Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00417
Subject:
XM_011245324.1
Aligned Length:
2338
Identities:
1982
Gaps:
68

Alignment

Query    1  ATGTCTAACGAAGTAGAAACAAGTGCAACCAATGGTCAGCCCGACCAACAGGCCGCACCAAAAGCACCCTCAAA  74
            |||||||||||||||||||||||..||||||||||.|||||.|||||||||||.||.||.|||||.||.|||||
Sbjct    1  ATGTCTAACGAAGTAGAAACAAGCACAACCAATGGCCAGCCTGACCAACAGGCTGCCCCGAAAGCGCCATCAAA  74

Query   75  GAAGGAAAAAAAGAAAGGCCCTGAAAAGACAGATGAATATCTCTTAGCAAGGTTCAAAGGCGATGGTGTAAAAT  148
            ||||||.||.||||||||..|||||||||||||.||.||..|.||.||.|||||||||||.|||||||||||||
Sbjct   75  GAAGGAGAAGAAGAAAGGTTCTGAAAAGACAGACGAGTACTTGTTGGCCAGGTTCAAAGGTGATGGTGTAAAAT  148

Query  149  ATAAGGCCAAGCTGATTGGCATTGATGATGTGCCAGATGCAAGAGGGGATAAAATGAGCCAAGACTCTATGATG  222
            |.|||||||||||.||.||.||||||||||||||.|||||..||||.||.||||||||.||.||.|||||||||
Sbjct  149  ACAAGGCCAAGCTAATCGGTATTGATGATGTGCCTGATGCTCGAGGAGACAAAATGAGTCAGGATTCTATGATG  222

Query  223  AAACTAAAGGGAATGGCGGCAGCTGGTCGGTCTCAGGGACAACACAAACAAAGGATCTGGGTCAACATTTCCCT  296
            |||||.|||||||||||.|||||||||||.|||||||||||||||||.|||||.||||||||||||||||||.|
Sbjct  223  AAACTCAAGGGAATGGCAGCAGCTGGTCGCTCTCAGGGACAACACAAGCAAAGAATCTGGGTCAACATTTCCTT  296

Query  297  TTCTGGGATAAAAATAATTGATGAGAAAACTGGGGTAATAGAGCATGAACATCCAGTAAATAAGATTTCTTTCA  370
            .|||||.||||||||.|||||||||||||||||||||||.||.||||||||||||||||||||||||||.||||
Sbjct  297  GTCTGGCATAAAAATCATTGATGAGAAAACTGGGGTAATTGAACATGAACATCCAGTAAATAAGATTTCCTTCA  370

Query  371  TTGCCCGTGATGTGACAGACAACCGGGCATTTGGTTACGTGTGTGGAGGAGAAGGCCAGCATCAGTTTTTTGCC  444
            ||||.||||||||||||||||||.|.|||||||||||.|||||||||||.||||||||||||||.||||||||.
Sbjct  371  TTGCTCGTGATGTGACAGACAACAGAGCATTTGGTTATGTGTGTGGAGGTGAAGGCCAGCATCAATTTTTTGCT  444

Query  445  ATAAAAACCGGGCAACAGGCTGAACCATTAGTTGTTGATCTTAAAGACCTTTTTCAAGTTATCTATAATGTAAA  518
            ||||||||.|||||||||||||||||||||||.||.||||||||||||||||||||||||||||||||||||||
Sbjct  445  ATAAAAACAGGGCAACAGGCTGAACCATTAGTCGTCGATCTTAAAGACCTTTTTCAAGTTATCTATAATGTAAA  518

Query  519  GAAAAAGGAAGAAGAAAAGAAAAAGATAGAGGAAGCCAGCAAAGCAGTTGAGAATGGGAGTGAGGCCCTAATGA  592
            |||||||||||||||.|||||||||.|.||.|||||||.||||||||..||||||||.||||||||||||||||
Sbjct  519  GAAAAAGGAAGAAGATAAGAAAAAGGTTGAAGAAGCCAACAAAGCAGAAGAGAATGGAAGTGAGGCCCTAATGA  592

Query  593  TTCTAGATGACCAAACTAACAAACTGAAATCGGGTGTTGACCAGATGGATTTGTTTGGGGACATGTCTACACCT  666
            ..||.|||||.|||.||||||||.||||...|||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCCTTGATGATCAAGCTAACAAATTGAAGCTGGGTGTTGACCAGATGGATTTGTTTGGGGACATGTCTACACCT  666

Query  667  CCTGACCTAAATAGTCCAACAGAAAGCAAAGATATCCTGTTAGTGGATCTAAACTCTGAAATCGACACCAATCA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CCTGACCTAAATAGTCCAACAGAAAGCAAAGATATCCTGTTAGTGGATCTAAACTCTGAAATCGACACCAATCA  740

Query  741  GAATTCTTTAAGAGAAAATCCATTCTTAACAAACGGCATCACCTCCTGTTCTCTTCCTCGACCAACGCCTCAGG  814
            |||.|||||||||||||||||||||||||||||.||..||||||||||||||||.||||||||||.||||||||
Sbjct  741  GAACTCTTTAAGAGAAAATCCATTCTTAACAAATGGAGTCACCTCCTGTTCTCTCCCTCGACCAAAGCCTCAGG  814

Query  815  CATCCTTCTTGCCTGAAAATGCCTTTTCTGCCAATCTCAACTTCTTTCCCACCCCTAATCCTGATCCTTTCCGT  888
            ||||||||||||||||.||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct  815  CATCCTTCTTGCCTGAGAACGCCTTTTCTGCCAATCTCAACTTCTTTCCCACCCCTAACCCTGATCCTTTCCGT  888

Query  889  GACGATCCTTTCACACAGCCAGACCAATCGACACCTTCTTCGTTTGATTCTCTCAAATCTCCAGATCAGAAGAA  962
            ||.|||||.||..|||||||||||||||||.||||.|||||||||||||||||||.||||||||||||||||||
Sbjct  889  GATGATCCCTTTGCACAGCCAGACCAATCGGCACCCTCTTCGTTTGATTCTCTCACATCTCCAGATCAGAAGAA  962

Query  963  AGAGAATTCGAGTAGCTCGTCTACTCCGCTGAGTAATGGGCCCCTGAATGGTGATGTTGACTACTTTGGTCAGC  1036
            ||.||.|..||||||||||||||||||.|.||||||.|||||||||||.||||||..|||.|||||||||||||
Sbjct  963  AGCGAGTCTGAGTAGCTCGTCTACTCCACAGAGTAAAGGGCCCCTGAACGGTGATACTGATTACTTTGGTCAGC  1036

Query 1037  AATTTGACCAGATCTCTAACCGGACTGGCAAACAGGAAGCTCAGGCAGGCCCATGGCCCTTTTCAAGTTCGCAA  1110
            |||||||||||.|||||||||||||||||||||.|||||||||||.||||||.|||||||...||||||||||.
Sbjct 1037  AATTTGACCAGCTCTCTAACCGGACTGGCAAACCGGAAGCTCAGGGAGGCCCGTGGCCCTACCCAAGTTCGCAG  1110

Query 1111  ACCCAGCCAGCAGTGAGAACTCAAAATGGGGTATCTGAAAGAGAACAGAACGGCTTCTCTGTCAAATCCTCCCC  1184
            |||||||.|||||||||||||||||||||||||||||||||||||||||||||||||..|.|||||||.|||||
Sbjct 1111  ACCCAGCAAGCAGTGAGAACTCAAAATGGGGTATCTGAAAGAGAACAGAACGGCTTCCATATCAAATCTTCCCC  1184

Query 1185  GAACCCTTTTGTGGGAAGCCCTCCCAAAGGACTGTCCATACAGAATGGCGTAAAGCAGGACTTGGAAAGCTCTG  1258
            |||||||||||||||||||||||||||||||||.||..|||.|||||||||||||||||||||||||||.||||
Sbjct 1185  GAACCCTTTTGTGGGAAGCCCTCCCAAAGGACTATCGGTACCGAATGGCGTAAAGCAGGACTTGGAAAGTTCTG  1258

Query 1259  TCCAGTCCTCACCACATGACTCCATAGCCATTATCCCACCTCCACAAAGTACCAAACCAGGAAGAGGCAGAAGG  1332
            |||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCCAGTCCTCAGCACATGACTCCATAGCCATTATCCCACCTCCACAAAGTACCAAACCAGGAAGAGGCAGAAGG  1332

Query 1333  ACTGCTAAGTCTTCAGCCAATGACTTGCTTGCATCAGACATCTTTGCTCCTCCCGTCTCAGAACCTTCAGGCCA  1406
            |||||||||||||||||.||.|||||||||||.||||||||||||||         ||||||||||.|||||||
Sbjct 1333  ACTGCTAAGTCTTCAGCAAACGACTTGCTTGCTTCAGACATCTTTGC---------CTCAGAACCTCCAGGCCA  1397

Query 1407  GGCGTCACCCACAGGACAACCTACAGCCCTGCAGCCCAACCCTCTGGATCTCTTCAAA-ACAAGTGCTCCTGCC  1479
            |..|||.|||||||||||||||.|||.||.||||.|.|||..|||||||||||||||| .||| ||||||||||
Sbjct 1398  GATGTCCCCCACAGGACAACCTGCAGTCCCGCAGTCGAACTTTCTGGATCTCTTCAAAGGCAA-TGCTCCTGCC  1470

Query 1480  CCAGTGGGGCCCCTGGTGGGTCTAGGTGGTGTAACTGTCACACTCCCTCAGGCAGGACCATGGAACACAGCATC  1553
            ||||||||||||||.||.|||||||||...||..|.||.||||.|||.||.||||||||.||||      |..|
Sbjct 1471  CCAGTGGGGCCCCTTGTAGGTCTAGGTACGGTCCCAGTAACACCCCCCCAAGCAGGACCCTGGA------CGCC  1538

Query 1554  TTTGGTCTTCAATCAGTCCCCTTCAA------TGGCTCCGGGAGCCATGATGGGTGGTCAACCTTCAGGTTTTA  1621
            |.|.||||.||.|      |||||.|      |||..||.||||||||.||..||||.||.|||.|..|||||.
Sbjct 1539  TGTTGTCTACAGT------CCTTCGACAACTGTGGTCCCAGGAGCCATAATAAGTGGCCAGCCTCCCAGTTTTG  1606

Query 1622  GTCAGCCCGTCATTTTTGGTACAAGTCCAGCTGTTTCAGGT-TGGAACCAGCCTTCACCCTTTGCAGCCTCAAC  1694
            |.|||||..||.||||||||||||..|||||.| |.||.|| |||||.|||.||.||.|.||||||.||.||.|
Sbjct 1607  GCCAGCCACTCGTTTTTGGTACAACCCCAGCAG-TACAAGTCTGGAATCAGTCTCCATCATTTGCAACCCCAGC  1679

Query 1695  TCCCCCTCCAGTGCCTGTTGTCTGGGGCCCTTCTGCATCTGTGGCACCCAATGCTTGGTCAACAACAAGCCCTT  1768
            |.||||||||...||....||.|||.|.|||.|..||||||||||.|||||.|||||||||.|.|||||||||.
Sbjct 1680  TTCCCCTCCACCCCCCACAGTTTGGTGTCCTACCACATCTGTGGCGCCCAACGCTTGGTCATCCACAAGCCCTC  1753

Query 1769  TGGGGAATCCTTTTCAGAG---CAATATTTTTCCAGCTCCTGCTGTGTCCACTCAGCCCCCATCC-------AT  1832
            |||||||||||||||||||   .|||||.||||||.||||..|..|||||||||||.||.| |||       ||
Sbjct 1754  TGGGGAATCCTTTTCAGAGTAATAATATCTTTCCACCTCCCACCATGTCCACTCAGTCCTC-TCCTCAGCCTAT  1826

Query 1833  GCACTCCTCTCTCCTGGTCACTCCTCCTCAGCCACCTCCCAGAGCTGGCCCTCCCAAGGACATCTCCAGTGATG  1906
            |...||||||.|.||||.|||.||.|||||.|||||||||.||..||||||.|..||||||||..|||||||.|
Sbjct 1827  GATGTCCTCTGTTCTGGCCACACCGCCTCAACCACCTCCCCGAAATGGCCCACTAAAGGACATTCCCAGTGACG  1900

Query 1907  CCTTCACTGCCTTAGACCCACTTGGGGATAAAGAGATCAAGGATGTGAAAGAAATGTTTAAGGATTTCCAACTG  1980
            |.|||||||.|||||||||.|||||||||||||||.|||||||.||||||||||||||||||||.|||||.|||
Sbjct 1901  CTTTCACTGGCTTAGACCCCCTTGGGGATAAAGAGGTCAAGGAAGTGAAAGAAATGTTTAAGGACTTCCAGCTG  1974

Query 1981  CGGCAGCCACCTGCTGTGCCCGCGCGGAAGGGAGAGCAGACTTCTTCTGGGACTTTGAGTGCCTTTGCCAGTTA  2054
            ||||||||||||..|||.|||.|..|||||||.|||..|.||.|.||||||||||..||.|||||..|||||||
Sbjct 1975  CGGCAGCCACCTCTTGTTCCCTCAAGGAAGGGGGAGACGCCTCCCTCTGGGACTTCAAGCGCCTTCTCCAGTTA  2048

Query 2055  TTTCAACAGCAAGGTTGGCATTCCTCAGGAGAATGCAGACCATGATGACTTTGATGCTAATCAACTATTGAACA  2128
            .|||||||..||.||||||||||||||||||.|||.||||||||||||.||||||||.||||||||.|||||||
Sbjct 2049  CTTCAACAATAAAGTTGGCATTCCTCAGGAGCATGTAGACCATGATGATTTTGATGCCAATCAACTGTTGAACA  2122

Query 2129  AGATCAATGAACCACCAAAGCCAGCTCCCAGACAAGTTTCCCTGCCAGTTACCAAATCTACTGACAATGCATTT  2202
            ||||.||||||||||||||||||||.||.|||||||.|..|||....|.||||||.|||.||||||||.||.|.
Sbjct 2123  AGATTAATGAACCACCAAAGCCAGCCCCGAGACAAGGTGTCCTCTTGGGTACCAAGTCTGCTGACAATTCACTC  2196

Query 2203  GAGAACCCTTTCTTTAAAGATTCTTTTGGT-----TCATCACAAGCCTCTGTGGCTTCTTCTCAACCTGTATCT  2271
            |||||||||||||..||||        |||     ||||||.|..|||||||||   .||||||.||||.||||
Sbjct 2197  GAGAACCCTTTCTCCAAAG--------GGTTCAGCTCATCAAACCCCTCTGTGG---TTTCTCAGCCTGCATCT  2259

Query 2272  TCTGAGATGT----ATAGGGATCCATTT-GGAAATCCTTTTGCC  2310
            |||||    |    |.| |||.||.||| |||||||||||||||
Sbjct 2260  TCTGA----TCCCCACA-GGAGCCCTTTCGGAAATCCTTTTGCC  2298

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