Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00215
- Subject:
- NM_001177799.1
- Aligned Length:
- 2319
- Identities:
- 722
- Gaps:
- 1524
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCCAACTGTTATTAGTCCAACTGTGGCCCCAAGGACGGGGGCTGAGCCCAGGTCCCCAGGGCCAGTTCCTCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCAGCTCAAGGCAAGACCACCGAGGCTGGAGGTGGACACCCAAGTGGCATCTATTCGGCCATCATTAGCCGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATTTTCCGATCATCGGTGTGAAAGAGAAGACATTTGAGCAGCTCCGCAGGAAGTGCCTAGAGAAGAAAGTTCTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TATCTAGACCCCGAGTTCCCACCGGATGAGACCTCTCTCTTTTACAGTCAGAAGTTCCCCATCCAGTTCGTCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAAGAGACCTCCGGAAATTTGTGAGAATCCCCGGTTTATCATTGGTGGAGCCAACAGGACTGACATCTGCCAAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAGATCTAGGGGACTGCTGGTTTCTTGCAGCCATCGCCTGCCTGACCCTGAATGAGCGGCTGCTTTTCCGAGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATACCCCATGATCAAAGTTTCACTGAAAACTACGCAGGGATCTTCCACTTCCAGTTCTGGCGCTATGGAGACTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGTAGATGTGGTCATTGACGACTGTCTGCCAACATACAACAATCAGCTGGTTTTCACCAAATCCAACCACCGCA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATGAGTTCTGGAGTGCTCTCCTTGAGAAGGCTTATGCCAAGCTCCATGGCTCCTATGAAGCTCTGAAAGGTGGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AATACCACAGAAGCCATGGAGGACTTCACAGGAGGGGTGACAGAGTTTTTTGAGATCAAGGATGCTCCGAGTGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CATGTACAAGATTATGAGGAAAGCTATCGAGAGAGGCTCCCTCATGGGCTGCTCCATTGACACAATTGTTCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGCAGTATGAAACAAGAATGGCCTGTGGGTTGGTGAAAGGGCATGCCTATTCAGTCACTGGGCTGGAGGAGGCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGTTCAAAGGTGAGAAGGTGAAGTTGGTGCGGCTGCGGAACCCCTGGGGCCAGGTGGAGTGGAACGGCTCTTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAGTGATGGTTGGAAGGACTGGAGCTTTGTAGACAAAGATGAGAAGGCCCGTCTACAGCACCAGGTTACTGAGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATGGAGAGTTCTGGATGTCATATGATGACTTCGTCTACCATTTCACGAAGCTGGAGATCTGCAACCTCACAGCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GACGCCCTGGAGTCCGATAAGCTTCAGACCTGGACGGTGTCTGTAAACGAGGGCCGCTGGGTGAGGGGCTGTTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGCTGGAGGCTGCCGAAACTTCCCAGACACTTTCTGGACCAACCCGCAGTACCGTCTCAAGCTTCTGGAGGAAG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACGATGACCCTGAGGACTCTGAGGTAATCTGCAGCTTCCTCGTGGCTCTGATGCAGAAGAACCGGCGCAAGGAC 1332
Query 1 ------------------------------------------------------------ATGCACGGGAACAA 14
|||||||||||.||
Sbjct 1333 CGGAAGCTGGGGGCCAACCTCTTCACTATTGGCTTCGCCATCTACGAGGTTCCCAAAGAGATGCACGGGAATAA 1406
Query 15 GCAGCACCTGCAGAAGGACTTCTTCCTGTACAACGCCTCCAAGGCCAGGAGCAAAACCTACATCAACATGCGGG 88
|||.|||||||||||||||||||||.||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1407 GCAACACCTGCAGAAGGACTTCTTCTTGTACAACGCCTCCAAGGCCAGAAGCAAAACCTACATCAACATGCGGG 1480
Query 89 AGGTGTCCCAGCGCTTCCGCCTGCCTCCCAGCGAGTACGTCATCGTGCCCTCCACCTACGAGCCCCACCAGGAG 162
|||||||||||||||||||||||||.|||||||||||.||||||||.|||||||||||||||||||||||||||
Sbjct 1481 AGGTGTCCCAGCGCTTCCGCCTGCCACCCAGCGAGTATGTCATCGTACCCTCCACCTACGAGCCCCACCAGGAG 1554
Query 163 GGGGAATTCATCCTCCGGGTCTTCTCTGAAAAGAGGAACCTCTCTGAGGAAGTTGAAAATACCATCTCCGTGGA 236
|||||||||||||||||.||||||||.|||||||||||.|||||||||||||.|||||||||.|||||.|||||
Sbjct 1555 GGGGAATTCATCCTCCGAGTCTTCTCCGAAAAGAGGAATCTCTCTGAGGAAGCTGAAAATACAATCTCTGTGGA 1628
Query 237 TCGGCCAGTGAAAAAGAAAAAAACCAAGCCCATCATCTTCGTTTCGGACAGAGCAAACAGCAACAAGGAGCTGG 310
|||||||||| |||||
Sbjct 1629 TCGGCCAGTG-------------CCAAG---------------------------------------------- 1643
Query 311 GTGTGGACCAGGAGTCAGAGGAGGGCAAAGGCAAAACAAGCCCTGATAAGCAAAAGCAGTCCCCACAGCCACAG 384
|
Sbjct 1644 -------------------------------------------------------------------------G 1644
Query 385 CCTGGCAGCTCTGATCAGGAAAGTGAGGAACAGCAACAATTCCGGAACATTTTCAAGCAGATAGCAGGAGATGA 458
||||||..|.|.||.||||||||||||||.|||||.||||||||||||||.||||.||||||.|||||.||.||
Sbjct 1645 CCTGGCCACACAGACCAGGAAAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATCGCAGGCGACGA 1718
Query 459 CATGGAGATCTGTGCAGATGAGCTCAAGAAGGTCCTTAACACAGTCGTGAACAAACACAAGGACCTGAAGACAC 532
|||||||||||||||||||||.||||||||.|||||.||||||||.||||||||||||||||||||||||||||
Sbjct 1719 CATGGAGATCTGTGCAGATGAACTCAAGAATGTCCTCAACACAGTGGTGAACAAACACAAGGACCTGAAGACAC 1792
Query 533 ACGGGTTCACACTGGAGTCCTGCCGTAGCATGATTGCGCTCATGGATACAGATGGCTCTGGAAAGCTCAACCTG 606
|.||||||||.||||||||||||.|.||||||||.||.|||||||||||||||||||||||||..||.||.||.
Sbjct 1793 AAGGGTTCACGCTGGAGTCCTGCAGAAGCATGATAGCTCTCATGGATACAGATGGCTCTGGAAGACTGAATCTT 1866
Query 607 CAGGAGTTCCACCACCTCTGGAACAAGATTAAGGCCTGGCAGAAAATTTTCAAACACTATGACACAGACCAGTC 680
||.||||||||.|||||||||||.|||||.|||||||||||||||||.|||||.|||||||||||||||||.||
Sbjct 1867 CAAGAGTTCCATCACCTCTGGAAAAAGATCAAGGCCTGGCAGAAAATCTTCAAGCACTATGACACAGACCATTC 1940
Query 681 CGGCACCATCAACAGCTACGAGATGCGAAATGCAGTCAACGACGCAGGATTCCACCTCAACAACCAGCTCTATG 754
|||.||||||||.|||||.||||||||||||||||||||.||.|||||.|||||.|||||||.|||.|||||||
Sbjct 1941 CGGTACCATCAATAGCTATGAGATGCGAAATGCAGTCAATGATGCAGGCTTCCATCTCAACAGCCAACTCTATG 2014
Query 755 ACATCATTACCATGCGGTACGCAGACAAACACATGAACATCGACTTTGACAGTTTCATCTGCTGCTTCGTTAGG 828
|||||||.||||||||.||.||.|||||||||||||||||||||||||||||.|||||||||||||||||.|||
Sbjct 2015 ACATCATCACCATGCGCTATGCGGACAAACACATGAACATCGACTTTGACAGCTTCATCTGCTGCTTCGTCAGG 2088
Query 829 CTGGAGGGCATGTTCAGAGCTTTTCATGCATTTGACAAGGATGGAGATGGTATCATCAAGCTCAACGTTCTGGA 902
|||||.||.|||||||||||||||.|.|||||||||||||||||.||||||||||||||.||.||.||.||.||
Sbjct 2089 CTGGAAGGGATGTTCAGAGCTTTTAACGCATTTGACAAGGATGGCGATGGTATCATCAAACTGAATGTACTTGA 2162
Query 903 GTGGCTGCAGCTCACCATGTATGCC 927
||||||||||||.||||||||||||
Sbjct 2163 GTGGCTGCAGCTTACCATGTATGCC 2187
