Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00520
- Subject:
- XR_873890.1
- Aligned Length:
- 2387
- Identities:
- 1338
- Gaps:
- 956
Alignment
Query 1 ---------------------------------------------------------------------ATGGA 5
|||||
Sbjct 1 CCCGAGGAAATCTCCAGCTAAATGCTCAAAATATAAAACACTGAGCTAATATTTGCGAAGAGGAGCAGAATGGA 74
Query 6 TGGATTTTATGACCAGCAAGTGCCTTACATGGTCACCAATAGTCAGCGTGGGAGAAATTGTAACGAGAAACCAA 79
||||||||||||||||||||||||||||.||||||||||.|||||||||||||||||.||||.|||||||||||
Sbjct 75 TGGATTTTATGACCAGCAAGTGCCTTACGTGGTCACCAACAGTCAGCGTGGGAGAAACTGTACCGAGAAACCAA 148
Query 80 CAAATGTCAGGAAAAGAAAATTCATTAACAGAGATCTGGCTCATGATTCAGAAGAACTCTTTCAAGATCTAAGT 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 149 CAAATGTCAGGAAAAGAAAATTCATTAACAGAGATCTGGCTCATGATTCAGAAGAACTCTTTCAAGATCTGAGT 222
Query 154 CAATTACAGGAAACATGGCTTGCAGAAGCTCAGGTACCTGACAATGATGAGCAGTTTGTACCAGACTATCAGGC 227
||.|||||.||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 223 CAGTTACAAGAAACATGGCTTGCTGAAGCTCAGGTACCTGACAATGATGAGCAGTTTGTTCCAGACTATCAGGC 296
Query 228 TGAAAGTT---------------------TGGCTTTTCATGGCCTGCCACTGAAAATCAAGAAAGAACCCCACA 280
|||||||| ||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 297 TGAAAGTTATATGTTTGTTCTGTTTTTAGTGGCTTTTCATGGCCTCCCACTGAAAATCAAGAAAGAACCCCACA 370
Query 281 GTCCATGTTCAGAAATCAGCTCTGCCTGCAGTCAAGAACAGCCCTTTAAATTCAGCTATGGAGAAAAGTGCCTG 354
|.||||||||||||.||.|.|||||.|||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 371 GCCCATGTTCAGAACTCGGGTCTGCTTGCAGTCAAGAGCAGCCCTTTAAATTCAGCTATGGAGAAAAGTGCCTG 444
Query 355 TACAATGTCAGTGCCTATGATCAGAAGCCACAAGTGGGAATGAGGCCCTCCAACCCCCCCACACCATCCAGCAC 428
|.|||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||
Sbjct 445 TGCAATGTCAGTGCCTATGATCAGAAGCCACAAGTGGGAATGAGGCCCTCCAATCCCCCGACACCATCCAGCAC 518
Query 429 GCCAGTGTCCCCACTGCATCATGCATCTCCAAACTCAACTCATACACCGAAACCTGACCGGGCCTTCCCAGCTC 502
.||||||||||||||.||.|||||||||||||||.||.|||||||.||||||||||||||||||||||||||||
Sbjct 519 TCCAGTGTCCCCACTACACCATGCATCTCCAAACACAGCTCATACTCCGAAACCTGACCGGGCCTTCCCAGCTC 592
Query 503 ACCTCCCTCCATCGCAGTCCATACCAGATAGCAGCTACCCCATGGACCACAGATTTCGCCGCCAGCTTTCTGAA 576
||||||||||.||.||||||||||||||.||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACCTCCCTCCTTCTCAGTCCATACCAGACAGCACCTACCCCATGGACCACAGATTTCGCCGCCAGCTTTCTGAA 666
Query 577 CCCTGTAACTCCTTTCCTCCTTTGCCGACGATGCCAAGGGAAGGACGTCCTATGTACCAACGCCAGATGTCTGA 650
||||||||.||.|||||||||||||||||.||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 667 CCCTGTAATTCTTTTCCTCCTTTGCCGACAATGCCAAGGGAAGGGCGTCCTATGTACCAACGCCAGATGTCTGA 740
Query 651 GCCAAACATCCCCTTCCCACCACAAGGCTTTAAGCAGGAGTACCACGACCCAGTGTATGAACACAACACCATGG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|.||||||||
Sbjct 741 GCCAAACATCCCCTTCCCACCACAAGGCTTTAAGCAGGAGTACCACGACCCAGTCTATGAACATACCACCATGG 814
Query 725 TTGGCAGTGCGGCCAGCCAAAGCTTTCCCCCTCCTCTGATGATTAAACAGGAACCCAGAGATTTTGCATATGAC 798
|||||.||||.||||||||||||||.|||||||||.|||||||.||||||||||||||||||||||||||||||
Sbjct 815 TTGGCGGTGCAGCCAGCCAAAGCTTCCCCCCTCCTTTGATGATCAAACAGGAACCCAGAGATTTTGCATATGAC 888
Query 799 TCAGAAGTGCCTAGCTGCCACTCCATTTATATGAGGCAAGAAGGCTTCCTGGCTCATCCCAGCAGAACAGAAGG 872
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 889 TCAGAAGTGCCTAGCTGCCACTCCATTTATATGAGGCAAGAAGGCTTCCTGGCTCATCCAAGCAGAACAGAAGG 962
Query 873 CTGTATGTTTGAAAAGGGCCCCAGGCAGTTTTATGATGACACCTGTGTTGTCCCAGAAAAATTCGATGGAGACA 946
|||.||||||||.|||||.|||||||||||.|||||||||||||||||.|||||.||.||.||||||||.||||
Sbjct 963 CTGCATGTTTGAGAAGGGTCCCAGGCAGTTCTATGATGACACCTGTGTGGTCCCGGAGAAGTTCGATGGGGACA 1036
Query 947 TCAAACAAGAGCCAGGAATGTATCGGGAAGGACCCACATACCAACGGCGAGGATCACTTCAGCTCTGGCAGTTT 1020
|.||.||||||||.||||||||.|||||||||||||..|||||..||||||||||.||.|||||||||||||||
Sbjct 1037 TTAAGCAAGAGCCTGGAATGTACCGGGAAGGACCCATGTACCAGTGGCGAGGATCCCTCCAGCTCTGGCAGTTT 1110
Query 1021 TTGGTAGCTCTTCTGGATGACCCTTCAAATTCTCATTTTATTGCCTGGACTGGTCGAGGCATGGAATTTAAACT 1094
||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||||||||||||||
Sbjct 1111 TTGGTAGCTCTTCTGGATGACCCTTCAAATTCTCATTTCATTGCCTGGACTGGACGAGGCATGGAATTTAAACT 1184
Query 1095 GATTGAGCCTGAAGAGGTGGCCCGACGTTGGGGCATTCAGAAAAACAGGCCAGCTATGAACTATGATAAACTTA 1168
|||||||||.||||||||||||||.|||||||||||||||||.||||||||.||.|||||||||||.|||||||
Sbjct 1185 GATTGAGCCCGAAGAGGTGGCCCGGCGTTGGGGCATTCAGAAGAACAGGCCGGCGATGAACTATGACAAACTTA 1258
Query 1169 GCCGTTCACTCCGCTATTACTATGAGAAAGGAATTATGCAAAAGGTGGCTGGAGAGAGATATGTCTACAAGTTT 1242
|.|||||.|||||||||||.||||||||.|||||.||||||||||||||||||||.|||||.||.|||||.|||
Sbjct 1259 GTCGTTCTCTCCGCTATTATTATGAGAAGGGAATCATGCAAAAGGTGGCTGGAGAAAGATACGTGTACAAATTT 1332
Query 1243 GTGTGTGATCCAGAAGCCCTTTTCTCCATGGCCTTTCCAGATAATCAGCGTCCACTGCTGAAGACAGACATGGA 1316
||||||||.||.||||||||||||||.|||||||||||.|||||.|||||.||||||||||||||.||||||||
Sbjct 1333 GTGTGTGACCCGGAAGCCCTTTTCTCTATGGCCTTTCCGGATAACCAGCGCCCACTGCTGAAGACGGACATGGA 1406
Query 1317 ACGTCACATCAACGAGGAGGACACAGTGCCTCTTTCTCACTTTGATGAGAGCATGGCCTACATGCCGGAAGGGG 1390
|||||||||||||||.|||||||||||.|||||.|||||||||||||||||||||.||||||||||.|||||||
Sbjct 1407 ACGTCACATCAACGAAGAGGACACAGTTCCTCTGTCTCACTTTGATGAGAGCATGACCTACATGCCTGAAGGGG 1480
Query 1391 GCTGCTGCAACCCCCACCCCTACAACGAAGGCTACGTGTAT--------------------------------- 1431
|||||||||||||.|||||||||||||||||.||||||||.
Sbjct 1481 GCTGCTGCAACCCTCACCCCTACAACGAAGGATACGTGTACTAAGATGAGTAACCCGTCAAGCAAGGCACCCCG 1554
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1555 TGCTTTGCCTCTTTTTTTTCAAGATGCAGAGAATCACCGAATTCTCTTCAATGTTTGTTTTATTTCTGTTGTTT 1628
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1629 GTACTTTATTTTTTAAATGATAATACAAAAGGGGGATTTTCCTGTTGCATTATTCTATGGTCTGCCATGGACTG 1702
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1703 CGCACTTTATTTGCTGGTGGGCAGGAGTAATCTAGACATTCATTCTTTGTAACAGGAAGATGGCGGATGAGTGG 1776
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1777 GCAGAAGGAGCTGAGGGATTCCTTTTTGCTTAGGCTTGGAATGGAGTCCTACAGGTTTTCTGTATGATGATTCT 1850
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1851 ATATCATATTTGTTCGATTTCATAATAACGTAAGATAATTTTCCCTGGGTATCTACGGTACAGTTGATTTCACG 1924
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1925 TTGTGTAAATATCTTCTTGGAGACCATTTGCCTTGGGCATTTCCCCCATCATTACTGAGTCTCTGCAGGTGTAC 1998
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1999 AAAAATCTACTGTAAATGGCAGTTTAATGTTAGAAATTACTGTTTTGCACCTCTTGTAAAAAAAATATTTAGCA 2072
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 2073 ATTGCATTTGTTGTTCTTTCTGTTTCATAATGCTTTACAGATGACTTGTAGAGGAAAACCCTAAATGTGGGCAA 2146
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 2147 TTCTCTTTGAAGTTGAGTAATCACCATGACTGTAAATGAGGGCCACCGTTTTGGACTCTGGCTCCAACTGAGTC 2220
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 2221 ACAGGCCAGTAGCATTTTATGTATCTGATGCCATCTTGCTGTTTTGGTACTACAAATACTGTCTTTTAAATATG 2294
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 2295 TTGATGCCCATCTCACTTAAATAATGACATGTCATGATCCTTCGGAATCTTCATTTAAGTGTTAAAGCTGGGAT 2368
Query 1432 ------------------- 1431
Sbjct 2369 CACAATGAAGCAAAAAATA 2387
