Construct: ORF ccsbBroadEn_00520

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012678.1_s300c1, BRDN0000398346
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ETV1 (2115)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2115 ETV1 ETS variant transcription f... NM_001370555.1 100% 100%
2 human 2115 ETV1 ETS variant transcription f... NM_004956.5 100% 100%
3 human 2115 ETV1 ETS variant transcription f... XM_005249635.5 100% 100%
4 human 2115 ETV1 ETS variant transcription f... XM_011515168.3 100% 100%
5 human 2115 ETV1 ETS variant transcription f... XM_011515170.3 97.6% 96.8% (many diffs)
6 human 2115 ETV1 ETS variant transcription f... NM_001370556.1 96.6% 96.6% 127_128ins48
7 human 2115 ETV1 ETS variant transcription f... NM_001163148.1 96.2% 96% 181_182ins54
8 human 2115 ETV1 ETS variant transcription f... NM_001163149.1 96.2% 96% 181_182ins54
9 human 2115 ETV1 ETS variant transcription f... XM_024446677.1 96.2% 96% 181_182ins54
10 human 2115 ETV1 ETS variant transcription f... XM_024446678.1 96.2% 96% 181_182ins54
11 human 2115 ETV1 ETS variant transcription f... XM_024446679.1 96.2% 96% 181_182ins54
12 human 2115 ETV1 ETS variant transcription f... NM_001163147.1 95.1% 95.1% 800_801ins69
13 human 2115 ETV1 ETS variant transcription f... XM_011515167.3 95.1% 94.1% (many diffs)
14 human 2115 ETV1 ETS variant transcription f... XM_024446676.1 91.5% 90.3% (many diffs)
15 human 2115 ETV1 ETS variant transcription f... NM_001163150.1 88.1% 87.3% (many diffs)
16 human 2115 ETV1 ETS variant transcription f... NM_001163151.1 86.6% 85.3% (many diffs)
17 human 2115 ETV1 ETS variant transcription f... NM_001163152.1 75.1% 74.3% (many diffs)
18 human 2115 ETV1 ETS variant transcription f... NR_120445.1 21.7% 1_434del;1374_1437del;1930_6583del
19 mouse 14009 Etv1 ets variant 1 NM_007960.5 93.7% 97.9% (many diffs)
20 mouse 14009 Etv1 ets variant 1 XM_006514965.2 93.7% 97.9% (many diffs)
21 mouse 14009 Etv1 ets variant 1 NM_001347379.1 90% 93.9% (many diffs)
22 mouse 14009 Etv1 ets variant 1 XM_006514964.3 88.5% 91.7% (many diffs)
23 mouse 14009 Etv1 ets variant 1 XM_006514966.3 84.9% 87.9% (many diffs)
24 mouse 14009 Etv1 ets variant 1 XM_006514970.3 82.1% 85.9% (many diffs)
25 mouse 14009 Etv1 ets variant 1 NM_001163154.1 82.1% 85.7% (many diffs)
26 mouse 14009 Etv1 ets variant 1 XM_006514968.3 82.1% 85.7% (many diffs)
27 mouse 14009 Etv1 ets variant 1 XM_006514971.3 80.9% 83.6% (many diffs)
28 mouse 14009 Etv1 ets variant 1 XM_006514969.3 80.8% 79.7% (many diffs)
29 mouse 14009 Etv1 ets variant 1 XM_006514972.3 67.3% 71.2% (many diffs)
30 mouse 432800 Gm5454 predicted gene 5454 XR_873890.1 56% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1500
ORF length:
1431
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGATGGATTT TATGACCAGC AAGTGCCTTA CATGGTCACC AATAGTCAGC
121GTGGGAGAAA TTGTAACGAG AAACCAACAA ATGTCAGGAA AAGAAAATTC ATTAACAGAG
181ATCTGGCTCA TGATTCAGAA GAACTCTTTC AAGATCTAAG TCAATTACAG GAAACATGGC
241TTGCAGAAGC TCAGGTACCT GACAATGATG AGCAGTTTGT ACCAGACTAT CAGGCTGAAA
301GTTTGGCTTT TCATGGCCTG CCACTGAAAA TCAAGAAAGA ACCCCACAGT CCATGTTCAG
361AAATCAGCTC TGCCTGCAGT CAAGAACAGC CCTTTAAATT CAGCTATGGA GAAAAGTGCC
421TGTACAATGT CAGTGCCTAT GATCAGAAGC CACAAGTGGG AATGAGGCCC TCCAACCCCC
481CCACACCATC CAGCACGCCA GTGTCCCCAC TGCATCATGC ATCTCCAAAC TCAACTCATA
541CACCGAAACC TGACCGGGCC TTCCCAGCTC ACCTCCCTCC ATCGCAGTCC ATACCAGATA
601GCAGCTACCC CATGGACCAC AGATTTCGCC GCCAGCTTTC TGAACCCTGT AACTCCTTTC
661CTCCTTTGCC GACGATGCCA AGGGAAGGAC GTCCTATGTA CCAACGCCAG ATGTCTGAGC
721CAAACATCCC CTTCCCACCA CAAGGCTTTA AGCAGGAGTA CCACGACCCA GTGTATGAAC
781ACAACACCAT GGTTGGCAGT GCGGCCAGCC AAAGCTTTCC CCCTCCTCTG ATGATTAAAC
841AGGAACCCAG AGATTTTGCA TATGACTCAG AAGTGCCTAG CTGCCACTCC ATTTATATGA
901GGCAAGAAGG CTTCCTGGCT CATCCCAGCA GAACAGAAGG CTGTATGTTT GAAAAGGGCC
961CCAGGCAGTT TTATGATGAC ACCTGTGTTG TCCCAGAAAA ATTCGATGGA GACATCAAAC
1021AAGAGCCAGG AATGTATCGG GAAGGACCCA CATACCAACG GCGAGGATCA CTTCAGCTCT
1081GGCAGTTTTT GGTAGCTCTT CTGGATGACC CTTCAAATTC TCATTTTATT GCCTGGACTG
1141GTCGAGGCAT GGAATTTAAA CTGATTGAGC CTGAAGAGGT GGCCCGACGT TGGGGCATTC
1201AGAAAAACAG GCCAGCTATG AACTATGATA AACTTAGCCG TTCACTCCGC TATTACTATG
1261AGAAAGGAAT TATGCAAAAG GTGGCTGGAG AGAGATATGT CTACAAGTTT GTGTGTGATC
1321CAGAAGCCCT TTTCTCCATG GCCTTTCCAG ATAATCAGCG TCCACTGCTG AAGACAGACA
1381TGGAACGTCA CATCAACGAG GAGGACACAG TGCCTCTTTC TCACTTTGAT GAGAGCATGG
1441CCTACATGCC GGAAGGGGGC TGCTGCAACC CCCACCCCTA CAACGAAGGC TACGTGTATT
1501TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1561acgaac

Download FASTA (ORF) (Full)

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