Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00464
- Subject:
- XR_001753161.1
- Aligned Length:
- 4380
- Identities:
- 1105
- Gaps:
- 3269
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTCAAGTTAAAGATAGACACAGTACACACCAGGATCTAGAGGCTGGATTTCATACTCATAGCTCTCCCTAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTTCAGAGAGTTCTGTTATGATCTCTGTTGTAATTACCAATTTGGTTCAAGTTTGTTCTTTAAATGAATATGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTAGAATTCACATATGTTCTGGATGTACTGGAATTAAAAGGATTTAAGAGATCATGGTGTGCATGTTCTAGGAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAATAGGATTTACCAATCCTTGGATGAAGTGCTTGGGAAGTCTTTAAGTGCCATAATCAACTGCCATTTCAAAG 296
Query 1 --------------------------------------------------ATGATTGAAGATAGTGGGAAAAGA 24
||||||||||||||||||||||||
Sbjct 297 AATATAGATGGTTTTGAAAAGTTCATGCTGTCCCTTCATTGAATTTTAGAATGATTGAAGATAGTGGGAAAAGA 370
Query 25 GGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATCCGACTCTC 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATCCGACTCTC 444
Query 99 CACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAAATGCAATTTGCACCTGGTGGACATATGGAATG 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAAATGCAATTTGCACCTGGTGGACATATGGAATG 518
Query 173 TCATAGAAGCATTGCGGGAAAATGCTCTGAACAACCTGGACCCAAACACTGAACTCAACGTGTCCCGCTTAGAG 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCATAGAAGCATTGCGGGAAAATGCTCTGAACAACCTGGACCCAAACACTGAACTCAACGTGTCCCGCTTAGAG 592
Query 247 GCTGTGCTCTCCACTATTTTTTACCAGCTCAACAAACGGATGCCAACCACTCACCAAATCCATGTGGAGCAGTC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCTGTGCTCTCCACTATTTTTTACCAGCTCAACAAACGGATGCCAACCACTCACCAAATCCATGTGGAGCAGTC 666
Query 321 CATCAGCCTCCTCCTTAACTTCCTGCTTGCAGCGTTTGATCCGGAAGGCCATGGTAAAATTTCAGTATTTGCTG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CATCAGCCTCCTCCTTAACTTCCTGCTTGCAGCGTTTGATCCGGAAGGCCATGGTAAAATTTCAGTATTTGCTG 740
Query 395 TCAAAATGGCTTTAGCCACATTGTGTGGAGGGAAGATCATGGACAAATTAAGATATATTTTCTCAATGATTTCT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCAAAATGGCTTTAGCCACATTGTGTGGAGGGAAGATCATGGACAAATTAAGATATATTTTCTCAATGATTTCT 814
Query 469 GACTCCAGTGGGGTGATGGTTTATGGACGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACGGCAGT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GACTCCAGTGGGGTGATGGTTTATGGACGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACGGCAGT 888
Query 543 TTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCCAACAGAAAAAAGTCACGT 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCCAACAGAAAAAAGTCACGT 962
Query 617 TAAATGGTTTCTTGGACACGCTTATGTCAGATCCTCCCCCGCAGTGTCTGGTCTGGTTGCCTCTTCTGCATCGA 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TAAATGGTTTCTTGGACACGCTTATGTCAGATCCTCCCCCGCAGTGTCTGGTCTGGTTGCCTCTTCTGCATCGA 1036
Query 691 CTAGCAAATGTGGAAAATGTCTTCCATCCGGTTGAGTGTTCCTACTGCCACAGTGAGAGTATGATGGGATTTCG 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTAGCAAATGTGGAAAATGTCTTCCATCCGGTTGAGTGTTCCTACTGCCACAGTGAGAGTATGATGGGATTTCG 1110
Query 765 CTACCGATGCCAACAGTGTCACAATTACCAGCTCTGTCAGGACTGCTTCTGGAGGGGACATGCCGGTGGTTCTC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTACCGATGCCAACAGTGTCACAATTACCAGCTCTGTCAGGACTGCTTCTGGAGGGGACATGCCGGTGGTTCTC 1184
Query 839 ATAGCAACCAGCACCAAATGAAAGAGTACACGTCATGG------------------------------------ 876
||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ATAGCAACCAGCACCAAATGAAAGAGTACACGTCATGGGTAAGGCAAGGTCCAGGCAATACTTGGAGTTGGATG 1258
Query 877 -------------------------------------------------------------------------- 876
Sbjct 1259 TGTGAGTGTTGCCCAGAGTTAAAGGGAATATCAAGGATGGTGGCAGAATTAAAGGGCAAACTTACCTTCCATCC 1332
Query 877 -------------------------------------------------------------------------- 876
Sbjct 1333 CAGGTCTAGTATTCAGTCCCCCTTCCTCCCACTCTCCACCCTACTGCGTGCTCTTACTTATTCTGTTGGAACCC 1406
Query 877 -------------------------------------------------------------------------- 876
Sbjct 1407 AGTGTAGCTTCCTGAGATTTAAAATATAGGAAGACTCAAAACTATGTTACTTCTTGGAATATAGATAATTCAGT 1480
Query 877 -----------------------------------------------------------AAATCACCTGCTAAG 891
|||||||||||||||
Sbjct 1481 ACTGATTTAAATAACAACTGAATAGCAAGGACCTTCTGGAACATAATCTTACATTCACAAAATCACCTGCTAAG 1554
Query 892 AAGCTGACTAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCCAGCCGTGAACCTTTGCACCCCATGTTCCCAGA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAGCTGACTAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCCAGCCGTGAACCTTTGCACCCCATGTTCCCAGA 1628
Query 966 TCAGCCTGAGAAGCCACTCAACTTGGCTCACATCGTGCCTCCCAGACCTGTAACCAGCATGAACGACACCCTGT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TCAGCCTGAGAAGCCACTCAACTTGGCTCACATCGTGCCTCCCAGACCTGTAACCAGCATGAACGACACCCTGT 1702
Query 1040 TCTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTTATTACCAGGAGCT---CGGACG------GTGCTT----- 1099
||||||||||||||||||||||||||||||||||||||||||||||.| |.||.| ||||.|
Sbjct 1703 TCTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTTATTACCAGGAGGTTACCTGAGGGAATAAGTGCATCCAGC 1776
Query 1100 --TTGGTGGATG----------CGTC------------------------------------------------ 1113
| ||||.|| |.||
Sbjct 1777 CCT--GTGGCTGAAGAGCATTCCCTCATAAAGCTGTACGTAAATCAGCTTGATCACGGTGCACGCATGCTTGAG 1848
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1849 AGTTCAAACCGGCTTGATGAAGAACACAGGCTAATTGCCAGGTATGCGGCAAGGCTGGCAGCAGAGTCCTCTTC 1922
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1923 GTCTCCACCTCAGCAGAGAAGTGCTCCTGACATCTCTTTCACCATCGATGCGAATAAGCAGCAAAGGCAGCTGA 1996
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1997 TTGCTGAGCTAGAAAACAAGAACAGAGAAATCTTACAGGAGATCCAGAGACTTCGGCTAGAGCATGAACAAGCT 2070
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2071 TCTCAGCCCACGCCAGAGAAGGCACAGCAAAACCCCACCCTGCTGGCAGAACTCCGGCTCCTCAGACAGCGCAA 2144
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2145 AGATGAGCTGGAACAGAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGAGCTAATGGTCCAGTTGGAGGGTCTCA 2218
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2219 TGAAGCTACTAAAGACTCAGGGGGCAGGCTCTCCCCGCTCCTCCCCCAGCCACACCATCAGCAGGCCAATTCCC 2292
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2293 ATGCCCATCCGGTCAGCGTCAGCCTGCTCCACCCCGACGCACACGCCGCAGGACTCCCTCACAGGAGTAGGGGG 2366
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2367 AGATGTACAAGAGGCATTTGCACAAAGTTCAAGAAGAAACTTAAGGAATGACTTGCTAGTGGCTGCAGATTCCA 2440
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2441 TCACTAACACTATGTCCTCTCTTGTGAAAGAGCTGAATTCTGAGGTTGGGAGTGAAACAGAGAGTAATGTGGAT 2514
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2515 TCTGAATTTGCACGGACTCAGTTTGAGGATCTTGTTCCCTCACCAACCTCTGAAAAGGCTTTTCTAGCGCAAAT 2588
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2589 CCATGCCCGAAAACCTGGGTACATTCACAGTGGAGCTACCACAAGTACCATGCGTGGCGACATGGTTACGGAGG 2662
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2663 ATGCAGATCCCTATGTGCAGCCTGAAGATGAAAACTATGAAAATGACTCTGTCCGGCAGCTGGAGAATGAGCTC 2736
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2737 CAGATGGAGGAATACCTGAAACAGAAGCTGCAAGATGAAGCTTATCAGGTCAGCTTGCAAGGTTGAATGCAATA 2810
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2811 TCCTTTTATCACACTCCTCTCAACTCCACGTCAGCACTGAGACCAGACTCGAGCACCCCTGTCCTGTAAGCGAG 2884
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2885 ACAAAATGGCGTGTGTTATTTTGGGGTTTTGTGTTTTTTGGTGGGTTTCTTTCCTTGGCTCTCCAGATTTACTT 2958
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2959 TTGGGGCCTGTTCTAAGTGCAAACCCAGCAAGTTTCACTTGTCCTGTCCATTAGATACAACTACATCTTGCGGG 3032
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3033 GGTTGTTTCTTTCTTGTTCCACAATGAATTGCACATCCATCTCCATCAGAGCTGATAGCCTGTTAATAAGCACT 3106
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3107 GGTCTAACACAGCCAACCCTCCTCCACAGCGCCATATTAATGGAGGAGGGGAGGAAGGTGAAATCTACTGCATG 3180
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3181 GGATTCAGGAAACAGTTGTGGTTGGTCAGGACGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGTTGTGCTG 3254
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3255 GAGATTGTGAAAAATGGGTTCTTGAATGATCTACTATAAGGCAGGGAAGGTTCATTTGTAAGTAGTAATGTGAA 3328
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3329 CTGAATTGCATTAAGAGTGTGTGGCCTTTGTTGTGATATACTATGTATTTTCTTATATGCATGAGCCAAACTGT 3402
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3403 TGCATCATAATTTAGCACTGATGTCTGCTTTTATTTTGATCATCTTTGTCCACCCTTATTAGTTCTTGGCTGTT 3476
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3477 AACCGTAGATAGATCTTGTAAATCCAGCAACCTTTGGTTGCTGCATTCCCCTTGGTTCGATTCCACGCAAGGAG 3550
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3551 CCACAAGTGAGAACTCCACTGTCCTTAGAAGAAAGGGCATTTTTACTTTTGAACCAAAAAGAGAAAAAAAAATC 3624
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3625 AGAAGTGTTGCATCTTGAGGCGAATTAACTGTAAGACATTTTTAATTATGACTACTGCAATTTGACACCATTTG 3698
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3699 AAATAATCAATTCAGAGACACTAAAGATTTCACAATATTCATTGGTATTGTAAAAAAAAAATACTATTGTATGG 3772
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3773 ATTTTTGTATTGCTGTTAAGTATTGTTTTGTGTGTGTGTGTGTGTGTGTGTGTTGGAACCTCCTGGGGACATGT 3846
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3847 TATATTTTGAAGTGATTAAACTATTTAATTGTGTGTCTATATTTTGGAGTGGAATAATTTCTTCATTAAAAAAT 3920
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3921 GTTTTTAAAAACACTATATCTTGGGTGGTTTATTCCTTTGTTTCAGTGAATCTTTCCTAAAGCAACGTGGAGTC 3994
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3995 AGTCTGTTGAAAGAAGGAAGGCAGGTACTTGCAGTTTAAAGCAGGACCCATTGATGGAATATTGAGCCACCGAG 4068
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4069 GCAAAATAGCTCACCTTCTCTTGCCTTGGGGGATGCATGGTTTTTACCATTCTACTGTTTTATTAGCATCTGTG 4142
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4143 AGCATCTAATAGAAATACTATTCTGCTATTTATGGAAATCCTTATTATAATTGATATGGAAGTGAGTTTGAAAT 4216
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4217 TCTAACAGCTAACATATTTCATGTTTGTATCACACACTGTTCTTAACACTTTATGTGACTTCACTCAATTCTTT 4290
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4291 GAATCCTCTGCATCTAGCCATGTATTCTGCAAATATTAAGTGCTCAATGGTTTTTTTGTTGAATTACTGAATAA 4364
Query 1114 -------------- 1113
Sbjct 4365 ATGAATTAGTGGTG 4378
