Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00464
- Subject:
- XR_001753163.1
- Aligned Length:
- 4847
- Identities:
- 1106
- Gaps:
- 3737
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTCAAGTTAAAGATAGACACAGTACACACCAGGATCTAGAGGCTGGATTTCATACTCATAGCTCTCCCTAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTTCAGAGAGTTCTGTTATGATCTCTGTTGTAATTACCAATTTGGTTCAAGTTTGTTCTTTAAATGAATATGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTAGAATTCACATATGTTCTGGATGTACTGGAATTAAAAGGATTTAAGAGATCATGGTGTGCATGTTCTAGGAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAATAGGATTTACCAATCCTTGGATGAAGTGCTTGGGAAGTCTTTAAGTGCCATAATCAACTGCCATTTCAAAG 296
Query 1 --------------------------------------------------ATGATTGAAGATAGTGGGAAAAGA 24
||||||||||||||||||||||||
Sbjct 297 AATATAGATGGTTTTGAAAAGTTCATGCTGTCCCTTCATTGAATTTTAGAATGATTGAAGATAGTGGGAAAAGA 370
Query 25 GGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATCCGACTCTC 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATCCGACTCTC 444
Query 99 CACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAAATGCAATTTGCACCTGGTGGACATATGGAATG 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAAATGCAATTTGCACCTGGTGGACATATGGAATG 518
Query 173 TCATAGAAGCATTGCGGGAAAATGCTCTGAACAACCTGGACCCAAACACTGAACTCAACGTGTCCCGCTTAGAG 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCATAGAAGCATTGCGGGAAAATGCTCTGAACAACCTGGACCCAAACACTGAACTCAACGTGTCCCGCTTAGAG 592
Query 247 GCTGTGCTCTCCACTATTTTTTACCAGCTCAACAAACGGATGCCAACCACTCACCAAATCCATGTGGAGCAGTC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCTGTGCTCTCCACTATTTTTTACCAGCTCAACAAACGGATGCCAACCACTCACCAAATCCATGTGGAGCAGTC 666
Query 321 CATCAGCCTCCTCCTTAACTTCCTGCTTGCAGCGTTTGATCCGGAAGGCCATGGTAAAATTTCAGTATTTGCTG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CATCAGCCTCCTCCTTAACTTCCTGCTTGCAGCGTTTGATCCGGAAGGCCATGGTAAAATTTCAGTATTTGCTG 740
Query 395 TCAAAATGGCTTTAGCCACATTGTGTGGAGGGAAGATCATGGACAAATTAAGATATATTTTCTCAATGATTTCT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCAAAATGGCTTTAGCCACATTGTGTGGAGGGAAGATCATGGACAAATTAAGATATATTTTCTCAATGATTTCT 814
Query 469 GACTCCAGTGGGGTGATGGTTTATGGACGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACGGCAGT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GACTCCAGTGGGGTGATGGTTTATGGACGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACGGCAGT 888
Query 543 TTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCCAACAGAAAAAAGTCACGT 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCCAACAGAAAAAAGTCACGT 962
Query 617 TAAATGGTTTCTTGGACACGCTTATGTCAGATCCTCCCCCGCAGTGTCTGGTCTGGTTGCCTCTTCTGCATCGA 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TAAATGGTTTCTTGGACACGCTTATGTCAGATCCTCCCCCGCAGTGTCTGGTCTGGTTGCCTCTTCTGCATCGA 1036
Query 691 CTAGCAAATGTGGAAAATGTCTTCCATCCGGTTGAGTGTTCCTACTGCCACAGTGAGAGTATGATGGGATTTCG 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTAGCAAATGTGGAAAATGTCTTCCATCCGGTTGAGTGTTCCTACTGCCACAGTGAGAGTATGATGGGATTTCG 1110
Query 765 CTACCGATGCCAACAGTGTCACAATTACCAGCTCTGTCAGGACTGCTTCTGGAGGGGACATGCCGGTGGTTCTC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTACCGATGCCAACAGTGTCACAATTACCAGCTCTGTCAGGACTGCTTCTGGAGGGGACATGCCGGTGGTTCTC 1184
Query 839 ATAGCAACCAGCACCAAATGAAAGAGTACACGTCATGG------------------------------------ 876
||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ATAGCAACCAGCACCAAATGAAAGAGTACACGTCATGGGTAAGGCAAGGTCCAGGCAATACTTGGAGTTGGATG 1258
Query 877 -------------------------------------------------------------------------- 876
Sbjct 1259 TGTGAGTGTTGCCCAGAGTTAAAGGGAATATCAAGGATGGTGGCAGAATTAAAGGGCAAACTTACCTTCCATCC 1332
Query 877 -------------------------------------------------------------------------- 876
Sbjct 1333 CAGGTCTAGTATTCAGTCCCCCTTCCTCCCACTCTCCACCCTACTGCGTGCTCTTACTTATTCTGTTGGAACCC 1406
Query 877 -------------------------------------------------------------------------- 876
Sbjct 1407 AGTGTAGCTTCCTGAGATTTAAAATATAGGAAGACTCAAAACTATGTTACTTCTTGGAATATAGATAATTCAGT 1480
Query 877 -----------------------------------------------------------AAATCACCTGCTAAG 891
|||||||||||||||
Sbjct 1481 ACTGATTTAAATAACAACTGAATAGCAAGGACCTTCTGGAACATAATCTTACATTCACAAAATCACCTGCTAAG 1554
Query 892 AAGCTGACTAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCCAGCCGTGAACCTTTGCACCCCATGTTCCCAGA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAGCTGACTAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCCAGCCGTGAACCTTTGCACCCCATGTTCCCAGA 1628
Query 966 TCAGCCTGAGAAGCCACTCAACTTGGCTCACATCGTGCCTCCCAGACCTGTAACCAGCATGAACGACACCCTGT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TCAGCCTGAGAAGCCACTCAACTTGGCTCACATCGTGCCTCCCAGACCTGTAACCAGCATGAACGACACCCTGT 1702
Query 1040 TCTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTTATTACCAGGAGC------------TCGGACGGTGCTT-- 1099
||||||||||||||||||||||||||||||||||||||||||||||| ||..||.| ||||
Sbjct 1703 TCTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTTATTACCAGGAGCATGCTTGAGAGTTCAAACCG-GCTTGA 1775
Query 1100 -----------------TT----GGTGGATGCGTC--------------------------------------- 1113
|| ||| |||||.|
Sbjct 1776 TGAAGAACACAGGCTAATTGCCAGGT--ATGCGGCAAGGCTGGCAGCAGAGTCCTCTTCGTCTCCACCTCAGCA 1847
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1848 GAGAAGTGCTCCTGACATCTCTTTCACCATCGATGCGAATAAGCAGCAAAGGCAGCTGATTGCTGAGCTAGAAA 1921
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1922 ACAAGAACAGAGAAATCTTACAGGAGATCCAGAGACTTCGGCTAGAGCATGAACAAGCTTCTCAGCCCACGCCA 1995
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1996 GAGAAGGCACAGCAAAACCCCACCCTGCTGGCAGAACTCCGGCTCCTCAGACAGCGCAAAGATGAGCTGGAACA 2069
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2070 GAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGAGCTAATGGTCCAGTTGGAGGGTCTCATGAAGCTACTAAAGG 2143
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2144 AAGAAGAACTGAAGCAGGGAGTAAGTTATGTCCCCTACTGCAGGTCTTAACTAACAGTGGAGGGGCCTGCCGAC 2217
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2218 CTGCGGTTTTCTCATTGCTTTTGCTCTAATGTATGTTCATGCTTCAGTTTGGAAAGAGAAAAAAGTCATACTAA 2291
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2292 TTTGCTTCTTTTTCAATGTAGTGCTTGAATTGAGATATATAAATTTAGCATTTTTTATAACTATCACTACTATC 2365
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2366 CACATCAAAAGAAGAACTATGACATCTTTTAGAAAAGGGAACGAATTGTCATTTATTGGAAACATTTTAGATCC 2439
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2440 CCAGAGGTATAAGTTTCAAACCAGTCTTAGCTTTTCAAGTTGTTGATCAGACCCTTCTCTTAACAGAGAGATAC 2513
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2514 CACAGTCACTAGAGATACCCTGAGGTTCATGTCATCCCAAAACCCACAGCACTCAGAAGCTAACCTCTACACCC 2587
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2588 ACTCACACTGTGAGTATTCAGTTCGGTTTCATTTTACTGAAAACCTGTGAAACCTCTTTTTATAAAAATCAGGC 2661
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2662 AATTAAATCCCTTTTCATCACACAATTATTGAGCCTTGTTCCCCATGGCTCACCAAAATGTGCTCAATTTTGTG 2735
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2736 AGAGAAAGACTGTACTCCATAACTGACTATTCACGTCCCATCTTTTTGGCTCTTCCCCAAAGCAGAATCCTTAC 2809
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2810 TGTTGGTTGACAGTAATCTCTTTTTAAAAAGTAACTCTCAGCTTTTTCCTTAGCACCAGAGCCTTTCGGCTCCG 2883
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2884 GGAGACGAGAGGGTCATTACATACTTTTTTTTTTTTCTGGAAATAGGGGCATTGTGACTTTATAGCCTAAACTG 2957
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2958 GAGCTGTCTGAACCTGTGGTCAGGCTCAAGAGCCAGCAGGGGGAGCAGCAAACTCAAAAAAAAAAACAAATTAA 3031
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3032 ATTAAATTAAATTAAATTAAATAGAAGCAAAATAAAAGCAGCTTTAATTTCAAGTGCATGTACCACGCTATGTA 3105
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3106 TGACAATATATCCCACTCACTAGCATTATTTAAAAGTTTCACATTATTTCCATGGATCAATTAGAACCACAACC 3179
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3180 TGTCCAATTTCAACGTATCTTTCATTTCTTCTGTATGCTCTTTTCTATTATTCATTATGTGTGTTTGTGTGTAA 3253
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3254 CAAAGAATGTTTGGAAAATGCTGGACACATTTTTACCCTTCATTCCCATGGTCTGTAAAAAAGGAAAGTGTAAA 3327
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3328 ATCAATCTGTAATGTCAGACAATAAAGATAATGTATTACATTATTTTGTATTTTGTGAAAAAAATTACTTTACT 3401
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3402 AAATTAAAGTCAAATTTTAACAGAAGACAGTCCCCCTGGGTGAAGGACACATAACACATACAGCCTGTATAATT 3475
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3476 GCCCATGAATGCATACATGGGGTATTGCTATTGTATTTCCAATACACTTAGATCATGGTAAAGAAAAATGCCTT 3549
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3550 CTTCATGATACTTCTCTGCAAATGGCTTCTTTCCTCTCCTGTCTCTTATTTAGCATGTGCATAGAAAAAGGAAA 3623
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3624 TAAGGTTCAATTATAACCTCCCTCCTCCTAGCAGAGAGAGAGGGCAATCATCCTGTCGTCATCAGCCTTGCTTT 3697
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3698 AGCCATTTCCCTTGGGGATACTTTCCAGGCCATTTCCCAGGCAGCAGGATCTTGAAAGGCTCCTATGGACCAGG 3771
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3772 AAGTTCGTAAACAGATGGATGCACAGAGCCAAACTGTGGCAGTGCCCCCAAGGTGGCGCCACTGCCCCCTCACC 3845
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3846 TTCCAGCTCCTCTCCACCAAGCCCCTCAGCAGCTTCTGCATCTCAGGGGGCCAACAGCGGGTACTGCGGTGTCG 3919
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3920 GTACCCAAGGACCAGGGCCCACGTCACCCAGATGTCAGCAATACATCGTCTGGGTAGTGGCAGAGTTTGCCTAT 3993
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3994 TTCACTTATTTATCTTTTTTGCTTTTATACACAAGCCTCTTTTCAAAAAGGACCTGAGGCAGCTTACAACAAAA 4067
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4068 GATATAAACAGTGACTTCATAAAATTGAAATAGAAAAATCAAAAACTAAAGAAAATAAAATGTGAATATGCTAA 4141
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4142 TCTTAAGGGACAAGGATGTTACTCTGCATGTTCTGGCAATGAAGCAAAAAAAAAAAAAAAAGGAAAATTATCGG 4215
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4216 TGGTTTTATCAGTACAGAAATACCACTTCTCAGGGGAACAAAATTTCTGTTGGCATAAAATATGAAAGAAAGTC 4289
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4290 TTCACTGGGAGCTTTATAGGAGTACTGGACGATAGAAAAGGAAAAAAAGCAGTCATAGATTTCATGTGGCTGTT 4363
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4364 TCTTATACTGACCTCAGTCAAAATTAAAAGCAGAACCTTATCAATCCCAGCCCTATAGAGGCGGTTCTGCAAGG 4437
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4438 AAATAAACAAATGCTGTCCAAATATAGACTTCTCATGGTAAAACATGATCTAAGGAGAGAATTTAGAGGTTTTA 4511
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4512 GACTGGCATCTGCTTCTAAATTCTGTTTTTATTTATGAGTGTTTCTCCCCTTTGGGGACATTGTCTTTGTAAAA 4585
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4586 CCAAACTTAGAACACCCCCACACAACAAATTGTGCTGGATTTAATAACCTCTACTTGCTTTATCATAAGTCTGT 4659
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4660 GTGGTTCAATGTAGTGTTTTATTATACTGGCATATATAATTTCTACTTACATTGTTTCTTGTTAGAGGTAATGC 4733
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4734 ATGAATTTATCCCTCTCGAGGAGAGAACATGAATTAAAAAAAATAGTGCCTGTAATATAATGTGATGATTATGA 4807
Query 1114 ------------------------------------- 1113
Sbjct 4808 TATCACAAGCAATAAATTTTTTTTTACAAAACTTGAA 4844
