Construct: ORF ccsbBroadEn_00739
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008971.1_s300c1, BRDN0000395423
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZBTB48 (3104)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | NM_001278647.2 | 100% | 100% | |
| 2 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | NM_001278648.2 | 100% | 100% | |
| 3 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | NM_005341.4 | 100% | 100% | |
| 4 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | XR_946621.3 | 92.5% | 1_91del;1605_1606insAGCC;2152_2222del | |
| 5 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | XR_001737136.1 | 91.1% | 1_125del;1639_1640insAGCC;2186_2256del | |
| 6 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | XR_001737135.2 | 90.3% | 1_146del;1660_1661insAGCC;2207_2277del | |
| 7 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | XM_017001110.2 | 54.5% | 50.4% | (many diffs) |
| 8 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | XR_001737137.2 | 54.2% | 1_91del;1133_1232del;1415_1416ins840 | |
| 9 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | XM_017001111.2 | 52.9% | 51.5% | (many diffs) |
| 10 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | XM_017001112.2 | 47.3% | 47.3% | 0_1ins1086 |
| 11 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | XM_017001113.2 | 47.3% | 47.3% | 0_1ins1086 |
| 12 | human | 3104 | ZBTB48 | zinc finger and BTB domain ... | XM_017001114.2 | 47.3% | 47.3% | 0_1ins1086 |
| 13 | mouse | 100090 | Zbtb48 | zinc finger and BTB domain ... | NM_133879.2 | 86.5% | 90.8% | (many diffs) |
| 14 | mouse | 100090 | Zbtb48 | zinc finger and BTB domain ... | XM_017319884.1 | 82.9% | 87% | (many diffs) |
| 15 | mouse | 100090 | Zbtb48 | zinc finger and BTB domain ... | XM_006538448.1 | 80.1% | 74.1% | (many diffs) |
| 16 | mouse | 100090 | Zbtb48 | zinc finger and BTB domain ... | XM_006538449.1 | 80.1% | 74.1% | (many diffs) |
| 17 | mouse | 100090 | Zbtb48 | zinc finger and BTB domain ... | XM_017319883.1 | 77% | 71.2% | (many diffs) |
| 18 | mouse | 100090 | Zbtb48 | zinc finger and BTB domain ... | XR_001784073.1 | 64.2% | (many diffs) | |
| 19 | mouse | 100090 | Zbtb48 | zinc finger and BTB domain ... | XM_006538451.2 | 44.9% | 49.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2130
- ORF length:
- 2064
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CGGCTCCTTC GTCCAGCACA GTGTGAGGGT TCTGCAGGAG CTCAACAAGC 121 AGCGGGAGAA GGGCCAGTAC TGCGACGCCA CTCTGGACGT GGGGGGCCTG GTGTTTAAGG 181 CACACTGGAG TGTCCTTGCC TGCTGCAGTC ACTTTTTCCA GAGCCTCTAC GGGGATGGCT 241 CAGGGGGCAG TGTCGTCCTC CCTGCTGGCT TCGCTGAGAT CTTTGGCCTC TTGTTGGACT 301 TTTTCTACAC TGGTCACCTC GCTCTCACCT CAGGGAACCG GGATCAGGTG CTCCTGGCAG 361 CCAGGGAGTT GCGAGTGCCA GAGGCCGTAG AGCTGTGCCA GAGCTTCAAG CCCAAAACTT 421 CAGTGGGACA GGCAGCAGGT GGCCAGAGTG GGCTGGGGCC CCCTGCCTCC CAGAATGTGA 481 ACAGCCACGT CAAGGAGCCG GCAGGCTTGG AAGAAGAGGA AGTTTCGAGG ACTCTGGGTC 541 TAGTCCCCAG GGATCAGGAG CCCAGAGGCA GTCATAGTCC TCAGAGGCCC CAGCTCCATT 601 CCCCAGCTCA GAGTGAGGGC CCCTCCTCCC TCTGTGGGAA ACTGAAGCAG GCCTTGAAGC 661 CTTGTCCCCT TGAGGACAAG AAACCCGAGG ACTGCAAAGT GCCCCCAAGG CCCTTAGAGG 721 CTGAAGGTGC CCAGCTGCAG GGCGGCAGTA ATGAGTGGGA AGTGGTGGTT CAAGTGGAGG 781 ATGATGGGGA TGGCGATTAC ATGTCTGAGC CTGAGGCTGT GCTGACCAGG AGGAAGTCAA 841 ATGTAATCCG AAAGCCCTGT GCAGCTGAGC CAGCCCTGAG CGCGGGCTCC CTAGCAGCTG 901 AGCCTGCTGA GAACAGAAAA GGTACAGCGG TGCCGGTCGA ATGCCCCACA TGTCATAAAA 961 AGTTCCTCAG CAAATATTAT CTAAAAGTCC ACAACAGGAA ACATACTGGG GAGAAACCCT 1021 TTGAGTGTCC CAAATGTGGG AAGTGTTACT TTCGGAAGGA GAACCTCCTG GAGCATGAAG 1081 CCCGGAATTG CATGAACCGC TCGGAACAGG TCTTCACGTG CTCTGTGTGC CAGGAGACAT 1141 TCCGCCGAAG GATGGAGCTG CGGGTGCACA TGGTGTCTCA CACAGGGGAG ATGCCCTACA 1201 AGTGTTCCTC CTGCTCCCAG CAGTTCATGC AGAAGAAGGA CTTGCAGAGC CACATGATCA 1261 AACTTCATGG AGCCCCCAAG CCCCATGCAT GCCCCACCTG TGCCAAGTGC TTCCTGTCTC 1321 GGACAGAGCT GCAGCTGCAT GAAGCTTTCA AGCACCGTGG TGAGAAGCTG TTTGTGTGTG 1381 AGGAGTGTGG GCACCGGGCC TCGAGCCGGA ATGGCCTGCA GATGCACATC AAGGCCAAGC 1441 ACAGGAATGA GAGGCCACAC GTATGTGAGT TCTGCAGCCA CGCCTTCACC CAAAAGGCCA 1501 ATCTCAACAT GCACCTGCGC ACACACACGG GTGAGAAGCC CTTCCAGTGC CACCTCTGTG 1561 GCAAGACCTT CCGAACCCAA GCCAGCCTGG ACAAGCACAA CCGCACCCAC ACCGGGGAAA 1621 GGCCCTTCAG TTGCGAGTTC TGTGAACAGC GCTTCACTGA GAAGGGGCCC CTCCTGAGGC 1681 ACGTGGCCAG CCGCCATCAG GAGGGCCGGC CCCACTTCTG CCAGATATGC GGCAAGACCT 1741 TCAAAGCCGT GGAGCAACTG CGTGTGCACG TCAGACGGCA CAAGGGGGTG AGGAAGTTTG 1801 AGTGCACCGA GTGTGGCTAC AAGTTTACCC GACAGGCCCA CCTGCGGAGG CACATGGAGA 1861 TCCACGACCG GGTAGAGAAC TACAACCCGC GGCAGCGCAA GCTCCGCAAC CTGATCATCG 1921 AGGACGAGAA GATGGTGGTG GTGGCGCTGC AGCCGCCTGC AGAGCTGGAG GTGGGCTCGG 1981 CGGAGGTCAT TGTGGAGTCC CTGGCCCAGG GCGGCCTGGC CTCCCAGCTC CCCGGCCAGA 2041 GACTGTGTGC AGAGGAGAGC TTCACCGGCC CAGGTGTCCT GGAGCCCTCC CTCATCATCA 2101 CAGCTGCTGT CCCCGAGGAC TGTGACACAT ACCCAACTTT CTTGTACAAA GTtggcatta 2161 taagaaagca ttgcttatca atttgttgca acgaac