Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00464
- Subject:
- XR_003952492.1
- Aligned Length:
- 5052
- Identities:
- 1028
- Gaps:
- 3939
Alignment
Query 1 -ATGATTGAAGATAGTGGGAAAAGAGGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTC 73
|||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATGATTGAAGATAGTGGAAAAAGAGGAAACACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTC 74
Query 74 AAGATCTGGATCGCATCCGACTCTCCACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAAATGCAAT 147
|||||||||||||||||||||||||||||||||||||||||||||||||.||.|||||.|||||||||||||||
Sbjct 75 AAGATCTGGATCGCATCCGACTCTCCACCTACAGAACAGCATGCAAGCTGAGATTTGTGCAGAAGAAATGCAAT 148
Query 148 TTGCACCTGGTGGACATATGGAATGTCATAGAAGCATTGCGGGAAAATGCTCTGAACAACCTGGACCCAAACAC 221
|||||||||||||||||.|||||.|||||.|||||||||||.|||||.|||.||||.||||||||||||||||.
Sbjct 149 TTGCACCTGGTGGACATTTGGAACGTCATTGAAGCATTGCGCGAAAACGCTTTGAATAACCTGGACCCAAACAT 222
Query 222 TGAACTCAACGTGTCCCGCTTAGAGGCTGTGCTCTCCACTATTTTTTACCAGCTCAACAAACGGATGCCAACCA 295
.||||||||||||.|||||.|.|||||.||||||||||||||||||||||||||||||||..||||||||||||
Sbjct 223 AGAACTCAACGTGGCCCGCCTGGAGGCGGTGCTCTCCACTATTTTTTACCAGCTCAACAAGAGGATGCCAACCA 296
Query 296 CTCACCAAATCCATGTGGAGCAGTCCATCAGCCTCCTCCTTAACTTCCTGCTTGCAGCGTTTGATCCGGAAGGC 369
|||||||||||||.|||||||||||||||||.|||||.||.|||||||||||.|||||.|||||.|||||||||
Sbjct 297 CTCACCAAATCCACGTGGAGCAGTCCATCAGTCTCCTGCTGAACTTCCTGCTCGCAGCCTTTGACCCGGAAGGC 370
Query 370 CATGGTAAAATTTCAGTATTTGCTGTCAAAATGGCTTTAGCCACATTGTGTGGAGGGAAGATCATGGACAAATT 443
|||||.|||||.||||||||||||||||||||||||||.||.||||||||||||||.||||||||||||||.||
Sbjct 371 CATGGAAAAATCTCAGTATTTGCTGTCAAAATGGCTTTGGCTACATTGTGTGGAGGAAAGATCATGGACAAGTT 444
Query 444 AAGATATATTTTCTCAATGATTTCTGACTCCAGTGGGGTGATGGTTTATGGACGATATGACCAATTCCTTCGGG 517
|||||||||||||||||||||.||||||||||||||.||||||||.||||||.|||||||||||||||||||||
Sbjct 445 AAGATATATTTTCTCAATGATCTCTGACTCCAGTGGAGTGATGGTATATGGAAGATATGACCAATTCCTTCGGG 518
Query 518 AAGTTCTCAAACTACCCACGGCAGTTTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGT 591
|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AAGTTCTCAAACTACCCACAGCAGTTTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGT 592
Query 592 TTCTCCCAACAGAAAAAAGTCACGTTAAATGGTTTCTTGGACACGCTTATGTCAGATCCTCCCCCGCAGTGTCT 665
|||||||||||||||||.|||||.||||||||.||||||||||||||.||||||||.|||||.||.|||||.||
Sbjct 593 TTCTCCCAACAGAAAAAGGTCACCTTAAATGGCTTCTTGGACACGCTCATGTCAGACCCTCCTCCACAGTGCCT 666
Query 666 GGTCTGGTTGCCTCTTCTGCATCGACTAGCAAATGTGGAAAATGTCTTCCATCCGGTTGAGTGTTCCTACTGCC 739
|||.|||.|||||||||||||.|||||.||||||||.|||||||||||||||||.|||||||||||||||||.|
Sbjct 667 GGTATGGCTGCCTCTTCTGCACCGACTGGCAAATGTAGAAAATGTCTTCCATCCAGTTGAGTGTTCCTACTGTC 740
Query 740 ACAGTGAGAGTATGATGGGATTTCGCTACCGATGCCAACAGTGTCACAATTACCAGCTCTGTCAGGACTGCTTC 813
||||||||||.||||||||||||||.||||||||.||||||||||||||.||||||||.||.||||||||||||
Sbjct 741 ACAGTGAGAGCATGATGGGATTTCGATACCGATGTCAACAGTGTCACAACTACCAGCTTTGCCAGGACTGCTTC 814
Query 814 TGGAGGGGACATGCCGGTGGTTCTCATAGCAACCAGCACCAAATGAAAGAGTACACGTCATGGAAATCACCTGC 887
||||||||.|||||.||.|||||||||||||||||||||||||||||.|||||.|||||.||||||||||||||
Sbjct 815 TGGAGGGGCCATGCAGGAGGTTCTCATAGCAACCAGCACCAAATGAAGGAGTATACGTCGTGGAAATCACCTGC 888
Query 888 TAAGAAGCTGACTAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCCAGCCGTGAACCTTTGCACCCCATGTTCC 961
|||||||||.||.||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 889 TAAGAAGCTAACGAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCAAGCCGTGAACCTTTGCACCCCATGTTCC 962
Query 962 CAGATCAGCCTGAGAAGCCACTCAACTTGGCTCACATCGT---------GCCTCCCAGACCTGTAACCAGCATG 1026
||||.||||||||.|||||||||||||||||||||||||| ||||||.||||||||||||||||||
Sbjct 963 CAGACCAGCCTGAAAAGCCACTCAACTTGGCTCACATCGTTGATACTTGGCCTCCGAGACCTGTAACCAGCATG 1036
Query 1027 AACGACACCCTGTTCTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTTATTACCAGGAGCTC---------GGA 1091
||||||||.||.||.||||||||||||||||||||||||||||||||.||.||||||||||| |||
Sbjct 1037 AACGACACACTCTTTTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTCATCACCAGGAGCTCTCCTCCCAAGGA 1110
Query 1092 CGGTGCTTT--------------TGGTGGATGCGTC-------------------------------------- 1113
|.|||...| ||.|||.|..|.|
Sbjct 1111 CAGTGAAGTAGAACAGAACAAAATGCTGGCTAGGGCTGCTCCCGCCTTTCTGAAGGGCAGAGGGATACAGTACA 1184
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1185 GCCTGAATGTGGCAGACAGGCTAGCTGATGAACATGTTCTCATTGGGTTGTATGTCAACATGCTCCGGAACAAC 1258
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1259 CCACCATGTATGCTTGAGAGTTCAAACCGGCTTGATGAAGAACACAGGCTGATCGCCAGGTACGCCGCACGACT 1332
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1333 GGCAGCAGAATCCTCCTCATCACAGCCCACACAGCAGAGGAGTGCCCCTGACATCTCCTTCACCATCGATGCAA 1406
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1407 ATAAACAGCAAAGGCAGCTGATTGCAGAGCTAGAGAACAAGAACAGAGAAATCTTACAAGAGATTCAGAGACTT 1480
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1481 CGGGTAGAACATGAGCAAGCTTCCCAGCCCACGCCAGAGAAAGCTCAGCAGAACCCAACCTTGCTGGCAGAACT 1554
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1555 CCGGCTCCTCAGACAGCGAAAGGATGAGCTAGAACAGAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGAGCTGA 1628
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1629 TGGTCCAGTTGGAAGGTCTCATGAAGCTCCTGAAGACCCAGGGGGCAAGCTCCCCACGCTCTTCCCCCAGCCAC 1702
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1703 ACCATCAGCAGGCCGATCCCCATGCCCATCCGTTCAGCATCTGCCTGTCCCACACCAACGCACACCCCGCAGGA 1776
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1777 CTCCCTCACTGGGGTAGGCGGAGATGTGCAAGAGGCGTTTGCACAAAGTTCGAGAAGGAATCTAAGGAGTGACC 1850
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1851 TGCTGGTGGCTGCAGACTCCATCACCAATACCATGTCCTCTCTGGTGAAGGAGCTGAATTCAGAGGTGGCGAGT 1924
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1925 GAAACAGAAAGTACTGTGGATTCCGAGTTCTCGAGACCTCAGTTTGAGGATCTGGCTCCATCACCGACCTCTGA 1998
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 1999 GAAGGCTTTTCTAGCCCAAATCCACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATG 2072
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2073 GTGACATGGTCCCGGAAGATGGGGATCCTTACACGCAACCCGAGGATGGCAATTATGAGAACGAGTCTGTGCGG 2146
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2147 CAGCTGGAGAATGAGCTGCAGCTGGAGGAGTACCTGAAGCAGAAGCTGCAGGACGAGGCCTACCAGGTACAGGA 2220
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2221 GGCAGCCGCAGCCCCGCCCCTCTCCACCGCCCTCCTCCACGGGGTCCTGCCTATTAAGTGGGCGCCTTCCTCCC 2294
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2295 TCTTCCTTCCCTACCTTTCCGGAATACTCTGGAATTCTCGGTCCACGCATCCCAGACAACAATGTTTTAAATGC 2368
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2369 CTCTTGTAGCTGTCTGTTCTTCCAAATTCCCACCTGGAAAGTGAAAGGGGACTTTGTGACATTGGCAGAATCAT 2442
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2443 GGCGCCTACCAATCCAAACACTTCAGGACTGTGAGAAAAGAATCTTTTTTTTTTTTTTCTCTCTGAAGTTAAAA 2516
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2517 TACAGGGGCCTGGGGATATTGTCCAGTGGTTAGAGCACTTGCAGAGAAAGTGTAGACTGGAGCTTGGGTCCCCA 2590
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2591 GAATCCACTTAAATGTCAGAAAGGCATGGCAGCCCCGCCCGCTTTAATCCAAGCAATCAGCTAAGAAGTCACTG 2664
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2665 AACATAGCAATTGCAATCAAGAATAGTATAATTACCTACTCTTGCCAAAAGTAATGAATTTGACCCGTGGGGAC 2738
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2739 TCTCCTCTGCCTGCTTCTCCACAGGTGTGTTGTGGGCCTCTGGGGGCTCAGGGATGTTTGTCTGGCAGAGACCA 2812
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2813 GCTGGTGCTAGCCCCAGCAGAGGGTTGTTTTCCTATCTGACTTTTAGCCTAATGTCCACACAAGCTTCTCCCCA 2886
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2887 GTCTTAGGTCACTAGTGGCCCTCAGCAGTGAAGGACAGAGAATCAATGAGCTCCACCTGTCTCTTGTTTCTGAG 2960
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 2961 TTATAAAGACTGAGCCTTAAAATGTTCCCTAGCAACCATGATGCTCGAGCTCACTCCAACAAAGCCCTGCCCAA 3034
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3035 AAACGCGCCTTGAGCCTTTTCAGCTGAGCAACTGCCTTTCAGGAGCAGTGAAAATGCTTTTCAAGCCATTGCTT 3108
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3109 GAAAAATGATGGTGATGATGATGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGTTAATGTATTAAGTCATACA 3182
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3183 TCTGTACTACAAAAATGTTCACCTGACTACAAGGCTGTGGTAAGGGCTTAGTCTTTGTGACTTCTGTGGCTCAC 3256
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3257 CCATAGAAAGAAACTAGCCTTGTATGAAGCTGTCAGGGCATCTCTGGGGCATCGAAGGGTTGCTGTCCTACAGG 3330
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3331 CGTGTCCTGTGGGTCTGCACATGGAGGAGAGACATAGCTAGGTCATCAATAGTCGATTTGGGCTACCGGAGATA 3404
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3405 CCTGCTTGTCCCTGCTCTTCAAACTTATCATCCGTGTCTGGGGTTTAGTGACAACAGTAACTATAATTTTAGAT 3478
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3479 TTTTTTAGGTGACTTTTCTTCAGTCTACAACAAATACTACATTCTCAATGTTCATGGTCCATGAGCAAATGAAA 3552
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3553 AGGGAGTTCTATTAATGACAAGATCTAGCTGGAGTTTTGCTTTGAACAATAAATTCTCTCTCTTTGCCTTCCCA 3626
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3627 TGCTCGATGTTCTCAAGGAAAGGAGTGGGGAAGGGACCATGTGTTCTCACTCAGTGTGTGTCCTGGAGTATGGT 3700
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3701 GGCGTGGTTTTCCTCAAAGGCCGTGTAAGCTGGGGTGACAGGACGGACGGAATGCATCTGCGGCTCTCTGGACT 3774
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3775 CTCTCTCTCCCACTCTCTCTGTCTCTGTGCATGGCTTCCAGCCAAATAATTCACCAGCTTGACTGCCTCACGGA 3848
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3849 CTTGACATGTCACCTTTCTCGTTTGTGTCCTTTGTCACCCACAGGTCAGCTTGCAAGGTTGAATGCAATGCCCT 3922
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3923 TTTCTCACTCTCCTCTCAACTCCACGTCAGCACTGAGACCAGACTCAAGCACCCCTGTCCTGTAGCCGAGACAA 3996
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 3997 AATGGCGTGTGTTGTTTTGGGGTTTTGTGATTGTCGGTGGATTTCTTTCCTTGGCTCTCCAAATTTACTTTTGG 4070
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4071 GGCCTGTTCTAAATGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAACTGTATCTCACAGGGATGG 4144
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4145 TTCTTTCTTATCCCACCATGAATTGCACACCCACGTCTATCGAAGCTGGTGGCCTATGAATGAGCATTGATCTA 4218
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4219 GCACAGCCAAGCCTCCCCACAGCATTGTGGTCAGGGAGGTGGGTGAAATCTACTGTATAGGATTCAGGAACTGG 4292
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4293 TTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGTTGGAGACTATGAAGATG 4366
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4367 GATTATCGGATGATCTATAATAAGGCAGGGAAGGTTCATTTGTAAGTAGTAATATGAACTGAATTGCATTAAGA 4440
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4441 TTGTGGCCTTTGTGTGATATATATACTATGTATTTTCTTATATGCATGAGCCAAACTGTTGCGATATAATTTAG 4514
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4515 CACTGATGTCTGCTCTTATTTTTGACCATCTTCGTCCACTGTTATTAGTTCTTGGCTGTTAAGTGTAGATAGAT 4588
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4589 ACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAA 4662
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4663 CTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCTTTGAACCAAAAAGAAAAAGAAAAAAGTCACAAGCATTC 4736
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4737 ATTGTATTTTGAGGCTAATTAACATAAGACATTTTAAATTGTGACTACTGTAATTTGACCTCATTTGAAATAAC 4810
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4811 CAATCCAGAAACACTAAAGAGTTCACTATATTCATCGTTGTAACAAAACTACTATAGTATGTTGTTTTGTTTTG 4884
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4885 TTGATATTGCTGTTAAGTATTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGAACCTCCTGGGGA 4958
Query 1114 -------------------------------------------------------------------------- 1113
Sbjct 4959 CATGTTATATTTTGAAGTGATTAAACTATTTAATTGTGTGTCTATATTTTGGAATGGAATTATTTCTTCATTAA 5032
Query 1114 -------------------- 1113
Sbjct 5033 AAATGTTTTTTAAAACACTA 5052
