Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00464
Subject:
XR_001753160.1
Aligned Length:
4291
Identities:
1106
Gaps:
3181

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTTTCAAGTTAAAGATAGACACAGTACACACCAGGATCTAGAGGCTGGATTTCATACTCATAGCTCTCCCTAGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATTTCAGAGAGTTCTGTTATGATCTCTGTTGTAATTACCAATTTGGTTCAAGTTTGTTCTTTAAATGAATATGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTAGAATTCACATATGTTCTGGATGTACTGGAATTAAAAGGATTTAAGAGATCATGGTGTGCATGTTCTAGGAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAATAGGATTTACCAATCCTTGGATGAAGTGCTTGGGAAGTCTTTAAGTGCCATAATCAACTGCCATTTCAAAG  296

Query    1  --------------------------------------------------ATGATTGAAGATAGTGGGAAAAGA  24
                                                              ||||||||||||||||||||||||
Sbjct  297  AATATAGATGGTTTTGAAAAGTTCATGCTGTCCCTTCATTGAATTTTAGAATGATTGAAGATAGTGGGAAAAGA  370

Query   25  GGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATCCGACTCTC  98
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATCCGACTCTC  444

Query   99  CACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAAATGCAATTTGCACCTGGTGGACATATGGAATG  172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAAATGCAATTTGCACCTGGTGGACATATGGAATG  518

Query  173  TCATAGAAGCATTGCGGGAAAATGCTCTGAACAACCTGGACCCAAACACTGAACTCAACGTGTCCCGCTTAGAG  246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCATAGAAGCATTGCGGGAAAATGCTCTGAACAACCTGGACCCAAACACTGAACTCAACGTGTCCCGCTTAGAG  592

Query  247  GCTGTGCTCTCCACTATTTTTTACCAGCTCAACAAACGGATGCCAACCACTCACCAAATCCATGTGGAGCAGTC  320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCTGTGCTCTCCACTATTTTTTACCAGCTCAACAAACGGATGCCAACCACTCACCAAATCCATGTGGAGCAGTC  666

Query  321  CATCAGCCTCCTCCTTAACTTCCTGCTTGCAGCGTTTGATCCGGAAGGCCATGGTAAAATTTCAGTATTTGCTG  394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CATCAGCCTCCTCCTTAACTTCCTGCTTGCAGCGTTTGATCCGGAAGGCCATGGTAAAATTTCAGTATTTGCTG  740

Query  395  TCAAAATGGCTTTAGCCACATTGTGTGGAGGGAAGATCATGGACAAATTAAGATATATTTTCTCAATGATTTCT  468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCAAAATGGCTTTAGCCACATTGTGTGGAGGGAAGATCATGGACAAATTAAGATATATTTTCTCAATGATTTCT  814

Query  469  GACTCCAGTGGGGTGATGGTTTATGGACGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACGGCAGT  542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GACTCCAGTGGGGTGATGGTTTATGGACGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACGGCAGT  888

Query  543  TTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCCAACAGAAAAAAGTCACGT  616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCCAACAGAAAAAAGTCACGT  962

Query  617  TAAATGGTTTCTTGGACACGCTTATGTCAGATCCTCCCCCGCAGTGTCTGGTCTGGTTGCCTCTTCTGCATCGA  690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TAAATGGTTTCTTGGACACGCTTATGTCAGATCCTCCCCCGCAGTGTCTGGTCTGGTTGCCTCTTCTGCATCGA  1036

Query  691  CTAGCAAATGTGGAAAATGTCTTCCATCCGGTTGAGTGTTCCTACTGCCACAGTGAGAGTATGATGGGATTTCG  764
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CTAGCAAATGTGGAAAATGTCTTCCATCCGGTTGAGTGTTCCTACTGCCACAGTGAGAGTATGATGGGATTTCG  1110

Query  765  CTACCGATGCCAACAGTGTCACAATTACCAGCTCTGTCAGGACTGCTTCTGGAGGGGACATGCCGGTGGTTCTC  838
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CTACCGATGCCAACAGTGTCACAATTACCAGCTCTGTCAGGACTGCTTCTGGAGGGGACATGCCGGTGGTTCTC  1184

Query  839  ATAGCAACCAGCACCAAATGAAAGAGTACACGTCATGG------------------------------------  876
            ||||||||||||||||||||||||||||||||||||||                                    
Sbjct 1185  ATAGCAACCAGCACCAAATGAAAGAGTACACGTCATGGGTAAGGCAAGGTCCAGGCAATACTTGGAGTTGGATG  1258

Query  877  --------------------------------------------------------------------------  876
                                                                                      
Sbjct 1259  TGTGAGTGTTGCCCAGAGTTAAAGGGAATATCAAGGATGGTGGCAGAATTAAAGGGCAAACTTACCTTCCATCC  1332

Query  877  --------------------------------------------------------------------------  876
                                                                                      
Sbjct 1333  CAGGTCTAGTATTCAGTCCCCCTTCCTCCCACTCTCCACCCTACTGCGTGCTCTTACTTATTCTGTTGGAACCC  1406

Query  877  --------------------------------------------------------------------------  876
                                                                                      
Sbjct 1407  AGTGTAGCTTCCTGAGATTTAAAATATAGGAAGACTCAAAACTATGTTACTTCTTGGAATATAGATAATTCAGT  1480

Query  877  -----------------------------------------------------------AAATCACCTGCTAAG  891
                                                                       |||||||||||||||
Sbjct 1481  ACTGATTTAAATAACAACTGAATAGCAAGGACCTTCTGGAACATAATCTTACATTCACAAAATCACCTGCTAAG  1554

Query  892  AAGCTGACTAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCCAGCCGTGAACCTTTGCACCCCATGTTCCCAGA  965
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AAGCTGACTAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCCAGCCGTGAACCTTTGCACCCCATGTTCCCAGA  1628

Query  966  TCAGCCTGAGAAGCCACTCAACTTGGCTCACATCGTGCCTCCCAGACCTGTAACCAGCATGAACGACACCCTGT  1039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TCAGCCTGAGAAGCCACTCAACTTGGCTCACATCGTGCCTCCCAGACCTGTAACCAGCATGAACGACACCCTGT  1702

Query 1040  TCTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTTATTACCAGGAGC------------TCGGACGGTGCTT--  1099
            |||||||||||||||||||||||||||||||||||||||||||||||            ||..||.| ||||  
Sbjct 1703  TCTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTTATTACCAGGAGCATGCTTGAGAGTTCAAACCG-GCTTGA  1775

Query 1100  -----------------TT----GGTGGATGCGTC---------------------------------------  1113
                             ||    |||  |||||.|                                       
Sbjct 1776  TGAAGAACACAGGCTAATTGCCAGGT--ATGCGGCAAGGCTGGCAGCAGAGTCCTCTTCGTCTCCACCTCAGCA  1847

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1848  GAGAAGTGCTCCTGACATCTCTTTCACCATCGATGCGAATAAGCAGCAAAGGCAGCTGATTGCTGAGCTAGAAA  1921

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1922  ACAAGAACAGAGAAATCTTACAGGAGATCCAGAGACTTCGGCTAGAGCATGAACAAGCTTCTCAGCCCACGCCA  1995

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1996  GAGAAGGCACAGCAAAACCCCACCCTGCTGGCAGAACTCCGGCTCCTCAGACAGCGCAAAGATGAGCTGGAACA  2069

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2070  GAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGAGCTAATGGTCCAGTTGGAGGGTCTCATGAAGCTACTAAAGA  2143

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2144  CTCAGGGGGCAGGCTCTCCCCGCTCCTCCCCCAGCCACACCATCAGCAGGCCAATTCCCATGCCCATCCGGTCA  2217

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2218  GCGTCAGCCTGCTCCACCCCGACGCACACGCCGCAGGACTCCCTCACAGGAGTAGGGGGAGATGTACAAGAGGC  2291

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2292  ATTTGCACAAAGTTCAAGAAGAAACTTAAGGAATGACTTGCTAGTGGCTGCAGATTCCATCACTAACACTATGT  2365

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2366  CCTCTCTTGTGAAAGAGCTGAATTCTGAGGTTGGGAGTGAAACAGAGAGTAATGTGGATTCTGAATTTGCACGG  2439

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2440  ACTCAGTTTGAGGATCTTGTTCCCTCACCAACCTCTGAAAAGGCTTTTCTAGCGCAAATCCATGCCCGAAAACC  2513

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2514  TGGGTACATTCACAGTGGAGCTACCACAAGTACCATGCGTGGCGACATGGTTACGGAGGATGCAGATCCCTATG  2587

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2588  TGCAGCCTGAAGATGAAAACTATGAAAATGACTCTGTCCGGCAGCTGGAGAATGAGCTCCAGATGGAGGAATAC  2661

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2662  CTGAAACAGAAGCTGCAAGATGAAGCTTATCAGGTCAGCTTGCAAGGTTGAATGCAATATCCTTTTATCACACT  2735

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2736  CCTCTCAACTCCACGTCAGCACTGAGACCAGACTCGAGCACCCCTGTCCTGTAAGCGAGACAAAATGGCGTGTG  2809

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2810  TTATTTTGGGGTTTTGTGTTTTTTGGTGGGTTTCTTTCCTTGGCTCTCCAGATTTACTTTTGGGGCCTGTTCTA  2883

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2884  AGTGCAAACCCAGCAAGTTTCACTTGTCCTGTCCATTAGATACAACTACATCTTGCGGGGGTTGTTTCTTTCTT  2957

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2958  GTTCCACAATGAATTGCACATCCATCTCCATCAGAGCTGATAGCCTGTTAATAAGCACTGGTCTAACACAGCCA  3031

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3032  ACCCTCCTCCACAGCGCCATATTAATGGAGGAGGGGAGGAAGGTGAAATCTACTGCATGGGATTCAGGAAACAG  3105

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3106  TTGTGGTTGGTCAGGACGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGTTGTGCTGGAGATTGTGAAAAAT  3179

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3180  GGGTTCTTGAATGATCTACTATAAGGCAGGGAAGGTTCATTTGTAAGTAGTAATGTGAACTGAATTGCATTAAG  3253

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3254  AGTGTGTGGCCTTTGTTGTGATATACTATGTATTTTCTTATATGCATGAGCCAAACTGTTGCATCATAATTTAG  3327

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3328  CACTGATGTCTGCTTTTATTTTGATCATCTTTGTCCACCCTTATTAGTTCTTGGCTGTTAACCGTAGATAGATC  3401

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3402  TTGTAAATCCAGCAACCTTTGGTTGCTGCATTCCCCTTGGTTCGATTCCACGCAAGGAGCCACAAGTGAGAACT  3475

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3476  CCACTGTCCTTAGAAGAAAGGGCATTTTTACTTTTGAACCAAAAAGAGAAAAAAAAATCAGAAGTGTTGCATCT  3549

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3550  TGAGGCGAATTAACTGTAAGACATTTTTAATTATGACTACTGCAATTTGACACCATTTGAAATAATCAATTCAG  3623

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3624  AGACACTAAAGATTTCACAATATTCATTGGTATTGTAAAAAAAAAATACTATTGTATGGATTTTTGTATTGCTG  3697

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3698  TTAAGTATTGTTTTGTGTGTGTGTGTGTGTGTGTGTGTTGGAACCTCCTGGGGACATGTTATATTTTGAAGTGA  3771

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3772  TTAAACTATTTAATTGTGTGTCTATATTTTGGAGTGGAATAATTTCTTCATTAAAAAATGTTTTTAAAAACACT  3845

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3846  ATATCTTGGGTGGTTTATTCCTTTGTTTCAGTGAATCTTTCCTAAAGCAACGTGGAGTCAGTCTGTTGAAAGAA  3919

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3920  GGAAGGCAGGTACTTGCAGTTTAAAGCAGGACCCATTGATGGAATATTGAGCCACCGAGGCAAAATAGCTCACC  3993

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 3994  TTCTCTTGCCTTGGGGGATGCATGGTTTTTACCATTCTACTGTTTTATTAGCATCTGTGAGCATCTAATAGAAA  4067

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 4068  TACTATTCTGCTATTTATGGAAATCCTTATTATAATTGATATGGAAGTGAGTTTGAAATTCTAACAGCTAACAT  4141

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 4142  ATTTCATGTTTGTATCACACACTGTTCTTAACACTTTATGTGACTTCACTCAATTCTTTGAATCCTCTGCATCT  4215

Query 1114  -------------------------------------------------------------------------  1113
                                                                                     
Sbjct 4216  AGCCATGTATTCTGCAAATATTAAGTGCTCAATGGTTTTTTTGTTGAATTACTGAATAAATGAATTAGTGGTG  4288

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