Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00841
Subject:
NR_033819.2
Aligned Length:
3908
Identities:
1205
Gaps:
2680

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGACGTCAGAGCAGGAAGTGTTTGAGGAAGTCGCGCCGCGCTGCCCGCGTTAAGATTCCCGCATTTTAATGTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTCAGGGGGGTGTCATAGCCCCGGGTTTGGCCGCCCCAGCCCCGCCTTCCCCGCCCCGGGGAGCCCGCCCCCTG  148

Query    1  --------------------------------------ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGT  36
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct  149  CCCCGCGTCCCTGCCGACAGAGTTAGCACGACATCAGTATGAGCTGGTCACCTTCCCTGACAACGCAGACATGT  222

Query   37  GGGGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAAC  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGGGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAAC  296

Query  111  AGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGA  184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGA  370

Query  185  TCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTG  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTG  444

Query  259  GCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTT  332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTT  518

Query  333  TGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACC  406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACC  592

Query  407  TTCATGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTA  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TTCATGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTA  666

Query  481  ATACACAAAATTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGAC  554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ATACACAAAATTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGAC  740

Query  555  CCTGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCA  628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCTGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCA  814

Query  629  CCCTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAA  702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCCTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAA  888

Query  703  GTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTT  776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTT  962

Query  777  ACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGC  850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGC  1036

Query  851  ACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAAC  924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAAC  1110

Query  925  TTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCT  998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCT  1184

Query  999  GCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGG  1072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGG  1258

Query 1073  GCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAG----GTGAGCCCTGGCTTCGT  1142
            |||||||||||||||||||||||||||||||||||||||||||||||||||||    .||||    |||     
Sbjct 1259  GCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAGTTAAATGAG----GGC-----  1323

Query 1143  ACACAC----------CATCCTGTTTACCTTGGCTGTGCCTCCTGGGAAACTCAAC----ACACTTTCAGATTT  1202
             |||||          .|||.|||||   ||..||.||.|..| .|.|||.|||.|    |.||  ||||||.|
Sbjct 1324  -CACACATTGGACATGGATCTTGTTT---TTCTCTTTGACAAC-AGTAAAATCACCTATGAGAC--TCAGATCT  1390

Query 1203  -----------CAATTCTGCTT-----TGTCA--TGTAGTCTGTTAATCACACAGTGC------GGATACCTGG  1252
                       |||     |.|     |||||  ||||..||     |||   ||.||      ||| |.||.|
Sbjct 1391  CCCCACGGCCCCAA-----CCTGAAAGTGTCAGCTGTATCCT-----TCA---AGAGCCCAAGAGGA-ATCTCG  1450

Query 1253  CTGGTTTT------------------------------------------------------------------  1260
            |  .||.|                                                                  
Sbjct 1451  C--CTTCTTCCAGCTGAGGAAGGTGTGGGGCCAGGTCTGGCACAGCATCCAGACCCTGAAGGAAGATTGCAACC  1522

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1523  GGCTGCAGCAGGGACAGCGAGCCGCCATGATGAATCTCCTCCGAAACAACAGCTGCCTCTCCAAAATGAAGAAT  1596

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1597  TCCATGGCTTCCATGTCTCAGCAGCTCAAGGCCAAGTTGGATTTCTTCAAAACCAGCATCCAGATTGACCTGGA  1670

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1671  GAAGTACAGCGAGCAAACCGAGTTTGGGATCAGAGAACGAAGTGAAACTCCTGGTAGAACGGATGATGGCTCTG  1744

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1745  CAGACCGACATTGTGGACTTACAGAGGAGCCCCATGGGCCGGAAGCAGGGGGGAACGCTGGACGACCTAGAGGA  1818

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1819  GCAAGCAAGGGAGCTGTACAGGAGACTAAGGGAAAAACCTCGAGACCAGCGAACTGAGGGTGACAGTCAGGAAA  1892

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1893  TGGTACGGCTGCTGCTTCAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGAGTGATCTATACGCAGCTCAGTAAA  1966

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1967  ACTGTGGTTTGCAAGCAGAAGGCGCTGGAACTGTTGCCCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGA  2040

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2041  TGAGAAGACTGTTGTCCGGCTGCAGGAGAAGCGGCAGAAGGAGCTCTGGAATCTCCTGAAGATTGCTTGTAGCA  2114

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2115  AGGTCCGTGGTCCTGTCAGTGGAAGCCCGGATAGCATGAATGCCTCTCGACTTAGCCAGCCTGGGCAGCTGATG  2188

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2189  TCTCAGCCCTCCACGGCCTCCAACAGCTTACCTGAGCCAGCCAAGAAGAGTGAAGAACTGGTGGCTGAAGCACA  2262

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2263  TAACCTCTGCACCCTGCTAGAAAATGCCATACAGGACACTGTGAGGGAACAAGACCAGAGTTTCACGGCCCTAG  2336

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2337  ACTGGAGCTGGTTACAGACGGAAGAAGAAGAGCACAGCTGCCTGGAGCAGGCCTCATGATGTGGGGGGACTCGA  2410

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2411  CCCCCTGACATGGGGCAGCCCATAGCAGGCCTTGTGCAGTGGGGGGACTCGACCCCCTGACATGGGGCTGCCTG  2484

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2485  GAGCAGGCCGCGTGACGTGGGGCTGCCTGGCCGCGGCTCTCACATGGTGGTTCCTGCTGCACTGATGGCCCAGG  2558

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2559  GGTCTCTGGTATCCAGATGGAGCTCTCGCTTCCTCAGCAGCTGTGACTTTCACCCAGGACCCAGGACGCAGCCC  2632

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2633  TCCGTGGGCACTGCCGGCGCCTTGTCTGCACACTGGAGGTCCTCCATTACAGAGGCCCAGCGCACATCGCTGGC  2706

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2707  CCCACAAACGTTCAGGGGTACAGCCATGGCAGCTCCTTCCTCTGCCGTGAGAAAAGTGCTTGGAGTACGGTTTG  2780

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2781  CCACACACGTGACTGGACAGTGTCCAATTCAAATCTTTCAGGGCAGAGTCCGAGCAGCGCTTGGTGACAGCCTG  2854

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2855  TCCTCTCCTGCTCTCCAAAGGCCCTGCTCCCTGTCCTCTCTCACTTTACAGCTTGTGTTTCTTCTGGATTCAGC  2928

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2929  TTCTCCTAAACAGACAGTTTAATTATAGTTGCGGCCTGGCCCCATCCTCACTTCCTCTTTTTATTTCACTGCTG  3002

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3003  CTAAAATTGTGTTTTTACCTACTACTTTGGTGGTTGTCCTCTTTTCGGCAAAGTTGGAGCGAGTGCCAAGCTCT  3076

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3077  CCATCTGTGGTCCTTTCTGCCAAGAGCGACTCATAGTAACCAGGATGGGAGAGCAGCTGCCTTATTCTGAATCC  3150

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3151  CAAAAATTACTTGGGGGTGATTGTCACAGAGGAGGGACAGAAAGGGTATCTGCTGACCACCAGCCTGCCTACCC  3224

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3225  ATGCCCATGTCTCCATTCCTGCTCAAGCGTGTGTGCTGGGCCGGGGAGTCCCTGTCTCTCACAGCATCTAGCAG  3298

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3299  TATTATTAAATGGATTCATTTTAAAAATAGCTCCTATATTTTGTAACATGTCTCAAACACTCATACTGGGTTCC  3372

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3373  ACAATCCACTGTTAGAATACCTATGGTTAGGGCTTCTGAACTAAAATAATGGAAAATTTTAACAATTTGTATAG  3446

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3447  TGCCTGGATCATTACTAGTGCCATAACCCTGCTTCTTCAACATTTCACAGAACTTCTCTTTTATATAAAGGCAA  3520

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3521  GAGCACAAAATGAGTTCAGATGATCACAAACAGGTGAGTTTTGTTGGAGAAGAAAGTTGGAGTAGGAGACTTTC  3594

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3595  ACAAGTGGTTTCCATGGAGATAGAATGAAGCATTCTGTGGTCAAGTAAGTTTAGGGAGCTATTCATGTTTCACT  3668

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3669  TGCTTTGTGGAGATTCACACTATGCACTGGGAAAGTATCTGAAAAGTCTTATAATAAAGAAACAGGCTTAACTT  3742

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3743  TGTGTAAGAACACTGTTTATCAATGTCATTTGGCTATAGAAACATTTTCTCCTGCTGATTGTGTGTGTGAAACA  3816

Query 1261  ------------------------------------------------------------  1260
                                                                        
Sbjct 3817  TGTATTAACATTCCAATGAACTAGCATTTAATAAAGCACAATTTTGGAAACCCTGGTAAA  3876

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