Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_00499
• Subject: NM_001322268.1
• Aligned Length: 1221
• Identities: 669
• Gaps: 474

Alignment

Query    1  ATGGAGAGTGCAATCACGCTGTGGCAGTTCCTGTTGCAGTTGCTGCTGGATCAGAAACATGAGCATTTGATCTG  74
            ||||||||||||||||||||||||||||||||.|||||.|||||||||||.||||||||||||||..|.|||||
Sbjct    1  ATGGAGAGTGCAATCACGCTGTGGCAGTTCCTCTTGCACTTGCTGCTGGACCAGAAACATGAGCACCTCATCTG  74

Query   75  CTGGACCTCGAACGATGGTGAATTCAAGCTCCTCAAAGCAGAAGAAGTGGCCAAGCTGTGGGGACTCCGAAAAA  148
            ||||||.|||||||||||.||.||||||||||||||.||.|||||||||||||||||||||||.|||||.||.|
Sbjct   75  CTGGACATCGAACGATGGCGAGTTCAAGCTCCTCAAGGCGGAAGAAGTGGCCAAGCTGTGGGGCCTCCGCAAGA  148

Query  149  ACAAAACAAATATGAACTATGATAAGCTGAGCAGAGCCCTGCGATACTATTATGACAAGAACATCATCAAGAAG  222
            ||||.||.||.||||||||.||.||||||||||||||.|||.||||||||||.||||||||||||||||||||.
Sbjct  149  ACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCGCTGAGATACTATTACGACAAGAACATCATCAAGAAA  222

Query  223  GTGATCGGGCAGAAGTTTGTGTACAAGTTTGTCTCTTTCCCGGAGATCCTGAAGATGGATCCTCACGCGGTGGA  296
            |||||||||||||||||||||||||||||.||||||||||||||.||||||||.|||||||||||||||||.||
Sbjct  223  GTGATCGGGCAGAAGTTTGTGTACAAGTTCGTCTCTTTCCCGGATATCCTGAAAATGGATCCTCACGCGGTAGA  296

Query  297  GATCAGCCGGGAGAGCCTTCTGCTGCAGGACAGCGACTGCAAGGCGTCTCCGGAGGGCCGCGAGGCCCACAAAC  370
            ||||||||||||||||||.||||||||||||.|||||||.||||.|||.|||||.|||||.||||.|||||..|
Sbjct  297  GATCAGCCGGGAGAGCCTCCTGCTGCAGGACGGCGACTGTAAGGTGTCCCCGGAAGGCCGAGAGGTCCACAGGC  370

Query  371  ACGGCCTGGCCGCCCTCAGAAGCACGAGCCGCAACGAATACATCCACTCAGGCCTGTACTCGTCCTTCACCATT  444
            |||||.||.||.|.||||.|||..|.|||||||||||.|||.|||||||.|||||.|||||||||||||||||.
Sbjct  371  ACGGCTTGTCCTCTCTCAAAAGTGCCAGCCGCAACGAGTACCTCCACTCGGGCCTCTACTCGTCCTTCACCATC  444

Query  445  AATTCCCTGCAGAACCCACCAGACGCCTTCAAGGCCATCAAGACGGAGAAGCTGGAGGAGCCGCCCGAAGACAG  518
            ||.||||||||||||.|.|||||.||||||||||||||||||||||||||||||||||||||....||.|||||
Sbjct  445  AACTCCCTGCAGAACGCTCCAGAGGCCTTCAAGGCCATCAAGACGGAGAAGCTGGAGGAGCCCTGTGATGACAG  518

Query  519  CCCCCCCGTGGAAGAAGTCAGGACTGTGATCAGGTTTGTGACCAATAAAACCGACAAGCACGTCACCAGGCCGG  592
            .|||||.|||||||||||||||||||||||||||                                        
Sbjct  519  TCCCCCTGTGGAAGAAGTCAGGACTGTGATCAGG----------------------------------------  552

Query  593  TGGTGTCCCTGCCTTCCACGTCAGAGGCTGCGGCGGCGTCCGCCTTCCTGGCCTCGTCCGTCTCGGCCAAGATC  666
                                                                                      
Sbjct  553  --------------------------------------------------------------------------  552

Query  667  TCCTCTTTAATGTTGCCAAACGCTGCCAGTATTTCATCCGCCTCACCCTTCTCATCTCGGTCCCCGTCCCTGTC  740
                                                                                      
Sbjct  553  --------------------------------------------------------------------------  552

Query  741  CCCCAACTCACCCCTCCCTTCTGAACACAGAAGCCTCTTCCTGGAGGCCGCCTGCCATGACTCCGATTCCCTGG  814
                                                                                      
Sbjct  553  --------------------------------------------------------------------------  552

Query  815  AGCCCTTGAACCTGTCATCGGGCTCCAAGACCAAGTCTCCATCTCTTCCCCCAAAGGCCAAAAAACCCAAAGGC  888
                                                                      ||||||||||||||||
Sbjct  553  ----------------------------------------------------------CAAAAAACCCAAAGGC  568

Query  889  TTGGAAATCTCAGCGCCCCCGCTGGTGCTCTCCGGCACCGACATCGGCTCCATCGCCCTCAACAGCCCAGCCCT  962
            |||||||||||.||.||||..|||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  569  TTGGAAATCTCTGCACCCCAACTGTTGCTCTCCGGCACCGACATCGGCTCCATCGCCCTCAACAGCCCAGCCCT  642

Query  963  CCCCTCGGGATCCCTCACCCCAGCCTTCTTCACCGCACAGACACCAAATGGATTGCTTCTGACTCCGAGTCCAC  1036
            ||||||.|||||||||||.||||||||||||||||||||||||||||.||||.||.|||||.|..|||||||.|
Sbjct  643  CCCCTCAGGATCCCTCACTCCAGCCTTCTTCACCGCACAGACACCAAGTGGACTGTTTCTGGCCTCGAGTCCGC  716

Query 1037  TGCTCTCCAGCATACATTTCTGGAGCAGCCTTAGTCCAGTTGCTCCGCTGAGTCCTGCCAGGCTGCAAGGGCCA  1110
            ||||..||||||||||.||||||||||||||                                           
Sbjct  717  TGCTGCCCAGCATACACTTCTGGAGCAGCCT-------------------------------------------  747

Query 1111  AGCACGCTGTTCCAGTTCCCCACACTGCTTAATGGCCACATGCCAGTGCCAATCCCCAGTCTGGACAGAGCTGC  1184
                                                                                      
Sbjct  748  --------------------------------------------------------------------------  747

Query 1185  TTCTCCAGTACTGCTTTCTTCAAACTCTCAGAAATCC  1221
                                                 
Sbjct  748  -------------------------------------  747