Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00566
Subject:
NR_135491.2
Aligned Length:
5574
Identities:
385
Gaps:
5150

Alignment

Query    1  -----------------------------------------ATGTCGTTCAGA---TTTGGCCAACATCT--CA  28
                                                     ||.||.|.|| |   ||||     |||||  ||
Sbjct    1  ACTCCTCCTCTTTCCTGGCAAGGTCACAAGAACAGTCATCTATTTCATCCA-AGTGTTTG-----CATCTAACA  68

Query   29  TCAA-----GCCCTCTGTAGTG---TTTCTCA--AAACAGAACTGTCCTTCGCTCTTGTGAATAGGAAACCTGT  92
             |||     ||..||.||..||   |||.|||  ||||| |||||     |.|.||||..|.|.|.||...|||
Sbjct   69  -CAATCACTGCATTCAGTTTTGAGATTTGTCATCAAACA-AACTG-----CACCCTTGCCATTTGTAACTTTGT  135

Query   93  GGTAC--CAGGA------CATGTCCTTGTGTGCCCG--CTGCGGCC----AGTGGAGC--------GCTTCCAT  144
            ||.||  |||||      .||.||.|..|||.||.|  ||  |.||    |.||||||        .||.|.|.
Sbjct  136  GGCACCACAGGATATTCTAATCTCATCTTGTTCCTGTCCT--GTCCCATTAATGGAGCCAACCACTTCTCCAAG  207

Query  145  GA--CCTGCGTCCT-------------------GATGAAGTGG----------CC--GATTTG--TTTCAGACG  183
            ||  .|||..||||                   || ||| |||          ||  |||.||  ..|||||||
Sbjct  208  GAGGTCTGGTTCCTTTTTTATTTTTATTTTTTGGA-GAA-TGGTATTTAGAAACCAAGATCTGGACATCAGACG  279

Query  184  ACCCAGAGAGTCGGGACAGTGGTGGAAAAACATTTCCATGGGACCTCTCTCACCTTTTCCATGCAGGATGGCCC  257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  280  ACCCAGAGAGTCGGGACAGTGGTGGAAAAACATTTCCATGGGACCTCTCTCACCTTTTCCATGCAGGATGGCCC  353

Query  258  CGAAGCCGGACAGACTGTGAAGCACGTTCACGTCCATGTTCTTCCCAGGAAGGCTGGAGACTTTCACAGGAATG  331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  CGAAGCCGGACAGACTGTGAAGCACGTTCACGTCCATGTTCTTCCCAGGAAGGCTGGAGACTTTCACAGGAATG  427

Query  332  ACAGCATCTATGAG------------------------------------------------------------  345
            ||||||||||||||                                                            
Sbjct  428  ACAGCATCTATGAGGAGGAGCTGGGATGCTCAGGTGAAATGTGGCCTCAGGCTCACCTGGGAATGAGCGAGTGA  501

Query  346  --------GAGCTCCAGAAACATGACAAGGAGGACTTTCCTGCCTCTTGGAGATCAGAGGAGGAAATGGCAGCA  411
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  502  AGTTAGGAGAGCTCCAGAAACATGACAAGGAGGACTTTCCTGCCTCTTGGAGATCAGAGGAGGAAATGGCAGCA  575

Query  412  GAAGCCGCAGCTCTGCGGGTCTACTTTCAG--------------------------------------------  441
            ||||||||||||||||||||||||||||||                                            
Sbjct  576  GAAGCCGCAGCTCTGCGGGTCTACTTTCAGTGACACAGGTAAAGACTGCATTTCGTCATTACCCAGACCCTCCC  649

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct  650  GTGGGCCTCAGGAAAGAGGCTGCACTCTCAGAATGGGGATGCACAAAAACACCTTCACCAGCATCCTTGGGTGG  723

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct  724  TGGCTGCAAAGGACAAAGAGCTGGAGGGGAGAAAACCCTGGCCCTTGAGTACTGTATTCCCAGCCTCCCAGTCT  797

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct  798  CTTCCAACTCTCCTGCCTCTTCACTCTCTTCTTCCAAGCCAGTGCCCCCAGCCCACCACCACCTTTCTCCAGTC  871

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct  872  TTTCCTGCGGTGGTGCTCCTCCAGAATCCAATGTTCACAAAGCAGACCTTCTGTCATGCACAACTTCTTGTTTA  945

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct  946  AAAGGTCAACCCCAACTTAACTTAAAGGTGTGACATGGCCCTTAGGCTCAAGTCTGTCTGCAAAGCCCTGTAAA  1019

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1020  CCAGCTTTCTCTGCCTCCCTAACACGCCCCCGGGCAAACTCCTCTGCTTTCACTGAGTGGACTCTTCTCTTCAG  1093

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1094  TTGCTATTTGGTAAATTGCCCTTCATGTTTCCCTTTATGTTCGGCTCCTAGGAAGCTCAGGCCACAGGGAAAAG  1167

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1168  TCAAGGCTTGATAGAATTAATCTTTGTCTTAATGATGACTAACTGTTGAGAGATCATAGGTTTAAGACTCTGGT  1241

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1242  AGAAAGATAGCTATAGCCAATTTCCTTGTCAAAATGCTTCTACTCCAAATTTTTATGCAGTGTCTAACGAGCTC  1315

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1316  ATGCCTAGATCTATCTGGCAATCTATATTATCCCTCCTAGTCTCAGTTCACATAGTAGACTGCTGGAATGACTG  1389

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1390  AGGGTGATGTTTGGCCTGTAAACAAAAAGTGTTAAAGAAGGCCAGGTACAGTGGCTCATGCCTATAATCCCAAC  1463

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1464  TACTTGGGAAGCTGAGGCAGGAGAACTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCATGCCAC  1537

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1538  TGCATTCCAGCCTGGGTGACAGAGCAAGACTCAGTTTCAAAAAAACAGGAGAGAGAGAGAGAGAAATGTATCTA  1611

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1612  TCTCTCTGAAATTTGTTTATAAATATAGGGTTACCATGCAATACTGGCATATATCTAGACTAAAAAAATTACTT  1685

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1686  GTTTATCTGAAATTCAAATTTAACTGGTATCTTGTATTTTTTTCTGGCAAACCTGTTAATAAACTCCCATGGAC  1759

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1760  CCCAGTTACAGATCCTCTCCTATAAATAGTTTCTTTTTTGTTTTTAGAATTAGATAATTCCAAATTAAAATTAG  1833

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1834  GCAATTCTTCATCTGACCTGTGAATAAATATGTTCATGTTATAAGTTGCAGAAGTAGATCAGACACAAATAAAA  1907

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1908  AACAAAATTAGTGAATAAATGCTGTTAGCAATTGATTGGAAAAAATTGTATCAACCACTTAGTGATCATGATTT  1981

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 1982  TTAGCTAGAAAACACATTCATTGTATTCTGATTTCACCTTGAAATGTAAGTAAGTCTTTACTGGATAGCTTTAA  2055

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2056  ATATATGTGCACTTGGCCTTTCTCTCCCCAGCCCTCTTTTTAGAGTATTCTAAATAGTTAAAGACCCAGACTAC  2129

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2130  CTTGCCCCCTATTGTTGTTCAAATATGGTGTTGTACTCAGATCCTTGCATTCTAGAAAGCTTATTTCATTCTCC  2203

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2204  CATGTCATAAGTTTGTCAGCTCTGCACTCAGTTGCCTGGGGGGATATGGCAAGTGCTATAACAGAGGCTGTCTT  2277

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2278  TCATATTTTATTTTGAACCTTTTCCACTGTTCACCATCTCTCTCTCGTTTTTTAAGGATCAAGCTAGTTTAGTT  2351

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2352  TACCTAAGAACATAGGCCTATGGGCATGACTACAAACCTCTTTCTGTTCCTCTTATGAAGGCCAGTATGTCATT  2425

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2426  TTAGAGTGCCCTGTTCAAATTTAAATGGGGTGACAATACCTCAGACTTGACTGCCTAGGTTGAATTTTTTCTCC  2499

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2500  TGGGTTTTCTATGCAGTGGGTATTTTCAGGTAGAGGCTAGAAAGCTTTAGCCTTTTTCCCAAGGCTTGCTGAAT  2573

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2574  TGTAGGAGTTTTGTCTTAGAATGCTTTTTCTAGACACTTTAAGAACTTTAAGAAGATTCAAACTTATTACCCAA  2647

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2648  ATTTCCTGTAGGCTTTGTTTTGTCAGTTTTTGCTTCTGTCTTGCCTGGAGGCCTGACACCTCCTGTCTTCCAGG  2721

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2722  TAAATTGACTTCCCTTGTACATCTTACCAGAAAGATATTTACCCTAACTTGTTACACAAACTATTGCCACAGTA  2795

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2796  CCTGTGGATTTTTAAGTTAACTAACATGTGTATTTCTCTTTAAAGGTTTTGTGCACAGACCAAACAAATCACCC  2869

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2870  TCAGTCTTCCCAGCAGTCAGATGTGGTAACTAAGACTAGGACGGATAATATAGGTTGTGAGGTGGCAAACAACT  2943

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 2944  TAGGGTCCTAAGATTTTGCCAAGACTGTCATCATTACCTGGAGTATAATGGGACTAACTATACCTCCCTTTAAG  3017

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3018  GACAATGGAAACATTCTATTGAAACCATCCTCACAGGGTTAACAAGAATTAGATGCTGGGTTCTGGACAGAAAT  3091

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3092  ATAGTTGTAATTAAGCATTAATCAGGCTGCACTTTGGCCCACTTCTTCGTAACCAAAAGTCCCAGAGCACCAGA  3165

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3166  TGCTAACCATTTGCCTCCTCATTGTTCCTACAGAGAAGATTTCTGATGTTAGAATCATAAGGCCTTTGTTTGTT  3239

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3240  TAAAAATGGCTTAAGATGTTTTTCAGATCCTGAATTCCAGCAAAAGAGCTATTGCCAACCAGTTTGAAGACCGC  3313

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3314  CCCCCGCCTCTCCCCAAGAGGAACTGAATCAGCATGAAAATGCAGTTTCTTCATCTCACCATCCTGTATTCTTC  3387

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3388  AACCAGTGATCCCCCACCTCGGTCACTCCAACTCCCTTAAAATACCTAGACCTAAACGGCTCAGACAGGCAGAT  3461

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3462  TTGAGGTTTCCCCCTGTCTCCTTATTCGGCAGCCTTATGATTAAACTTCCTTCTCTGCTGCAACCCTGTGTCTC  3535

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3536  GGTGTATTGACTTGCCATGAATTAGGCAACAAACCTATTACAGTTACAGTTACTTTTTTAAAGGAAATTCAATC  3609

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3610  GTTGGATTGGTCCACCTGCTTATTTCTTCCCTTTTCAAAAAAAATGTCTACATATTGAATTTTTATACATTAAG  3683

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3684  TGGTTCATGAAACCCCTGAAATGTGTTAGTAAATAGGGCAATTATGAAATATTTGGACATAGCTAGACTTTAAA  3757

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3758  AATTGTTAATCTGAAGGTCAGATAGACTTGGCCTTCTCCAGCTTTCGTGATTATTCCCTCAGCAGCAAGCTAGT  3831

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3832  CTTAGGCAGAGCAAGTTTAAAGACATTCATGGTGCTCACTCTGCAAAACTGCACAATTCTCAACATGCACAGAG  3905

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3906  GCAGACATGATAGGGCTCAGCCCTGGAATTGATAACACTAGCCAACACACTTGCTAAGAATTTATAAGATGTAG  3979

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 3980  ACCCTGTTATTATCCTGTCTTGCAAGTGATGAGAAAACTAAGGCTTAAGGATGTTAAGTATTATTAGTTCAAGG  4053

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4054  CCAACGGTAAGTGGCAAAGCTCAGATTTGAATCCAGGCAGTCCCACCCTAAAGGCCATTCTCTTAGTCTGTGTA  4127

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4128  CTGCCCTCCTTGCTAAAAGAGCTCACCTCTCTAGCCACTTCCTTCTCCCTGTCCCATCTCCCCTTGTACCCTCC  4201

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4202  AAATAGTCTTCTTAGCCTCTTCACCTTATCTACTGGCCTATTTCTGCCTTGAGGACCTCCCACCTCCTCGCCTG  4275

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4276  CTGGACTTCTTCCTTACCTGCCTTGTTAATACAACCCTGCCCAGCACCTGCCTCCCTGGTCACACTACAGCCAG  4349

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4350  GTAGCAGAAACCAAAATGGGCCTGGATTTCCCCAACCAACTTGGTTCTACTTGCAAGATTCTCAGATCATGCTG  4423

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4424  AATCCTGCCTAGGCTACCCTCCCACTTTCTTTTCTTTACCATCTGACCACATGCCTAAATAAACATCACTTGGG  4497

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4498  CGAATACAGTGTTCCCCAAATTGCATTCATTCCCATTTTGTCATGATTTTTCTTATCTTTGTGGACCACCTAGA  4571

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4572  GCATTATTTACTTGATTCACTTTTTGAATTTTAGTATATATATCTTAAACTTTATATTTCAGCCTCAAAGAAAA  4645

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4646  ACAAGTACTACCTGTAATTAGAAGTTAAGCATAAAAATAAACATAAGAGAAAAACAATGCTGATGATTTCCAGC  4719

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4720  TCTGCATAGTTGCTTGCCTTAGCAACTAGGAGTGAGATTCAGTCTCTGTGTTAAAAAGTGAGGCTAGCCACCAT  4793

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4794  TAGAGGGGCATTTAATTCTAGCACCAAACCGAAACTCTCCATTTGGCATATTCAGAAGGATTAAAGAGAATAAC  4867

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4868  CTACTGAGAGATTCAATGTAGATCACTTAAGATTATCTTAAACAGGAATATGACTGACTCCCAACTTTGGAGAA  4941

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 4942  ACAGCAGTGGAGGCCAGATCTTAAACCCAGAGCAAGCTGGCTTTAGACTTGCTTCAACCCTAAACCAGTACTCC  5015

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 5016  TTTCCACCCACCCACCTCCCCCCAACCCCTGCAGGCATATCAAGAAGACAAGGTGCATGGGGGAAAACCAAAGA  5089

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 5090  GTCAGCTTCCCTAGGGCTGATGGGTCAAATCTCAGTGCTTGCCTCTGACATTTTGCTTGCCGACAGTCTGTCTT  5163

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 5164  GAAAACCAACAGGTTGCAAAGAAGAATGTGAACACCTATATCCAGAGATGCCCTATATAAGAATAAAGACTATA  5237

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 5238  AGACCAAAAAGATGTTCTTGACTTAATGTTTGGGGTGGACATACCTAGTTATACGATTTGGCTGTTTCCCCACC  5311

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 5312  CACATCTCATCTTGAATTGTAGCTCCCATAATCCCCACATGTCATGGGAGGGACCCAGTGGGAGGTAACTGAAT  5385

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 5386  CAAGGGGGAGGGTCTTTCCCATGCTGTTCTCATGATTGATAGTGATGGTTTTATAAAGGACATTTCCCCTGAAT  5459

Query  442  --------------------------------------------------------------------------  441
                                                                                      
Sbjct 5460  ACGCTGTCTTGCCTGCTGCCATGTAAGATGTGGCTTTGCTCCTCTTTTGCCTTCCTCCATGATTGCGAGTCCAT  5533

Query  442  ------------------------  441
                                    
Sbjct 5534  TAAACCTCATTCCTTTATAAATTA  5557

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