Construct: ORF ccsbBroadEn_00464
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005177.1_s300c1, BRDN0000397957
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DTNA (1837)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1837 | DTNA | dystrobrevin alpha | NM_001128175.2 | 100% | 100% | |
| 2 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025601.2 | 100% | 100% | |
| 3 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025602.2 | 100% | 100% | |
| 4 | human | 1837 | DTNA | dystrobrevin alpha | NM_001392.5 | 99.1% | 99.1% | 1002_1010delTGATACTTG |
| 5 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025600.2 | 99.1% | 99.1% | 1002_1010delTGATACTTG |
| 6 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025597.2 | 72.2% | 70% | (many diffs) |
| 7 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025598.2 | 72.2% | 70% | (many diffs) |
| 8 | human | 1837 | DTNA | dystrobrevin alpha | NM_001198941.2 | 72.1% | 69.8% | (many diffs) |
| 9 | human | 1837 | DTNA | dystrobrevin alpha | XM_011525853.3 | 72.1% | 69.8% | (many diffs) |
| 10 | human | 1837 | DTNA | dystrobrevin alpha | XM_024451098.1 | 72.1% | 69.8% | (many diffs) |
| 11 | human | 1837 | DTNA | dystrobrevin alpha | NM_032979.5 | 71.7% | 69.4% | (many diffs) |
| 12 | human | 1837 | DTNA | dystrobrevin alpha | NM_001198945.2 | 70.6% | 48.5% | (many diffs) |
| 13 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025595.1 | 68.1% | 66.8% | (many diffs) |
| 14 | human | 1837 | DTNA | dystrobrevin alpha | NM_032978.7 | 65% | 64% | (many diffs) |
| 15 | human | 1837 | DTNA | dystrobrevin alpha | NM_001391.5 | 64.6% | 63.6% | (many diffs) |
| 16 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025593.2 | 53.9% | 52.4% | (many diffs) |
| 17 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025594.2 | 53.9% | 52.4% | (many diffs) |
| 18 | human | 1837 | DTNA | dystrobrevin alpha | NM_001198940.2 | 53.8% | 52.3% | (many diffs) |
| 19 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025587.2 | 53.8% | 52.3% | (many diffs) |
| 20 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025588.2 | 53.8% | 52.3% | (many diffs) |
| 21 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025589.2 | 53.8% | 52.3% | (many diffs) |
| 22 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025590.2 | 53.8% | 52.3% | (many diffs) |
| 23 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025591.2 | 53.8% | 52.3% | (many diffs) |
| 24 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025585.2 | 53.7% | 52.2% | (many diffs) |
| 25 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025586.2 | 53.7% | 52.2% | (many diffs) |
| 26 | human | 1837 | DTNA | dystrobrevin alpha | NM_032975.3 | 53.6% | 52.1% | (many diffs) |
| 27 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025584.2 | 53.6% | 52.1% | (many diffs) |
| 28 | human | 1837 | DTNA | dystrobrevin alpha | NM_001198939.2 | 53.3% | 51.8% | (many diffs) |
| 29 | human | 1837 | DTNA | dystrobrevin alpha | XM_024451097.1 | 51.6% | 50.7% | (many diffs) |
| 30 | human | 1837 | DTNA | dystrobrevin alpha | XM_005258221.5 | 51.6% | 50.6% | (many diffs) |
| 31 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025578.2 | 51.6% | 50.6% | (many diffs) |
| 32 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025579.2 | 51.6% | 50.6% | (many diffs) |
| 33 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025580.1 | 51.6% | 50.6% | (many diffs) |
| 34 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025581.2 | 51.6% | 50.6% | (many diffs) |
| 35 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025582.2 | 51.6% | 50.6% | (many diffs) |
| 36 | human | 1837 | DTNA | dystrobrevin alpha | XM_024451096.1 | 50.9% | 49.5% | (many diffs) |
| 37 | human | 1837 | DTNA | dystrobrevin alpha | NM_001198938.2 | 50.8% | 49.4% | (many diffs) |
| 38 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025577.2 | 50.8% | 49.4% | (many diffs) |
| 39 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025576.2 | 50.6% | 49.2% | (many diffs) |
| 40 | human | 1837 | DTNA | dystrobrevin alpha | NM_001390.4 | 49.6% | 48.8% | (many diffs) |
| 41 | human | 1837 | DTNA | dystrobrevin alpha | XM_017025575.2 | 48.8% | 47.8% | (many diffs) |
| 42 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753155.1 | 26% | (many diffs) | |
| 43 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753160.1 | 25.7% | (many diffs) | |
| 44 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753153.1 | 25.7% | (many diffs) | |
| 45 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753161.1 | 25.2% | (many diffs) | |
| 46 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753156.1 | 25.2% | (many diffs) | |
| 47 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753163.1 | 22.8% | (many diffs) | |
| 48 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753158.1 | 22.8% | (many diffs) | |
| 49 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753162.1 | 22.3% | (many diffs) | |
| 50 | human | 1837 | DTNA | dystrobrevin alpha | NM_001198943.1 | 17.3% | 16.2% | (many diffs) |
| 51 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753157.1 | 16.2% | (many diffs) | |
| 52 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753152.1 | 16.1% | (many diffs) | |
| 53 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753159.1 | 15.9% | (many diffs) | |
| 54 | human | 1837 | DTNA | dystrobrevin alpha | XR_001753154.1 | 15.9% | (many diffs) | |
| 55 | human | 1837 | DTNA | dystrobrevin alpha | XR_002958166.1 | 13% | (many diffs) | |
| 56 | mouse | 13527 | Dtna | dystrobrevin alpha | NM_010087.4 | 92.8% | 99.1% | (many diffs) |
| 57 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_030250324.1 | 92.8% | 99.1% | (many diffs) |
| 58 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_030250325.1 | 92.8% | 99.1% | (many diffs) |
| 59 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_030250323.1 | 92% | 98.3% | (many diffs) |
| 60 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_030250322.1 | 66.6% | 69.4% | (many diffs) |
| 61 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_030250321.1 | 66.2% | 69% | (many diffs) |
| 62 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_017317817.2 | 60.4% | 63.6% | (many diffs) |
| 63 | mouse | 13527 | Dtna | dystrobrevin alpha | NM_001285811.1 | 60.1% | 63.3% | (many diffs) |
| 64 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_011246835.1 | 60.1% | 63.3% | (many diffs) |
| 65 | mouse | 13527 | Dtna | dystrobrevin alpha | NM_001285817.1 | 49.9% | 52.1% | (many diffs) |
| 66 | mouse | 13527 | Dtna | dystrobrevin alpha | NM_001361215.1 | 49.9% | 52.1% | (many diffs) |
| 67 | mouse | 13527 | Dtna | dystrobrevin alpha | NM_001361217.1 | 49.9% | 52.1% | (many diffs) |
| 68 | mouse | 13527 | Dtna | dystrobrevin alpha | NM_207650.4 | 49.9% | 52.1% | (many diffs) |
| 69 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_030250318.1 | 49.9% | 52.1% | (many diffs) |
| 70 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_030250319.1 | 49.9% | 52.1% | (many diffs) |
| 71 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_030250320.1 | 49.9% | 52.1% | (many diffs) |
| 72 | mouse | 13527 | Dtna | dystrobrevin alpha | NM_001285810.1 | 49.6% | 51.9% | (many diffs) |
| 73 | mouse | 13527 | Dtna | dystrobrevin alpha | NM_001285813.1 | 49.6% | 51.9% | (many diffs) |
| 74 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_030250317.1 | 49.6% | 51.9% | (many diffs) |
| 75 | mouse | 13527 | Dtna | dystrobrevin alpha | NM_001285808.1 | 49.3% | 51.6% | (many diffs) |
| 76 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_011246833.1 | 48.1% | 50.3% | (many diffs) |
| 77 | mouse | 13527 | Dtna | dystrobrevin alpha | NM_001361216.1 | 47% | 49.2% | (many diffs) |
| 78 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_011246838.1 | 46.3% | 48.8% | (many diffs) |
| 79 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_011246830.1 | 46.1% | 48.6% | (many diffs) |
| 80 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_017317811.1 | 46.1% | 48.6% | (many diffs) |
| 81 | mouse | 13527 | Dtna | dystrobrevin alpha | NM_001285807.1 | 45.9% | 48.3% | (many diffs) |
| 82 | mouse | 13527 | Dtna | dystrobrevin alpha | XM_011246827.1 | 43.7% | 46.1% | (many diffs) |
| 83 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_003952492.1 | 20.3% | (many diffs) | |
| 84 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_001782342.1 | 13.3% | (many diffs) | |
| 85 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_001782341.1 | 13.2% | (many diffs) | |
| 86 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_001782340.1 | 13.2% | (many diffs) | |
| 87 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_003952501.1 | 12.9% | (many diffs) | |
| 88 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_003952494.1 | 12.7% | (many diffs) | |
| 89 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_003952498.1 | 12.7% | (many diffs) | |
| 90 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_003952497.1 | 12.6% | (many diffs) | |
| 91 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_003952500.1 | 12.6% | (many diffs) | |
| 92 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_001782338.2 | 12.6% | (many diffs) | |
| 93 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_001782337.2 | 12.4% | (many diffs) | |
| 94 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_003952495.1 | 12.4% | (many diffs) | |
| 95 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_001782334.2 | 12.4% | (many diffs) | |
| 96 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_001782339.2 | 12.3% | (many diffs) | |
| 97 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_003952499.1 | 12.3% | (many diffs) | |
| 98 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_003952493.1 | 12.3% | (many diffs) | |
| 99 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_003952496.1 | 12.1% | (many diffs) | |
| 100 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_001782336.2 | 12.1% | (many diffs) | |
| 101 | mouse | 13527 | Dtna | dystrobrevin alpha | XR_001782335.2 | 12.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1179
- ORF length:
- 1113
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT TGAAGATAGT GGGAAAAGAG GAAATACCAT GGCAGAAAGA AGACAGCTGT 121 TTGCAGAGAT GAGGGCTCAA GATCTGGATC GCATCCGACT CTCCACCTAC AGAACAGCAT 181 GCAAGCTTAG GTTTGTTCAG AAGAAATGCA ATTTGCACCT GGTGGACATA TGGAATGTCA 241 TAGAAGCATT GCGGGAAAAT GCTCTGAACA ACCTGGACCC AAACACTGAA CTCAACGTGT 301 CCCGCTTAGA GGCTGTGCTC TCCACTATTT TTTACCAGCT CAACAAACGG ATGCCAACCA 361 CTCACCAAAT CCATGTGGAG CAGTCCATCA GCCTCCTCCT TAACTTCCTG CTTGCAGCGT 421 TTGATCCGGA AGGCCATGGT AAAATTTCAG TATTTGCTGT CAAAATGGCT TTAGCCACAT 481 TGTGTGGAGG GAAGATCATG GACAAATTAA GATATATTTT CTCAATGATT TCTGACTCCA 541 GTGGGGTGAT GGTTTATGGA CGATATGACC AATTCCTTCG GGAAGTTCTC AAACTACCCA 601 CGGCAGTTTT TGAAGGTCCT TCATTTGGTT ACACAGAACA GTCAGCCAGA TCCTGTTTCT 661 CCCAACAGAA AAAAGTCACG TTAAATGGTT TCTTGGACAC GCTTATGTCA GATCCTCCCC 721 CGCAGTGTCT GGTCTGGTTG CCTCTTCTGC ATCGACTAGC AAATGTGGAA AATGTCTTCC 781 ATCCGGTTGA GTGTTCCTAC TGCCACAGTG AGAGTATGAT GGGATTTCGC TACCGATGCC 841 AACAGTGTCA CAATTACCAG CTCTGTCAGG ACTGCTTCTG GAGGGGACAT GCCGGTGGTT 901 CTCATAGCAA CCAGCACCAA ATGAAAGAGT ACACGTCATG GAAATCACCT GCTAAGAAGC 961 TGACTAATGC ATTAAGCAAG TCCCTGAGCT GTGCTTCCAG CCGTGAACCT TTGCACCCCA 1021 TGTTCCCAGA TCAGCCTGAG AAGCCACTCA ACTTGGCTCA CATCGTGCCT CCCAGACCTG 1081 TAACCAGCAT GAACGACACC CTGTTCTCCC ACTCTGTTCC CTCCTCAGGA AGTCCTTTTA 1141 TTACCAGGAG CTCGGACGGT GCTTTTGGTG GATGCGTCTA CCCAACTTTC TTGTACAAAG 1201 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac