Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00507
- Subject:
- XR_002956620.1
- Aligned Length:
- 2592
- Identities:
- 1146
- Gaps:
- 1422
Alignment
Query 1 -----------------------AT-----------GGAA------CGG-----CTGCAGAAGCAACCACTTAC 29
|| |||| ||| |||.|..||..|||..||||
Sbjct 1 CCTAAGCCGGCATTTTTCCTGTTATTTGTGCTCCGGGGAAGCGCCGCGGGGTTCCTGGAAGAGACACCTATTAC 74
Query 30 CT---CCCCCGGG---AGCGTGAGCC-----------------CCTCCCGAGATTC--------CAGTGTGCCT 72
|| |.||.||| ||.|..|||| ||||.||.|..|| |||.|.|.||
Sbjct 75 CTAGGCTCCTGGGGGAAGTGACAGCCCGTGGATCTGGCCTACGCCTCTCGGGCCTCTGTGGCCTCAGAGCGTCT 148
Query 73 GG------CT---------------------------------------CTCCCTCCAGCATCG---------- 91
|| || ||||.|.|.||||.|
Sbjct 149 GGGCCACACTGTCTGGGAAGAGGGCTCTGCGAGTGACCCGGCGGGCGAGCTCCGTGCTGCATGGAACGGCTGCA 222
Query 92 --TGGCCAAGATGGACAATCAGGTGCTGGGCTACAAGGACCTGGCTGCCATCCCCAAGGACAAGGCCATCCTGG 163
.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAAGGCCAAGATGGACAATCAGGTGCTGGGCTACAAGGACCTGGCTGCCATCCCCAAGGACAAGGCCATCCTGG 296
Query 164 ACATCGAGCGGCCCGACCTCATGATCTACGAGCCTCACTTCACTTATTCCCTCCTGGAACACGTGGAGCTGCCT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACATCGAGCGGCCCGACCTCATGATCTACGAGCCTCACTTCACTTATTCCCTCCTGGAACACGTGGAGCTGCCT 370
Query 238 CGCAGCCGCGAGCGCTCGCTGTCACCCAAATCCACATCCCCCCCACCATCCCCAGAGGTGTGGGCGGACAGCCG 311
||||||||| ||||||||||||||||||||
Sbjct 371 CGCAGCCGC---------------------------------------------GAGGTGTGGGCGGACAGCCG 399
Query 312 GTCGCCTGGAATCATCTCTCAGGCCTCGGCCCCCAGAACCACTGGAACCCCCCGGACCAGCCTGCCCCATTTCC 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GTCGCCTGGAATCATCTCTCAGGCCTCGGCCCCCAGAACCACTGGAACCCCCCGGACCAGCCTGCCCCATTTCC 473
Query 386 ACCACCCTGAGACCTCCCGCCCAGATTCCAACATCTACAAGAAGCCTCCCATCTATAAGCAGAGAGAGTCCGTG 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ACCACCCTGAGACCTCCCGCCCAGATTCCAACATCTACAAGAAGCCTCCCATCTATAAGCAGAGAGAGTCCGTG 547
Query 460 GGAGGCAGCCCTCAGACCAAGCACCTCATCGAGGATCTCATCATCGAGTCATCCAAGTTTCCTGCAGCCCAGCC 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GGAGGCAGCCCTCAGACCAAGCACCTCATCGAGGATCTCATCATCGAGTCATCCAAGTTTCCTGCAGCCCAGCC 621
Query 534 CCCAGACCCCAACCAGCCAGCCAAAATCGAAACCGACTACTGGCCATGCCCCCCGTCTCTGGCTGTTGTGGAGA 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 CCCAGACCCCAACCAGCCAGCCAAAATCGAAACCGACTACTGGCCATGCCCCCCGTCTCTGGCTGTTGTGGAGA 695
Query 608 CAGAATGGAGGAAGCGGAAGGCGTCTCGGAGGGGAGCAGAGGAAGAGGAGGAGGAGGAAGATGACGACTCTGGA 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 CAGAATGGAGGAAGCGGAAGGCGTCTCGGAGGGGAGCAGAGGAAGAGGAGGAGGAGGAAGATGACGACTCTGGA 769
Query 682 GAGGAGATGAAGGCTCTCAGGGAGCGTCAGAGAGAGGAACTCAGTAAGGTTACTTCCAACTTGGGAAAGATGAT 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GAGGAGATGAAGGCTCTCAGGGAGCGTCAGAGAGAGGAACTCAGTAAGGTTACTTCCAACTTGGGAAAGATGAT 843
Query 756 CTTGAAAGAAGAGATGGAAAAGTCATTGCCGATCCGAAGGAAAACCCGCTCTCTGCCTGACCGGACACCCTTCC 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CTTGAAAGAAGAGATGGAAAAGTCATTGCCGATCCGAAGGAAAACCCGCTCTCTGCCTGACCGGACACCCTTCC 917
Query 830 ATACCTCCTTGCACCAGGGAACGTCTAAATCTTCCTCTCTCCCCGCCTATGGCAGGACCACCCTGAGCCGGCTA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 ATACCTCCTTGCACCAGGGAACGTCTAAATCTTCCTCTCTCCCCGCCTATGGCAGGACCACCCTGAGCCGGCTA 991
Query 904 CAGTCCACAGAGTTCAGCCCATCAGGGAGTGAGACTGGAAGCCCAGGCCTG----------------------- 954
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 CAGTCCACAGAGTTCAGCCCATCAGGGAGTGAGACTGGAAGCCCAGGCCTGCAGGTGAGTGCCTCCTGGAGGGG 1065
Query 955 -------------------------------------------------------------------------- 954
Sbjct 1066 AACAGGCAGAGCAGCAGAAGCTGGGTCCTGGCACCCGAAAGTGTCAGGGGAAGGGGGGTGTGGGGCCACAGAGT 1139
Query 955 -------------------------------------------------------------------------- 954
Sbjct 1140 TGCCTGGTGAAGAAGAAGAAGCCGGGGTAAGGCTGGGAAGGTCTCCCTGCCCCGCTCTGGCTCACTGCGGCTTT 1213
Query 955 --------CAGAACGGAGAGGGCCAGAGGGGGAGGATGGACCGGGGGAACTCCCTGCCCTGTGTGCTGGAGCAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 GGTCTCCCCAGAACGGAGAGGGCCAGAGGGGGAGGATGGACCGGGGGAACTCCCTGCCCTGTGTGCTGGAGCAG 1287
Query 1021 AAGATCTATCCCTATGAAATGCTAGTGGTGACCAACAAGGGGCGAACCAAGCTGCCACCGGGGGTGGATCGGAT 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 AAGATCTATCCCTATGAAATGCTAGTGGTGACCAACAAGGGGCGAACCAAGCTGCCACCGGGGGTGGATCGGAT 1361
Query 1095 GCGGCTTGAGAGGCATCTGTCTGCCGAGGACTTCTCAAGGGTATTTGCCATGTCCCCTGAAGAGTTTGGCAAGC 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GCGGCTTGAGAGGCATCTGTCTGCCGAGGACTTCTCAAGGGTATTTGCCATGTCCCCTGAAGAGTTTGGCAAGC 1435
Query 1169 TGGCTCTGTGGAAGCGGAATGAGCTCAAGAAGAAGGCCTCTCTCTTC--------------------------- 1215
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TGGCTCTGTGGAAGCGGAATGAGCTCAAGAAGAAGGCCTCTCTCTTCTGATGGCCCCCACCTGCTCCGGGACGG 1509
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 1510 CCCCCTTACCCCTGCTGCTTCAGGGTTTTTCCCCGGCGGGTTGGGAGGGGCAGGAGGTGGGGTGGAAATAGGGT 1583
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 1584 GGGCTCCTTTCCTCAGGTAGAGTGGGGGGCCAAAACCTCTGCAGTCCCCGGCAGTGAGCTATGGACTTTCTTCC 1657
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 1658 CCCTCACAAGGCTGGGGGCCTCCTGCTCTCGTCCCTGGCCCTCCCTGCACAGGGCAAAGCCAGTCTGGGCTCTG 1731
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 1732 GCACACAGAGTTCATGTTTGCGCCCTCTCCCTGCCCCTCACCCCAGAGGGTGAGGAGGAATGAGGGGCATTGGT 1805
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 1806 GGTTAGGCCGGTTGGCTGTCTTGAACAGCTGGAGGGAAGATGCAGGGGTGGGAAGCGGCCAGGCAGAAAGAGCT 1879
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 1880 CCAGGCTCTTGTGTCGCCCACCCAGCCCTCCCATACTCACTCCTGACAGCTTTCCTGCACTGCAGCCTCCTGCT 1953
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 1954 CCTCTGACTCTAGTGGGAACAGGCCCCAGCTCAGCCTCCGGCAGGGAGGTCACCCCTCCACTTCAGCTTGCCCT 2027
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2028 GACCTCCGCTCGCAAACCCCGAGCTTCCAAGCCTTTTGCTCCAGCCCTGCGGCTTCCCCAGAAGCCTGGGCTTA 2101
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2102 GGGTGGAGATGCCGCCTACACACGATCCTGGCCCTCCACCTGCCTCCAGGCCACGAAATGGGAATTCCAGCACT 2175
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2176 AAGCCAGGCACCGGGCAGAAGCTGGGCCTTCCGCCTCCCTTGGATGGGGTCAAGAGGCCAGGCCTGGCACATTT 2249
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2250 TGGAGTGTCCTGGCTACCAGCTCTCACCTACACCCACGCACCCCCCCACACACTATGCTCTCTCAAGAATGTAA 2323
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2324 TTTATTGGGGCCCCCCCAGCTGCTTTCCTCACCTGCCCCTGCCCTACCTTACACCCCCAGCTTGACTTCTTTCC 2397
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2398 AGTCCACGTGTGTATATAATGATATCTATATTTTTGCCCAGGTCTGGGTATTGCTCCTGCCCAGACCCTGACAT 2471
Query 1216 -------------------------------------------------------------------------- 1215
Sbjct 2472 CCCTTTCCACTGTGTGTGTGACCATGCTGGGGGAGGGGGACTCTGCTTGGAATTAAAAGGTTGCATTGGGTCCC 2545
Query 1216 -- 1215
Sbjct 2546 TA 2547
