|||||||||||||||||||||||
Sbjct   22  ACGAACCT------GTTCATGAAGCTGGACTCGGTCTTCATCTGGAAGGAACCCTTTGGCCTGGTCCTCATCAT  89

Query  222  TGCGCCCTGGAACTATCCGCTGAACCTGACGCTGGTGCCCCTCGTGGGAGCCCTCGCTGCAGGGAACTGTGTGG  295
            .||.|||||||||||.||.|||||||||||.|||||||.|||.|||||.||||||||.|||||||..||.||||
Sbjct   90  CGCACCCTGGAACTACCCACTGAACCTGACCCTGGTGCTCCTGGTGGGCGCCCTCGCCGCAGGGAGTTGCGTGG  163

Query  296  TGCTGAAGCCATCGGAGATTAGCAAGAACGTCGAGAAGATCCTGGCCGAGGTGCTGCCCCAATACGTGGACCAG  369
            ||||||||||.||.||.||.|||.||..|...||||||.|||||||.||||||||||||||.|||.||||||||
Sbjct  164  TGCTGAAGCCGTCAGAAATCAGCCAGGGCACAGAGAAGGTCCTGGCTGAGGTGCTGCCCCAGTACCTGGACCAG  237

Query  370  AGCTGCTTTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTGCTAGAGCACAGGTTCGACTACATCTT  443
            |||||||||||.||||||||||||||.|||||||||||.|||||||||||||||||||.|||.|||||||||||
Sbjct  238  AGCTGCTTTGCCGTGGTGCTGGGCGGACCCCAGGAGACAGGGCAGCTGCTAGAGCACAAGTTGGACTACATCTT  311

Query  444  CTTCACAGGGAGCCCTCGTGTGGGCAAGATTGTTATGACTGCTGCCGCCAAGCACCTGACACCTGTCACCCTGG  517
            |||||||||||||||||||||||||||||||||.||||||||||||.|||||||||||||.|||||||||||||
Sbjct  312  CTTCACAGGGAGCCCTCGTGTGGGCAAGATTGTCATGACTGCTGCCACCAAGCACCTGACGCCTGTCACCCTGG  385

Query  518  AGCTGGGGGGCAAGAACCCTTGCTACGTGGACGACAACTGCGACCCCCAGACCGTGGCCAACCGCGTGGCCTGG  591
            |||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  386  AGCTGGGGGGCAAGAACCCCTGCTACGTGGACGACAACTGCGACCCCCAGACCGTGGCCAACCGCGTGGCCTGG  459

Query  592  TTCCGCTACTTCAACGCCGGCCAGACCTGCGTGGCCCCCGACTACGTCCTATGCAGCCCTGAGATGCAGGAGAG  665
            |||.||||||||||.|||||||||||||||||||||||.|||||||||||.||||||||.||||||||||||||
Sbjct  460  TTCTGCTACTTCAATGCCGGCCAGACCTGCGTGGCCCCTGACTACGTCCTGTGCAGCCCCGAGATGCAGGAGAG  533

Query  666  GCTGCTGCCTGCCCTGCAGAGCACCATCACCCGTTTCTATGGCGACGACCCCCAGAGCTCCCCAAACCTGGGCC  739
            |||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  534  GCTGCTGCCCGCCCTGCAGAGCACCATCACCCGTTTCTATGGCGACGACCCCCAGAGCTCCCCAAACCTGGGCC  607

Query  740  GCATCATCAACCAGAAACAGTTCCAGCGGCTGCGGGCATTGCTGGGCTGCGGCCGTGTGGCCATTGGGGGCCAG  813
            .||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct  608  ACATCATCAACCAGAAACAGTTCCAGCGGCTGCGGGCATTGCTGGGCTGCGGCCGCGTGGCCATTGGGGGCCAG  681

Query  814  AGCGATGAGAGCGATCGCTACATCGCCCCCACGGTGCTGGTGGATGTGCAGGAGATGGAGCCTGTGATGCAGGA  887
            |||.|.||||||||||||||||||||||||||||||||||||||.||||||||||.||||||||||||||||||
Sbjct  682  AGCAACGAGAGCGATCGCTACATCGCCCCCACGGTGCTGGTGGACGTGCAGGAGACGGAGCCTGTGATGCAGGA  755

Query  888  GGAGATCTTCGGGCCCATCCTGCCCATCGTGAACGTGCAGAGCTTGGACGAGGCCATCGAGTTCATCAACCGGC  961
            |||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||
Sbjct  756  GGAGATCTTCGGGCCCATCCTGCCCATCGTGAACGTGCAGAGCGTGGACGAGGCCATCAAGTTCATCAACCGGC  829

Query  962  GGGAGAAGCCCCTGGCCCTGTACGCCTTCTCCAACAGCAGCCAGGTGGTCAAGCGGGTGCTGACCCAGACCAGC  1035
            .|||||||||||||||||||||||||||||||||||||||||||||.||.||.|.|.|||||...|.|||||||
Sbjct  830  AGGAGAAGCCCCTGGCCCTGTACGCCTTCTCCAACAGCAGCCAGGTTGTGAACCAGATGCTGGAGCGGACCAGC  903

Query 1036  AGCGGGGGCTTCTGTGGGAACGACGGCTTCATGCACATGACCCTGGCCAG--CCTGCCTTTTGGAGGAGTGGGT  1107
            |||||..||||..|.||.||.||.|||||||...||||..|.|||  |.|  |.||||.||.||.|||||.||.
Sbjct  904  AGCGGCAGCTTTGGAGGCAATGAGGGCTTCACCTACATATCTCTG--CTGTCCGTGCCATTCGGGGGAGTCGGC  975

Query 1108  GCCAGTGGGATGGGCCGGTACCATGGCAAGTTCTCCTTCGACACCTTCTCCCACCATCGCGCCTGCCTCCTGCG  1181
            ..|||||||||||||||||||||.|||||||||.||||||||||||||||||||||.|||.|||||||.|| ||
Sbjct  976  CACAGTGGGATGGGCCGGTACCACGGCAAGTTCACCTTCGACACCTTCTCCCACCACCGCACCTGCCTGCT-CG  1048

Query 1182  CAGCC-CGGGGATGGAGAAGCTCAACGCCCTCCGCTACCCGCCGCAATCGCCGCGCCGCCTG-----AGGATGC  1249
            |..|| |.||..|||||||..|.||.|...|||.||||||.|| |.||      .|||.|||     ||.| ||
Sbjct 1049  CCCCCTCCGGCCTGGAGAAATTAAAGGAGATCCACTACCCACC-CTAT------ACCGACTGGAACCAGCA-GC  1114

Query 1250  T-----GCTGGTGGCCATGGAGGC-CCAAGGCTGCAGCTGCACACTGCTC  1293
            |     ||||  ||.||||  ||| ||.||     ||||||||.||.||.
Sbjct 1115  TGTTACGCTG--GGGCATG--GGCTCCCAG-----AGCTGCACCCTCCTG  1155