Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00841
Subject:
NR_033818.2
Aligned Length:
4026
Identities:
1205
Gaps:
2798

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGACGTCAGAGCAGGAAGTGTTTGAGGAAGTCGCGCCGCGCTGCCCGCGTTAAGATTCCCGCATTTTAATGTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTCAGGGGGGTGTCATAGCCCCGGGTTTGGCCGCCCCAGCCCCGCCTTCCCCGCCCCGGGGAGCCCGCCCCCTG  148

Query    1  --------------------------------------ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGT  36
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct  149  CCCCGCGTCCCTGCCGACAGAGTTAGCACGACATCAGTATGAGCTGGTCACCTTCCCTGACAACGCAGACATGT  222

Query   37  GGGGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAAC  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGGGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAAC  296

Query  111  AGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGA  184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGA  370

Query  185  TCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTG  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTG  444

Query  259  GCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTT  332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTT  518

Query  333  TGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTG------------------  388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
Sbjct  519  TGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGGTAAATCCCAGTCCCGGA  592

Query  389  --------------------------------------CCTCTGCGCTTAGATACCTTCATGAAAACAGAATCA  424
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct  593  ATTCAGGCCGTGTCCTTCAGGGAGAGTGTGGTGCCCCTCCTCTGCGCTTAGATACCTTCATGAAAACAGAATCA  666

Query  425  TCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAATTATTGAC  498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAATTATTGAC  740

Query  499  CTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACCTGGCCCC  572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACCTGGCCCC  814

Query  573  AGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTTTGAGTGCA  646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTTTGAGTGCA  888

Query  647  TCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGAAGAGTGAG  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGAAGAGTGAG  962

Query  721  GTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATCT  794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATCT  1036

Query  795  TAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGCA  868
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGCA  1110

Query  869  CGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATATC  942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATATC  1184

Query  943  TTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCAG  1016
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCAG  1258

Query 1017  AATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCCG  1090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCCG  1332

Query 1091  ATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAG----GTGAGCCCTGGCTTCGTACACAC----------CA  1150
            |||||||||||||||||||||||||||||||||||    .||||    |||      |||||          .|
Sbjct 1333  ATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAGTTAAATGAG----GGC------CACACATTGGACATGGA  1396

Query 1151  TCCTGTTTACCTTGGCTGTGCCTCCTGGGAAACTCAAC----ACACTTTCAGATTT-----------CAATTCT  1209
            ||.|||||   ||..||.||.|..| .|.|||.|||.|    |.||  ||||||.|           |||    
Sbjct 1397  TCTTGTTT---TTCTCTTTGACAAC-AGTAAAATCACCTATGAGAC--TCAGATCTCCCCACGGCCCCAA----  1460

Query 1210  GCTT-----TGTCA--TGTAGTCTGTTAATCACACAGTGC------GGATACCTGGCTGGTTTT----------  1260
             |.|     |||||  ||||..||     |||   ||.||      ||| |.||.||  .||.|          
Sbjct 1461  -CCTGAAAGTGTCAGCTGTATCCT-----TCA---AGAGCCCAAGAGGA-ATCTCGC--CTTCTTCCAGCTGAG  1522

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1523  GAAGGTGTGGGGCCAGGTCTGGCACAGCATCCAGACCCTGAAGGAAGATTGCAACCGGCTGCAGCAGGGACAGC  1596

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1597  GAGCCGCCATGATGAATCTCCTCCGAAACAACAGCTGCCTCTCCAAAATGAAGAATTCCATGGCTTCCATGTCT  1670

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1671  CAGCAGCTCAAGGCCAAGTTGGATTTCTTCAAAACCAGCATCCAGATTGACCTGGAGAAGTACAGCGAGCAAAC  1744

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1745  CGAGTTTGGGATCACATCAGATAAACTGCTGCTGGCCTGGAGGGAAATGGAGCAGGCTGTGGAGCTCTGTGGGC  1818

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1819  GGGAGAACGAAGTGAAACTCCTGGTAGAACGGATGATGGCTCTGCAGACCGACATTGTGGACTTACAGAGGAGC  1892

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1893  CCCATGGGCCGGAAGCAGGGGGGAACGCTGGACGACCTAGAGGAGCAAGCAAGGGAGCTGTACAGGAGACTAAG  1966

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1967  GGAAAAACCTCGAGACCAGCGAACTGAGGGTGACAGTCAGGAAATGGTACGGCTGCTGCTTCAGGCAATTCAGA  2040

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2041  GCTTCGAGAAGAAAGTGCGAGTGATCTATACGCAGCTCAGTAAAACTGTGGTTTGCAAGCAGAAGGCGCTGGAA  2114

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2115  CTGTTGCCCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGATGAGAAGACTGTTGTCCGGCTGCAGGAGAA  2188

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2189  GCGGCAGAAGGAGCTCTGGAATCTCCTGAAGATTGCTTGTAGCAAGGTCCGTGGTCCTGTCAGTGGAAGCCCGG  2262

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2263  ATAGCATGAATGCCTCTCGACTTAGCCAGCCTGGGCAGCTGATGTCTCAGCCCTCCACGGCCTCCAACAGCTTA  2336

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2337  CCTGAGCCAGCCAAGAAGAGTGAAGAACTGGTGGCTGAAGCACATAACCTCTGCACCCTGCTAGAAAATGCCAT  2410

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2411  ACAGGACACTGTGAGGGAACAAGACCAGAGTTTCACGGCCCTAGACTGGAGCTGGTTACAGACGGAAGAAGAAG  2484

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2485  AGCACAGCTGCCTGGAGCAGGCCTCATGATGTGGGGGGACTCGACCCCCTGACATGGGGCAGCCCATAGCAGGC  2558

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2559  CTTGTGCAGTGGGGGGACTCGACCCCCTGACATGGGGCTGCCTGGAGCAGGCCGCGTGACGTGGGGCTGCCTGG  2632

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2633  CCGCGGCTCTCACATGGTGGTTCCTGCTGCACTGATGGCCCAGGGGTCTCTGGTATCCAGATGGAGCTCTCGCT  2706

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2707  TCCTCAGCAGCTGTGACTTTCACCCAGGACCCAGGACGCAGCCCTCCGTGGGCACTGCCGGCGCCTTGTCTGCA  2780

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2781  CACTGGAGGTCCTCCATTACAGAGGCCCAGCGCACATCGCTGGCCCCACAAACGTTCAGGGGTACAGCCATGGC  2854

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2855  AGCTCCTTCCTCTGCCGTGAGAAAAGTGCTTGGAGTACGGTTTGCCACACACGTGACTGGACAGTGTCCAATTC  2928

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2929  AAATCTTTCAGGGCAGAGTCCGAGCAGCGCTTGGTGACAGCCTGTCCTCTCCTGCTCTCCAAAGGCCCTGCTCC  3002

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3003  CTGTCCTCTCTCACTTTACAGCTTGTGTTTCTTCTGGATTCAGCTTCTCCTAAACAGACAGTTTAATTATAGTT  3076

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3077  GCGGCCTGGCCCCATCCTCACTTCCTCTTTTTATTTCACTGCTGCTAAAATTGTGTTTTTACCTACTACTTTGG  3150

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3151  TGGTTGTCCTCTTTTCGGCAAAGTTGGAGCGAGTGCCAAGCTCTCCATCTGTGGTCCTTTCTGCCAAGAGCGAC  3224

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3225  TCATAGTAACCAGGATGGGAGAGCAGCTGCCTTATTCTGAATCCCAAAAATTACTTGGGGGTGATTGTCACAGA  3298

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3299  GGAGGGACAGAAAGGGTATCTGCTGACCACCAGCCTGCCTACCCATGCCCATGTCTCCATTCCTGCTCAAGCGT  3372

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3373  GTGTGCTGGGCCGGGGAGTCCCTGTCTCTCACAGCATCTAGCAGTATTATTAAATGGATTCATTTTAAAAATAG  3446

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3447  CTCCTATATTTTGTAACATGTCTCAAACACTCATACTGGGTTCCACAATCCACTGTTAGAATACCTATGGTTAG  3520

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3521  GGCTTCTGAACTAAAATAATGGAAAATTTTAACAATTTGTATAGTGCCTGGATCATTACTAGTGCCATAACCCT  3594

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3595  GCTTCTTCAACATTTCACAGAACTTCTCTTTTATATAAAGGCAAGAGCACAAAATGAGTTCAGATGATCACAAA  3668

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3669  CAGGTGAGTTTTGTTGGAGAAGAAAGTTGGAGTAGGAGACTTTCACAAGTGGTTTCCATGGAGATAGAATGAAG  3742

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3743  CATTCTGTGGTCAAGTAAGTTTAGGGAGCTATTCATGTTTCACTTGCTTTGTGGAGATTCACACTATGCACTGG  3816

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3817  GAAAGTATCTGAAAAGTCTTATAATAAAGAAACAGGCTTAACTTTGTGTAAGAACACTGTTTATCAATGTCATT  3890

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3891  TGGCTATAGAAACATTTTCTCCTGCTGATTGTGTGTGTGAAACATGTATTAACATTCCAATGAACTAGCATTTA  3964

Query 1261  ------------------------------  1260
                                          
Sbjct 3965  ATAAAGCACAATTTTGGAAACCCTGGTAAA  3994

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