Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00683
Subject:
NM_001330539.2
Aligned Length:
1581
Identities:
1449
Gaps:
123

Alignment

Query    1  ATGAGGGATAGCTCGGCCCCCAGCTCGGCCTCCTCGTCAGTGACAGATCTGTACTGCACCCCTCACAGCAGTAG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GTCAGACCTCGTCCTGCCCGGCACGGCCGGGGACTTCAGCCTGAGCGCCAGCCTGTCGGCCTGTACGCTGCTCT  148
                         .|||    |.|.|||||    ||||                   ||..|.||...|||   
Sbjct    1  -------------ATGC----CGCTGCCGG----TTCA-------------------GGTGTTTAACTTGC---  31

Query  149  ACGAGGGGGCCGTGGAGCCCATGCAGATCGACGTGGACCCCCAGGAAGACCCGCAGAATGCACCTGACGTCAAC  222
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   32  ---AGGGGGCCGTGGAGCCCATGCAGATCGACGTGGACCCCCAGGAAGACCCGCAGAATGCACCTGACGTCAAC  102

Query  223  TACGTGGTGGAGAACCCCAGCCTGGATCTGGAACAGTACGCGGCCAGCTACAGCGGCCTGATGCGCATCGAACG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  103  TACGTGGTGGAGAACCCCAGCCTGGATCTGGAACAGTACGCGGCCAGCTACAGCGGCCTGATGCGCATCGAACG  176

Query  297  GCTGCAGTTCATTGCTGATCACTGCCCCACGCTGCGGGTGGAGGCCCTGAAGATGGCCCTCTCCTTCGTGCAGA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  177  GCTGCAGTTCATTGCTGATCACTGCCCCACGCTGCGGGTGGAGGCCCTGAAGATGGCCCTCTCCTTCGTGCAGA  250

Query  371  GAACCTTTAACGTGGACATGTACGAGGAGATCCACCGCAAGCTCTCAGAGGCCACCAGGGAGCTGCAGAACGCA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  251  GAACCTTTAACGTGGACATGTACGAGGAGATCCACCGCAAGCTCTCAGAGGCCACCAGGGAGCTGCAGAACGCA  324

Query  445  CCCGACGCCATCCCTGAGAGCGGCGTGGAGCCCCCAGCCCTGGACACGGCCTGGGTGGAGGCCACGCGGAAGAA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  325  CCCGACGCCATCCCTGAGAGCGGCGTGGAGCCCCCAGCCCTGGACACGGCCTGGGTGGAGGCCACGCGGAAGAA  398

Query  519  GGCGCTGCTGAAGCTGGAGAAGCTGGACACAGACCTGAAGAACTACAAGGGCAACTCCATCAAAGAGAGCATCC  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  399  GGCGCTGCTGAAGCTGGAGAAGCTGGACACAGACCTGAAGAACTACAAGGGCAACTCCATCAAAGAGAGCATCC  472

Query  593  GGCGCGGCCACGACGACCTGGGCGACCACTACCTGGACTGTGGGGACCTCAGCAACGCCCTCAAGTGCTATTCC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  473  GGCGCGGCCACGACGACCTGGGCGACCACTACCTGGACTGTGGGGACCTCAGCAACGCCCTCAAGTGCTATTCC  546

Query  667  CGGGCCCGGGACTACTGCACCAGCGCCAAACACGTCATCAACATGTGCCTCAATGTCATCAAGGTCAGCGTCTA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  547  CGGGCCCGGGACTACTGCACCAGCGCCAAACACGTCATCAACATGTGCCTCAATGTCATCAAGGTCAGCGTCTA  620

Query  741  CTTGCAGAATTGGTCTCATGTGCTCAGCTACGTCAGCAAGGCTGAGTCCACCCCAGAGATTGCCGAGCAGCGAG  814
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct  621  CTTGCAGAATTGGTCTCATGTGCTCAGCTACGTCAGCAAGGCTGAGTCCACCCCAGAGATTGCCG---AGCGAG  691

Query  815  GAGAGCGTGACAGCCAGACCCAGGCCATCCTCACCAAGCTCAAGTGTGCCGCAGGCTTGGCAGAGCTGGCCGCC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  692  GAGAGCGTGACAGCCAGACCCAGGCCATCCTCACCAAGCTCAAGTGTGCCGCAGGCTTGGCAGAGCTGGCCGCC  765

Query  889  AGGAAGTACAAGCAGGCTGCCAAGTGCCTCCTGCTGGCTTCCTTTGATCACTGTGACTTCCCTGAGCTGCTGTC  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  766  AGGAAGTACAAGCAGGCTGCCAAGTGCCTCCTGCTGGCTTCCTTTGATCACTGTGACTTCCCTGAGCTGCTGTC  839

Query  963  CCCCAGCAACGTGGCCATCTACGGTGGCCTGTGCGCCTTGGCTACCTTTGACCGGCAGGAGCTGCAGCGCAATG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  840  CCCCAGCAACGTGGCCATCTACGGTGGCCTGTGCGCCTTGGCTACCTTTGACCGGCAGGAGCTGCAGCGCAATG  913

Query 1037  TCATCTCCAGCAGCTCCTTCAAGTTGTTCTTGGAGCTGGAGCCACAGGTCCGAGACATCATCTTCAAATTCTAC  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  914  TCATCTCCAGCAGCTCCTTCAAGTTGTTCTTGGAGCTGGAGCCACAGGTCCGAGACATCATCTTCAAATTCTAC  987

Query 1111  GAGTCCAAGTACGCCTCATGTCTCAAGATGCTGGACGAGATGAAGGACAACCTGCTCCTGGACATGTATCTGGC  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  988  GAGTCCAAGTACGCCTCATGTCTCAAGATGCTGGACGAGATGAAGGACAACCTGCTCCTGGACATGTATCTGGC  1061

Query 1185  CCCCCATGTCAGGACCCTGTACACCCAGATTCGCAACCGTGCCCTCATCCAGTATTTCAGCCCCTACGTGTCAG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062  CCCCCATGTCAGGACCCTGTACACCCAGATTCGCAACCGTGCCCTCATCCAGTATTTCAGCCCCTACGTGTCAG  1135

Query 1259  CCGACATGCATAGGATGGCGGCAGCCTTCAATACCACGGTGGCCGCCCTGGAGGACGAGCTGACGCAGCTAATC  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136  CCGACATGCATAGGATGGCGGCAGCCTTCAATACCACGGTGGCCGCCCTGGAGGACGAGCTGACGCAGCTAATC  1209

Query 1333  CTGGAGGGGCTGATCAGTGCCCGTGTGGACTCACACAGCAAGATCCTATACGCCCGGGACGTGGATCAGCGCAG  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210  CTGGAGGGGCTGATCAGTGCCCGTGTGGACTCACACAGCAAGATCCTATACGCCCGGGACGTGGATCAGCGCAG  1283

Query 1407  CACCACCTTTGAGAAGTCTCTGTTGATGGGCAAGGAGTTCCAGCGCCGCGCCAAGGCCATGATGCTGCGGGCAG  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284  CACCACCTTTGAGAAGTCTCTGTTGATGGGCAAGGAGTTCCAGCGCCGCGCCAAGGCCATGATGCTGCGGGCAG  1357

Query 1481  CTGTGCTCCGCAACCAGATCCATGTCAAGTCCCCGCCCAGAGAAGGGAGCCAGGGGGAGCTGACTCCAGCCAAC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358  CTGTGCTCCGCAACCAGATCCATGTCAAGTCCCCGCCCAGAGAAGGGAGCCAGGGGGAGCTGACTCCAGCCAAC  1431

Query 1555  AGCCAGTCCCGGATGAGCACCAACATG  1581
            |||||||||||||||||||||||||||
Sbjct 1432  AGCCAGTCCCGGATGAGCACCAACATG  1458

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