Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00507
- Subject:
- XR_002956604.1
- Aligned Length:
- 2952
- Identities:
- 1215
- Gaps:
- 1737
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGAAAAGATGAAGAAAGCCAAGAAAAGGGACCAGAAGAGAAAGCAGAAAGACAGGAGGAAGAAAGGGAGAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCCAGGCAGTCGCACTGTGAACAGAACAGGAGAAGGCGAAGCGGGGCAAAGTTCCCTGCCCACCGACGCCAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGCTTGGATGACTTGCCTCGTTTCATAATTCACTTACTGTCTGCACCAGCCGGCCTCCAGCCTGGCTGGACCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCTGCCTGTGTGGCCCGGAGCCAGAGGCCCCCACACTCCCAGCTGCTCTTCTACAGATGCCATCAACGAGCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACTCTGGGTGGCTCCACTGTCTAAGCCTGGAGAGTCACCGCCGAGGGATGAGGACGCGCCAGCCCGGGGGAAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCGCCAGCTGCTTTCGCGGCCCCAAGCGCGCAGCGCCCAGCAGCCGCGCCGAGCCTGACACGCTGTCCTCTCCC 444
Query 1 -------------------------------------------------ATGGAACGGCTGCAGAAGCAACCAC 25
|||||||||||||||||||||||||
Sbjct 445 CTCGCGCACAGGGCTCTGCGAGTGACCCGGCGGGCGAGCTCCGTGCTGCATGGAACGGCTGCAGAAGCAACCAC 518
Query 26 TTACCTCCCCCGGGAGCGTGAGCCCCTCCCGAGATTCCAGTGTGCCTGGCTCTCCCTCCAGCATCGTGGCCAAG 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTACCTCCCCCGGGAGCGTGAGCCCCTCCCGAGATTCCAGTGTGCCTGGCTCTCCCTCCAGCATCGTGGCCAAG 592
Query 100 ATGGACAATCAGGTGCTGGGCTACAAGGACCTGGCTGCCATCCCCAAGGACAAGGCCATCCTGGACATCGAGCG 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGGACAATCAGGTGCTGGGCTACAAGGACCTGGCTGCCATCCCCAAGGACAAGGCCATCCTGGACATCGAGCG 666
Query 174 GCCCGACCTCATGATCTACGAGCCTCACTTCACTTATTCCCTCCTGGAACACGTGGAGCTGCCTCGCAGCCGCG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCCCGACCTCATGATCTACGAGCCTCACTTCACTTATTCCCTCCTGGAACACGTGGAGCTGCCTCGCAGCCGCG 740
Query 248 AGCGCTCGCTGTCACCCAAATCCACATCCCCCCCACCATCCCCAGAGGTGTGGGCGGACAGCCGGTCGCCTGGA 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGCGCTCGCTGTCACCCAAATCCACATCCCCCCCACCATCCCCAGAGGTGTGGGCGGACAGCCGGTCGCCTGGA 814
Query 322 ATCATCTCTCAGGCCTCGGCCCCCAGAACCACTGGAACCCCCCGGACCAGCCTGCCCCATTTCCACCACCCTGA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATCATCTCTCAGGCCTCGGCCCCCAGAACCACTGGAACCCCCCGGACCAGCCTGCCCCATTTCCACCACCCTGA 888
Query 396 GACCTCCCGCCCAGATTCCAACATCTACAAGAAGCCTCCCATCTATAAGCAGAGAGAGTCCGTGGGAGGCAGCC 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GACCTCCCGCCCAGATTCCAACATCTACAAGAAGCCTCCCATCTATAAGCAGAGAGAGTCCGTGGGAGGCAGCC 962
Query 470 CTCAGACCAAGCACCTCATCGAGGATCTCATCATCGAGTCATCCAAGTTTCCTGCAGCCCAGCCCCCAGACCCC 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTCAGACCAAGCACCTCATCGAGGATCTCATCATCGAGTCATCCAAGTTTCCTGCAGCCCAGCCCCCAGACCCC 1036
Query 544 AACCAGCCAGCCAAAATCGAAACCGACTACTGGCCATGCCCCCCGTCTCTGGCTGTTGTGGAGACAGAATGGAG 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AACCAGCCAGCCAAAATCGAAACCGACTACTGGCCATGCCCCCCGTCTCTGGCTGTTGTGGAGACAGAATGGAG 1110
Query 618 GAAGCGGAAGGCGTCTCGGAGGGGAGCAGAGGAAGAGGAGGAGGAGGAAGATGACGACTCTGGAGAGGAGATGA 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GAAGCGGAAGGCGTCTCGGAGGGGAGCAGAGGAAGAGGAGGAGGAGGAAGATGACGACTCTGGAGAGGAGATGA 1184
Query 692 AGGCTCTCAGGGAGCGTCAGAGAGAGGAACTCAGTAAGGTTACTTCCAACTTGGGAAAGATGATCTTGAAAGAA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGGCTCTCAGGGAGCGTCAGAGAGAGGAACTCAGTAAGGTTACTTCCAACTTGGGAAAGATGATCTTGAAAGAA 1258
Query 766 GAGATGGAAAAGTCATTGCCGATCCGAAGGAAAACCCGCTCTCTGCCTGACCGGACACCCTTCCATACCTCCTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GAGATGGAAAAGTCATTGCCGATCCGAAGGAAAACCCGCTCTCTGCCTGACCGGACACCCTTCCATACCTCCTT 1332
Query 840 GCACCAGGGAACGTCTAAATCTTCCTCTCTCCCCGCCTATGGCAGGACCACCCTGAGCCGGCTACAGTCCACAG 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCACCAGGGAACGTCTAAATCTTCCTCTCTCCCCGCCTATGGCAGGACCACCCTGAGCCGGCTACAGTCCACAG 1406
Query 914 AGTTCAGCCCATCAGGGAGTGAGACTGGAAGCCCAGGCCTG--------------------------------- 954
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGTTCAGCCCATCAGGGAGTGAGACTGGAAGCCCAGGCCTGCAGGTGAGTGCCTCCTGGAGGGGAACAGGCAGA 1480
Query 955 -------------------------------------------------------------------------- 954
Sbjct 1481 GCAGCAGAAGCTGGGTCCTGGCACCCGAAAGTGTCAGGGGAAGGGGGGTGTGGGGCCACAGAGTTGCCTGGTGA 1554
Query 955 ------------------------------------------------------------------------CA 956
||
Sbjct 1555 AGAAGAAGAAGCCGGGGTAAGGCTGGGAAGGTCTCCCTGCCCCGCTCTGGCTCACTGCGGCTTTGGTCTCCCCA 1628
Query 957 GAACGGAGAGGGCCAGAGGGGGAGGATGGACCGGGGGAACTCCCTGCCCTGTGTGCTGGAGCAGAAGATCTATC 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GAACGGAGAGGGCCAGAGGGGGAGGATGGACCGGGGGAACTCCCTGCCCTGTGTGCTGGAGCAGAAGATCTATC 1702
Query 1031 CCTATGAAATGCTAGTGGTGACCAACAAGGGGCGAACCAAGCTGCCACCGGGGGTGGATCGGATGCGGCTTGAG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CCTATGAAATGCTAGTGGTGACCAACAAGGGGCGAACCAAGCTGCCACCGGGGGTGGATCGGATGCGGCTTGAG 1776
Query 1105 AGGCATCTGTCTGCCGAGGACTTCTCAAGGGTATTTGCCATGTCCCCTGAAGAGTTTGGCAAGCTGGCTCTGTG 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AGGCATCTGTCTGCCGAGGACTTCTCAAGGGTATTTGCCATGTCCCCTGAAGAGTTTGGCAAGCTGGCTCTGTG 1850
Query 1179 GAAGCGGAATGAGCTCAAGAAGAAGGCCTCTCTCTTC------------------------------------- 1215
|||||||||||||||||||||||||||||||||||||
Sbjct 1851 GAAGCGGAATGAGCTCAAGAAGAAGGCCTCTCTCTTCTGATGGCCCCCACCTGCTCCGGGACGGCCCCCTTACC 1924
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 1925 CCTGCTGCTTCAGGGTTTTTCCCCGGCGGGTTGGGAGGGGCAGGAGGTGGGGTGGAAATAGGGTGGGCTCCTTT 1998
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 1999 CCTCAGGTAGAGTGGGGGGCCAAAACCTCTGCAGTCCCCGGCAGTGAGCTATGGACTTTCTTCCCCCTCACAAG 2072
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2073 GCTGGGGGCCTCCTGCTCTCGTCCCTGGCCCTCCCTGCACAGGGCAAAGCCAGTCTGGGCTCTGGCACACAGAG 2146
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2147 TTCATGTTTGCGCCCTCTCCCTGCCCCTCACCCCAGAGGGTGAGGAGGAATGAGGGGCATTGGTGGTTAGGCCG 2220
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2221 GTTGGCTGTCTTGAACAGCTGGAGGGAAGATGCAGGGGTGGGAAGCGGCCAGGCAGAAAGAGCTCCAGGCTCTT 2294
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2295 GTGTCGCCCACCCAGCCCTCCCATACTCACTCCTGACAGCTTTCCTGCACTGCAGCCTCCTGCTCCTCTGACTC 2368
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2369 TAGTGGGAACAGGCCCCAGCTCAGCCTCCGGCAGGGAGGTCACCCCTCCACTTCAGCTTGCCCTGACCTCCGCT 2442
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2443 CGCAAACCCCGAGCTTCCAAGCCTTTTGCTCCAGCCCTGCGGCTTCCCCAGAAGCCTGGGCTTAGGGTGGAGAT 2516
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2517 GCCGCCTACACACGATCCTGGCCCTCCACCTGCCTCCAGGCCACGAAATGGGAATTCCAGCACTAAGCCAGGCA 2590
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2591 CCGGGCAGAAGCTGGGCCTTCCGCCTCCCTTGGATGGGGTCAAGAGGCCAGGCCTGGCACATTTTGGAGTGTCC 2664
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2665 TGGCTACCAGCTCTCACCTACACCCACGCACCCCCCCACACACTATGCTCTCTCAAGAATGTAATTTATTGGGG 2738
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2739 CCCCCCCAGCTGCTTTCCTCACCTGCCCCTGCCCTACCTTACACCCCCAGCTTGACTTCTTTCCAGTCCACGTG 2812
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2813 TGTATATAATGATATCTATATTTTTGCCCAGGTCTGGGTATTGCTCCTGCCCAGACCCTGACATCCCTTTCCAC 2886
Query 1216 ------------------------------------------------------------------ 1215
Sbjct 2887 TGTGTGTGTGACCATGCTGGGGGAGGGGGACTCTGCTTGGAATTAAAAGGTTGCATTGGGTCCCTA 2952
