Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00841
Subject:
XM_011544520.2
Aligned Length:
2475
Identities:
922
Gaps:
1530

Alignment

Query    1  ----------------------------ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGG  46
                                        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGCTCAGAAAGTTAGCACGACATCAGTATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGG  74

Query   47  AAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAACAGGTGAGCAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
Sbjct   75  AAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCA----------------  132

Query  121  ATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGATCCAGATCAT  194
                                                                                      
Sbjct  133  --------------------------------------------------------------------------  132

Query  195  GAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGCGCCCAATG  268
                                                                                      
Sbjct  133  --------------------------------------------------------------------------  132

Query  269  ACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTGAGAACTGC  342
                                                                                      
Sbjct  133  --------------------------------------------------------------------------  132

Query  343  TGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTTCATGAAAA  416
                                                         |||||||||||||||||||||||||||||
Sbjct  133  ---------------------------------------------GCCTCTGCGCTTAGATACCTTCATGAAAA  161

Query  417  CAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAA  490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  162  CAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAA  235

Query  491  TTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTAC  564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  236  TTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTAC  309

Query  565  CTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTT  638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  310  CTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTT  383

Query  639  TGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGA  712
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  384  TGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGA  457

Query  713  AGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCC  786
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  458  AGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCC  531

Query  787  AATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACA  860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  532  AATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACA  605

Query  861  GAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGG  934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  606  GAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGG  679

Query  935  TTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTG  1008
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  680  TTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTG  753

Query 1009  AAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTT  1082
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  754  AAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTT  827

Query 1083  GATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAG----GTGAGCCCTGGCTTCGTACACAC----  1148
            |||||||||||||||||||||||||||||||||||||||||||    .||||    |||      |||||    
Sbjct  828  GATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAGTTAAATGAG----GGC------CACACATTG  891

Query 1149  ------CATCCTGTTTACCTTGGCTGTGCCTCCTGGGAAACTCAAC----ACACTTTCAGATTT----------  1202
                  .|||.|||||   ||..||.||.|..| .|.|||.|||.|    |.||  ||||||.|          
Sbjct  892  GACATGGATCTTGTTT---TTCTCTTTGACAAC-AGTAAAATCACCTATGAGAC--TCAGATCTCCCCACGGCC  959

Query 1203  -CAATTCTGCTT-----TGTCA--TGTAGTCTGTTAATCACACAGTGC------GGATACCTGGCTGGTTTT--  1260
             |||     |.|     |||||  ||||..||     |||   ||.||      ||| |.||.||  .||.|  
Sbjct  960  CCAA-----CCTGAAAGTGTCAGCTGTATCCT-----TCA---AGAGCCCAAGAGGA-ATCTCGC--CTTCTTC  1017

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1018  CAGCTGAGGAAGGTGTGGGGCCAGGTCTGGCACAGCATCCAGACCCTGAAGGAAGATTGCAACCGGCTGCAGCA  1091

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1092  GGGACAGCGAGCCGCCATGATGAATCTCCTCCGAAACAACAGCTGCCTCTCCAAAATGAAGAATTCCATGGCTT  1165

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1166  CCATGTCTCAGCAGCTCAAGGCCAAGTTGGATTTCTTCAAAACCAGCATCCAGATTGACCTGGAGAAGTACAGC  1239

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1240  GAGCAAACCGAGTTTGGGATCACATCAGATAAACTGCTGCTGGCCTGGAGGGAAATGGAGCAGGCTGTGGAGCT  1313

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1314  CTGTGGGCGGGAGAACGAAGTGAAACTCCTGGTAGAACGGATGATGGCTCTGCAGACCGACATTGTGGACTTAC  1387

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1388  AGAGGAGCCCCATGGGCCGGAAGCAGGGGGGAACGCTGGACGACCTAGAGGAGCAAGCAAGGGAGCTGTACAGG  1461

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1462  AGACTAAGGGAAAAACCTCGAGACCAGCGAACTGAGGGTGACAGTCAGGAAATGGTACGGCTGCTGCTTCAGGC  1535

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1536  AATTCAGAGCTTCGAGAAGAAAGTGCGAGTGATCTATACGCAGCTCAGTAAAACTGTGGTTTGCAAGCAGAAGG  1609

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1610  CGCTGGAACTGTTGCCCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGATGAGAAGACTGTTGTCCGGCTG  1683

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1684  CAGGAGAAGCGGCAGAAGGAGCTCTGGAATCTCCTGAAGATTGCTTGTAGCAAGGTCCGTGGTCCTGTCAGTGG  1757

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1758  AAGCCCGGATAGCATGAATGCCTCTCGACTTAGCCAGCCTGGGCAGCTGATGTCTCAGCCCTCCACGGCCTCCA  1831

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1832  ACAGCTTACCTGAGCCAGCCAAGAAGAGTGAAGAACTGGTGGCTGAAGCACATAACCTCTGCACCCTGCTAGAA  1905

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1906  AATGCCATACAGGACACTGTGAGGGAACAAGACCAGAGTTTCACGGTAACAGCTTGTGTGAGACTCCTGCGATT  1979

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1980  CCATGTCCTTTCTTTCTATGGCAAAATAGAAGAGAAAATGGAAATGCAATCTGGCATTATCCTCAACCTCAGTG  2053

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2054  TTTGTTTGTTTGCTTGTTTATTTGTGACAGGGTCTCTCTCTCTCACCCAGGCTGGAGTGCAGTGGCATGATCTT  2127

Query 1261  ---------------------------------  1260
                                             
Sbjct 2128  GGCTCACTGCAACCTCCGCTTCCCGGGTTCAAG  2160

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