Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00739
- Subject:
- XR_001784073.1
- Aligned Length:
- 2786
- Identities:
- 1791
- Gaps:
- 746
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGGTGCGGGAGGGAGGTGGAGAGCCGCCTCGGGCTCTCAGGAGCGTGTGGCCGCCGCCTTCCGCTTGCCGCCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCCGCGATGTGCAGGCGCGGCGTGGGCTTGGGTCACCTGTGCGCAGCCGCCGCCCTGCCCTACTGGCTGTCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGGGTGCTCTACAGATCAGCTGTCGTCCACGCTGGTCTAGCCCCAAACTCTCATTTTCATTTTTTCCCCACCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCACCCTATCCCGACTGCCCCTGTCCTGTCTCCCGCCATGCACTTCCTCTCCCGCTCTCTCCCCTCCGGCCAAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCATGCCGCTCCCCGCCCCCAAGACTCCACTCTGGCTGTGTACTCTGTGTGCACTTTCTAACCTTGACCCAAGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGCATCCCGACATGGGTGGATGTGCAAGTGTCCATCTCACTCTCGGTCCAAAAGGGCTTTTCCGATTGGGGCT 444
Query 1 ------------------------------------ATGGACGGCTCCTTCGTCCAGCACAGTGTGAGGGTTCT 38
||||||||.||||||||.||||||||.|||||||||||
Sbjct 445 GAGCAGAGGGGTCATGTTTGCCTTCCCTTTCAGATTATGGACGGTTCCTTCGTGCAGCACAGCGTGAGGGTTCT 518
Query 39 GCAGGAGCTCAACAAGCAGCGGGAGAAGGGCCAGTACTGCGACGCCACTCTGGACGTGGGGGGCCTGGTGTTTA 112
||||||.||||||||||||||.||||||||||||||.|||||||||||.|||||||||||||||||||||||.|
Sbjct 519 GCAGGAACTCAACAAGCAGCGCGAGAAGGGCCAGTATTGCGACGCCACACTGGACGTGGGGGGCCTGGTGTTCA 592
Query 113 AGGCACACTGGAGTGTCCTTGCCTGCTGCAGTCACTTTTTCCAGAGCCTCTACGGGGATGGCTCAGGGGGCAGT 186
||||.||||||||||||||.||.||.|||||.||.||.||||||||..||||||||||||||.||||||||||.
Sbjct 593 AGGCGCACTGGAGTGTCCTGGCGTGTTGCAGCCATTTCTTCCAGAGAATCTACGGGGATGGCACAGGGGGCAGC 666
Query 187 GTCGTCCTCCCTGCTGGCTTCGCTGAGATCTTTGGCCTCTTGTTGGACTTTTTCTACACTGGTCACCTCGCTCT 260
||.||||||||.||.|||||.||||||||.|||||||||.||.|||||||||||||||||||.||||||||.||
Sbjct 667 GTTGTCCTCCCAGCGGGCTTTGCTGAGATTTTTGGCCTCCTGCTGGACTTTTTCTACACTGGCCACCTCGCCCT 740
Query 261 CACCTCAGGGAACCGGGATCAGGTGCTCCTGGCAGCCAGGGAGTTGCGAGTGCCAGAGGCCGTAGAGCTGTGCC 334
|||||||||||||.||||||||||.|||.|||||||||..||||||.|.|||||.|||||.||.|||||.||.|
Sbjct 741 CACCTCAGGGAACAGGGATCAGGTACTCTTGGCAGCCAAAGAGTTGAGGGTGCCTGAGGCTGTGGAGCTATGTC 814
Query 335 AGAGCTTCAAGCCCAAAACTTCAGTGGGACAGGCAGCAGGTGGCCAGAGTGGGCTGGGGCCCCCTGCCTCCCAG 408
||||||||.|||||.||||.||||||||||||||| ||||||||.|||||.|..||||||||||||
Sbjct 815 AGAGCTTCCAGCCCCAAACCTCAGTGGGACAGGCA---------CAGAGTGGACTGGGTCAACCTGCCTCCCAG 879
Query 409 AATGTGAACAGCCACGTCAAGGAGCCGGCAGGCTTGGAAGAAGAGGAAGTTTCGAGGACTCTGGGTCTAGTCCC 482
.|.|||||.||||||.|.|||||||||.|||.||||||.||.||||||||||..|||||||||.|.||.|.|.|
Sbjct 880 GACGTGAAAAGCCACCTGAAGGAGCCGACAGACTTGGATGAGGAGGAAGTTTTCAGGACTCTGAGCCTGGCCTC 953
Query 483 CAGGGATCAGGAGCCCAGAGGCAGTCATAGTCCTCAGAGGCCCCAGCTCCATTCCCCAGCTCAGAGTGAGGGCC 556
|..|||||||||||||||||.|| ||.||..|||||||||...|.|.||.||||||| ||.
Sbjct 954 CGTGGATCAGGAGCCCAGAGACA---------CTGAGCAGCCCCAGCTGGGTACACCTGCTCAGA------GCA 1012
Query 557 CC---TCCTCCCTCTGTGGGAAACTGAAGCAGGCCTTGAAGCCTTGTCCCCTTGAGGACAAGAAACCCGAGGAC 627
|| .|||.|||||||||||||||.|.||||||.||||||||||.||||...||||||||..|..|.||||||
Sbjct 1013 CCACGGCCTTCCTCTGTGGGAAACTCACGCAGGCTTTGAAGCCTTCTCCCTCAGAGGACAAAGAGTCTGAGGAC 1086
Query 628 TGCAAAGTGCCCCCAAGGCCCTTAGAGGCTGAAGGTGCCCAGCTGCAGGGCGGCAGTAATGAGTGGGAAGTGGT 701
|||||||.|||||||||||||||.|||||||.||||||||.|||||||||||..||.|||||||||||||||||
Sbjct 1087 TGCAAAGAGCCCCCAAGGCCCTTCGAGGCTGGAGGTGCCCCGCTGCAGGGCGAGAGCAATGAGTGGGAAGTGGT 1160
Query 702 GGTTCAAGTGGAGGATGATGGGGATGGCGATTACATGTCTGAGCCTGAGGCTGTGCTGACCAGGAGGAAGTCAA 775
|||.|||||||||||.||..||||.||.||||||.|.||||||||||||.|||||||.|||||.||||||||||
Sbjct 1161 GGTCCAAGTGGAGGACGACAGGGACGGTGATTACGTATCTGAGCCTGAGACTGTGCTAACCAGAAGGAAGTCAA 1234
Query 776 ATGTAATCCGAAAGCCCTGTGCAGCTGAGCCAGCCCTGAGCGCGGGCTCCCTAGCAGCTGAGCCTGCTGAGAAC 849
|.||.||..||||.|||||||||||.||||||||||||.|.|||||.||.||..||||.|||||..||||.|.|
Sbjct 1235 AAGTGATTAGAAAACCCTGTGCAGCCGAGCCAGCCCTGGGTGCGGGTTCTCTCACAGCCGAGCCCACTGACAGC 1308
Query 850 AGAAAAGGTACAGCGGTGCCGGTCGAATGCCCCACATGTCATAAAAAGTTCCTCAGCAAATATTATCTAAAAGT 923
|||||||||.||||.||.|||||||||||.|||||||||||.|||||||||||||||||||||||.||.|||||
Sbjct 1309 AGAAAAGGTGCAGCCGTTCCGGTCGAATGTCCCACATGTCACAAAAAGTTCCTCAGCAAATATTACCTGAAAGT 1382
Query 924 CCACAACAGGAAACATACTGGGGAGAAACCCTTTGAGTGTCCCAAATGTGGGAAGTGTTACTTTCGGAAGGAGA 997
|||||||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||.||.|||||||
Sbjct 1383 CCACAACAGGAAACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTCCGCAAGGAGA 1456
Query 998 ACCTCCTGGAGCATGAAGCCCGGAATTGCATGAACCGCTCGGAA------------------------------ 1041
|.|||.||||.|||||||||.|||||||||||||||||||.|||
Sbjct 1457 ATCTCTTGGAACATGAAGCCAGGAATTGCATGAACCGCTCAGAACAGCATCCCCTACCCCAGGCAGACACTTAC 1530
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1531 CAGCAGCGTTTGGAAGCCCCTGCAGAGGCTGCCGTCGCAGGCAGAGGCCCTCCCTGATGCTGGCCCTGCTTGCC 1604
Query 1042 -----------CAGGTCTTCACGTGCTCTGTGTGCCAGGAGACATTCCGCCGAAGGATGGAGCTGCGGGTGCAC 1104
|||||||||||.|||||.||.|||||||||||.|||||.||.||||||||||||||..|||||
Sbjct 1605 CCTCACACTGCCAGGTCTTCACATGCTCCGTATGCCAGGAGACCTTCCGACGGAGGATGGAGCTGCGCTTGCAC 1678
Query 1105 ATGGTGTCTCACACAGGGGAGATGCCCTACAAGTGTTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGACTT 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1679 ATGGTGTCTCACACAGGGGAGATGCCCTACAAGTGTTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAAGACTT 1752
Query 1179 GCAGAGCCACATGATCAAACTTCATGGAGCCCCCAAGCCCCATGCATGCCCCACCTGTGCCAAGTGCTTCCTGT 1252
||||||||||||||||||.||.||.||||||||.||.|||||.|||||||||||.|||||||||||||||||||
Sbjct 1753 GCAGAGCCACATGATCAAGCTGCACGGAGCCCCTAAACCCCACGCATGCCCCACTTGTGCCAAGTGCTTCCTGT 1826
Query 1253 CTCGGACAGAGCTGCAGCTGCATGAAGCTTTCAAGCACCGTGGTGAGAAGCTGTTTGTGTGTGAGGAGTGTGGG 1326
||.||||.|||||.||||||||.||.|||||.|||||.|||||.||.|||||.||||||||||||||.||.|||
Sbjct 1827 CTAGGACGGAGCTACAGCTGCACGAGGCTTTTAAGCATCGTGGAGAAAAGCTCTTTGTGTGTGAGGAATGCGGG 1900
Query 1327 CACCGGGCCTCGAGCCGGAATGGCCTGCAGATGCACATCAAGGCCAAGCACAGGAATGAGAGGCCACACGTATG 1400
|||||||||||||||||.||.||.|||||||||||||||||||||||||||||||||||.|||||..|.||.||
Sbjct 1901 CACCGGGCCTCGAGCCGCAACGGACTGCAGATGCACATCAAGGCCAAGCACAGGAATGAAAGGCCTTATGTCTG 1974
Query 1401 TGAGTTCTGCAGCCACGCCTTCACCCAAAAGGCCAATCTCAACATGCACCTGCGCACACACACGGGTGAGAAGC 1474
|||||||||||||||.|||||||||||.||||||||.||||||||||||||||||||||||||.||.|||||||
Sbjct 1975 TGAGTTCTGCAGCCATGCCTTCACCCAGAAGGCCAACCTCAACATGCACCTGCGCACACACACCGGCGAGAAGC 2048
Query 1475 CCTTCCAGTGCCACCTCTGTGGCAAGACCTTCCGAACCCAAG-----------CCAGCC--------------- 1522
|.||||||||||||||||||||.|||||||||||.||||||| ||||||
Sbjct 2049 CTTTCCAGTGCCACCTCTGTGGGAAGACCTTCCGCACCCAAGGTGAGGCAGGCCCAGCCCCTCCTTGCCCCAGG 2122
Query 1523 --------------------------------------------TGGACAAGCACAACCGCACCCACACCGGGG 1552
|||||||||||||||||||||||||.||.|
Sbjct 2123 GCTGAGACAGCCACTGAGTTCCACCTTGTCCCCCATAGCCAGTTTGGACAAGCACAACCGCACCCACACGGGCG 2196
Query 1553 AAAGGCCCTTCAGTTGCGAGTTCTGTGAACAGCGCTTCACTGAGAAGGGGCCCCTCCTGAGGCACGTGGCCAGC 1626
|.|||||.|||||.||.||.||||||||.||||||||||||||||||||.|||||.||||||||.|||||||||
Sbjct 2197 AGAGGCCTTTCAGCTGTGAATTCTGTGAGCAGCGCTTCACTGAGAAGGGCCCCCTTCTGAGGCATGTGGCCAGC 2270
Query 1627 CGCCATCAGGAGGGCCGGCCCCACTTCTGCCAGATATGCGGCAAGACCTTCAAAGCCGTGGAGCAACTGCGTGT 1700
||||||||.||||||.|||||||||||||||||||.||.|||||||||||||||||.|||||.||..|.||.||
Sbjct 2271 CGCCATCAAGAGGGCAGGCCCCACTTCTGCCAGATCTGTGGCAAGACCTTCAAAGCTGTGGAACAGTTACGAGT 2344
Query 1701 GCACGTCAGACGGCACAAGGGGGTGAGGAAGTTTGAGTGCACCGAGTGTGGCTACAAGTTTACCCGACAGGCCC 1774
|||||||||.||.|||||.||.|||||.|||||.||||||||||||||||||||||||||.||.||.|||||.|
Sbjct 2345 GCACGTCAGGCGACACAAAGGTGTGAGAAAGTTCGAGTGCACCGAGTGTGGCTACAAGTTCACGCGGCAGGCTC 2418
Query 1775 ACCTGCGGAGGCACATGGAGATCCACGACCGGGTAGAGAACTACAACCCGCGGCAGCGCAAGCTCCGCAACCTG 1848
|||||||||||||||||||||||||||||.|.||.|||||||||||.||.|||||||||||||||||.|||||.
Sbjct 2419 ACCTGCGGAGGCACATGGAGATCCACGACAGAGTGGAGAACTACAATCCCCGGCAGCGCAAGCTCCGGAACCTC 2492
Query 1849 ATCATCGAGGACGAGAAGATGGTGGTGGTGGCGCTGCAGCCGCCTGCAGAGCTGGAGGTGGGCTCGGCGGAGGT 1922
|||||.|||||.||||||||||||||.|||||.||.|||||.||||||||.||||||||||||||.||.|||||
Sbjct 2493 ATCATTGAGGATGAGAAGATGGTGGTCGTGGCTCTCCAGCCCCCTGCAGACCTGGAGGTGGGCTCTGCTGAGGT 2566
Query 1923 CATTGTGGAGTCCCTGGCCCAGGGCGGCCTGGCCTCCCAGCTCCCCGGCCAGAGACTGTGTGCAGAGGAGAGCT 1996
||||||||||||||||.|||||||.|||||.||||||||.|||||..||||||||||||||.||||||||||||
Sbjct 2567 CATTGTGGAGTCCCTGACCCAGGGTGGCCTTGCCTCCCAACTCCCTAGCCAGAGACTGTGTTCAGAGGAGAGCT 2640
Query 1997 TCACCGGCCCAGGTGTCCTGGAGCCCTCCCTCATCATCACAGCTGCTGTCCCCGAGGACTGTGACACA------ 2064
|..|..||||.||.||||||||||||||.|||||||||||.||||||||.|||||||||||||||||.
Sbjct 2641 TTGCTAGCCCTGGCGTCCTGGAGCCCTCTCTCATCATCACCGCTGCTGTTCCCGAGGACTGTGACACGTAGACC 2714
Query 2065 ------------------------------------------------ 2064
Sbjct 2715 CCTGCCCGGATGGCCCCACTGACCAATAAACATGTGACTTAGCACTTG 2762
