Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00464
- Subject:
- XR_001753160.1
- Aligned Length:
- 4291
- Identities:
- 1106
- Gaps:
- 3181
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTCAAGTTAAAGATAGACACAGTACACACCAGGATCTAGAGGCTGGATTTCATACTCATAGCTCTCCCTAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTTCAGAGAGTTCTGTTATGATCTCTGTTGTAATTACCAATTTGGTTCAAGTTTGTTCTTTAAATGAATATGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTAGAATTCACATATGTTCTGGATGTACTGGAATTAAAAGGATTTAAGAGATCATGGTGTGCATGTTCTAGGAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAATAGGATTTACCAATCCTTGGATGAAGTGCTTGGGAAGTCTTTAAGTGCCATAATCAACTGCCATTTCAAAG 296
Query 1 --------------------------------------------------ATGATTGAAGATAGTGGGAAAAGA 24
||||||||||||||||||||||||
Sbjct 297 AATATAGATGGTTTTGAAAAGTTCATGCTGTCCCTTCATTGAATTTTAGAATGATTGAAGATAGTGGGAAAAGA 370
Query 25 GGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATCCGACTCTC 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATCCGACTCTC 444
Query 99 CACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAAATGCAATTTGCACCTGGTGGACATATGGAATG 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAAATGCAATTTGCACCTGGTGGACATATGGAATG 518
Query 173 TCATAGAAGCATTGCGGGAAAATGCTCTGAACAACCTGGACCCAAACACTGAACTCAACGTGTCCCGCTTAGAG 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCATAGAAGCATTGCGGGAAAATGCTCTGAACAACCTGGACCCAAACACTGAACTCAACGTGTCCCGCTTAGAG 592
Query 247 GCTGTGCTCTCCACTATTTTTTACCAGCTCAACAAACGGATGCCAACCACTCACCAAATCCATGTGGAGCAGTC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCTGTGCTCTCCACTATTTTTTACCAGCTCAACAAACGGATGCCAACCACTCACCAAATCCATGTGGAGCAGTC 666
Query 321 CATCAGCCTCCTCCTTAACTTCCTGCTTGCAGCGTTTGATCCGGAAGGCCATGGTAAAATTTCAGTATTTGCTG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CATCAGCCTCCTCCTTAACTTCCTGCTTGCAGCGTTTGATCCGGAAGGCCATGGTAAAATTTCAGTATTTGCTG 740
Query 395 TCAAAATGGCTTTAGCCACATTGTGTGGAGGGAAGATCATGGACAAATTAAGATATATTTTCTCAATGATTTCT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCAAAATGGCTTTAGCCACATTGTGTGGAGGGAAGATCATGGACAAATTAAGATATATTTTCTCAATGATTTCT 814
Query 469 GACTCCAGTGGGGTGATGGTTTATGGACGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACGGCAGT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GACTCCAGTGGGGTGATGGTTTATGGACGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACGGCAGT 888
Query 543 TTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCCAACAGAAAAAAGTCACGT 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCCAACAGAAAAAAGTCACGT 962
Query 617 TAAATGGTTTCTTGGACACGCTTATGTCAGATCCTCCCCCGCAGTGTCTGGTCTGGTTGCCTCTTCTGCATCGA 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TAAATGGTTTCTTGGACACGCTTATGTCAGATCCTCCCCCGCAGTGTCTGGTCTGGTTGCCTCTTCTGCATCGA 1036
Query 691 CTAGCAAATGTGGAAAATGTCTTCCATCCGGTTGAGTGTTCCTACTGCCACAGTGAGAGTATGATGGGATTTCG 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTAGCAAATGTGGAAAATGTCTTCCATCCGGTTGAGTGTTCCTACTGCCACAGTGAGAGTATGATGGGATTTCG 1110
Query 765 CTACCGATGCCAACAGTGTCACAATTACCAGCTCTGTCAGGACTGCTTCTGGAGGGGACATGCCGGTGGTTCTC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTACCGATGCCAACAGTGTCACAATTACCAGCTCTGTCAGGACTGCTTCTGGAGGGGACATGCCGGTGGTTCTC 1184
Query 839 ATAGCAACCAGCACCAAATGAAAGAGTACACGTCATGG------------------------------------ 876
||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ATAGCAACCAGCACCAAATGAAAGAGTACACGTCATGGGTAAGGCAAGGTCCAGGCAATACTTGGAGTTGGATG 1258
Query 877 -------------------------------------------------------------------------- 876
Sbjct 1259 TGTGAGTGTTGCCCAGAGTTAAAGGGAATATCAAGGATGGTGGCAGAATTAAAGGGCAAACTTACCTTCCATCC 1332
Query 877 -------------------------------------------------------------------------- 876
Sbjct 1333 CAGGTCTAGTATTCAGTCCCCCTTCCTCCCACTCTCCACCCTACTGCGTGCTCTTACTTATTCTGTTGGAACCC 1406
Query 877 -------------------------------------------------------------------------- 876
Sbjct 1407 AGTGTAGCTTCCTGAGATTTAAAATATAGGAAGACTCAAAACTATGTTACTTCTTGGAATATAGATAATTCAGT 1480
Query 877 -----------------------------------------------------------AAATCACCTGCTAAG 891
|||||||||||||||
Sbjct 1481 ACTGATTTAAATAACAACTGAATAGCAAGGACCTTCTGGAACATAATCTTACATTCACAAAATCACCTGCTAAG 1554
Query 892 AAGCTGACTAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCCAGCCGTGAACCTTTGCACCCCATGTTCCCAGA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAGCTGACTAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCCAGCCGTGAACCTTTGCACCCCATGTTCCCAGA 1628
Query 966 TCAGCCTGAGAAGCCACTCAACTTGGCTCACATCGTGCCTCCCAGACCTGTAACCAGCATGAACGACACCCTGT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TCAGCCTGAGAAGCCACTCAACTTGGCTCACATCGTGCCTCCCAGACCTGTAACCAGCATGAACGACACCCTGT 1702
Query 1040 TCTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTTATTACCAGGAGC------------TCGGACGGTGCTT-- 1099
||||||||||||||||||||||||||||||||||||||||||||||| ||..||.| ||||
Sbjct 1703 TCTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTTATTACCAGGAGCATGCTTGAGAGTTCAAACCG-GCTTGA 1775
Query 1100 -----------------TT----GGTGGATGCGTC--------------------------------------- 1113
|| ||| |||||.|
Sbjct 1776 TGAAGAACACAGGCTAATTGCCAGGT--ATGCGGCAAGGCTGGCAGCAGAGTCCTCTTCGTCTCCACCTCAGCA 1847
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1848 GAGAAGTGCTCCTGACATCTCTTTCACCATCGATGCGAATAAGCAGCAAAGGCAGCTGATTGCTGAGCTAGAAA 1921
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1922 ACAAGAACAGAGAAATCTTACAGGAGATCCAGAGACTTCGGCTAGAGCATGAACAAGCTTCTCAGCCCACGCCA 1995
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1996 GAGAAGGCACAGCAAAACCCCACCCTGCTGGCAGAACTCCGGCTCCTCAGACAGCGCAAAGATGAGCTGGAACA 2069
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2070 GAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGAGCTAATGGTCCAGTTGGAGGGTCTCATGAAGCTACTAAAGA 2143
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2144 CTCAGGGGGCAGGCTCTCCCCGCTCCTCCCCCAGCCACACCATCAGCAGGCCAATTCCCATGCCCATCCGGTCA 2217
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2218 GCGTCAGCCTGCTCCACCCCGACGCACACGCCGCAGGACTCCCTCACAGGAGTAGGGGGAGATGTACAAGAGGC 2291
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2292 ATTTGCACAAAGTTCAAGAAGAAACTTAAGGAATGACTTGCTAGTGGCTGCAGATTCCATCACTAACACTATGT 2365
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2366 CCTCTCTTGTGAAAGAGCTGAATTCTGAGGTTGGGAGTGAAACAGAGAGTAATGTGGATTCTGAATTTGCACGG 2439
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2440 ACTCAGTTTGAGGATCTTGTTCCCTCACCAACCTCTGAAAAGGCTTTTCTAGCGCAAATCCATGCCCGAAAACC 2513
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2514 TGGGTACATTCACAGTGGAGCTACCACAAGTACCATGCGTGGCGACATGGTTACGGAGGATGCAGATCCCTATG 2587
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2588 TGCAGCCTGAAGATGAAAACTATGAAAATGACTCTGTCCGGCAGCTGGAGAATGAGCTCCAGATGGAGGAATAC 2661
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2662 CTGAAACAGAAGCTGCAAGATGAAGCTTATCAGGTCAGCTTGCAAGGTTGAATGCAATATCCTTTTATCACACT 2735
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2736 CCTCTCAACTCCACGTCAGCACTGAGACCAGACTCGAGCACCCCTGTCCTGTAAGCGAGACAAAATGGCGTGTG 2809
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2810 TTATTTTGGGGTTTTGTGTTTTTTGGTGGGTTTCTTTCCTTGGCTCTCCAGATTTACTTTTGGGGCCTGTTCTA 2883
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2884 AGTGCAAACCCAGCAAGTTTCACTTGTCCTGTCCATTAGATACAACTACATCTTGCGGGGGTTGTTTCTTTCTT 2957
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2958 GTTCCACAATGAATTGCACATCCATCTCCATCAGAGCTGATAGCCTGTTAATAAGCACTGGTCTAACACAGCCA 3031
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3032 ACCCTCCTCCACAGCGCCATATTAATGGAGGAGGGGAGGAAGGTGAAATCTACTGCATGGGATTCAGGAAACAG 3105
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3106 TTGTGGTTGGTCAGGACGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGTTGTGCTGGAGATTGTGAAAAAT 3179
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3180 GGGTTCTTGAATGATCTACTATAAGGCAGGGAAGGTTCATTTGTAAGTAGTAATGTGAACTGAATTGCATTAAG 3253
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3254 AGTGTGTGGCCTTTGTTGTGATATACTATGTATTTTCTTATATGCATGAGCCAAACTGTTGCATCATAATTTAG 3327
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3328 CACTGATGTCTGCTTTTATTTTGATCATCTTTGTCCACCCTTATTAGTTCTTGGCTGTTAACCGTAGATAGATC 3401
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3402 TTGTAAATCCAGCAACCTTTGGTTGCTGCATTCCCCTTGGTTCGATTCCACGCAAGGAGCCACAAGTGAGAACT 3475
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3476 CCACTGTCCTTAGAAGAAAGGGCATTTTTACTTTTGAACCAAAAAGAGAAAAAAAAATCAGAAGTGTTGCATCT 3549
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3550 TGAGGCGAATTAACTGTAAGACATTTTTAATTATGACTACTGCAATTTGACACCATTTGAAATAATCAATTCAG 3623
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3624 AGACACTAAAGATTTCACAATATTCATTGGTATTGTAAAAAAAAAATACTATTGTATGGATTTTTGTATTGCTG 3697
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3698 TTAAGTATTGTTTTGTGTGTGTGTGTGTGTGTGTGTGTTGGAACCTCCTGGGGACATGTTATATTTTGAAGTGA 3771
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3772 TTAAACTATTTAATTGTGTGTCTATATTTTGGAGTGGAATAATTTCTTCATTAAAAAATGTTTTTAAAAACACT 3845
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3846 ATATCTTGGGTGGTTTATTCCTTTGTTTCAGTGAATCTTTCCTAAAGCAACGTGGAGTCAGTCTGTTGAAAGAA 3919
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3920 GGAAGGCAGGTACTTGCAGTTTAAAGCAGGACCCATTGATGGAATATTGAGCCACCGAGGCAAAATAGCTCACC 3993
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3994 TTCTCTTGCCTTGGGGGATGCATGGTTTTTACCATTCTACTGTTTTATTAGCATCTGTGAGCATCTAATAGAAA 4067
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4068 TACTATTCTGCTATTTATGGAAATCCTTATTATAATTGATATGGAAGTGAGTTTGAAATTCTAACAGCTAACAT 4141
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4142 ATTTCATGTTTGTATCACACACTGTTCTTAACACTTTATGTGACTTCACTCAATTCTTTGAATCCTCTGCATCT 4215
Query 1114 ------------------------------------------------------------------------- 1113
Sbjct 4216 AGCCATGTATTCTGCAAATATTAAGTGCTCAATGGTTTTTTTGTTGAATTACTGAATAAATGAATTAGTGGTG 4288
