Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00841
- Subject:
- XR_001745530.2
- Aligned Length:
- 3805
- Identities:
- 1205
- Gaps:
- 2577
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACGTCAGAGCAGGAAGTGTTTGAGGAAGTCGCGCCGCGCTGCCCGCGTTAAGATTCCCGCATTTTAATGTTTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGGGGGTGTCATAGCCCCGGGTTTGGCCGCCCCAGCCCCGCCTTCCCCGCCCCGGGGAGCCCGCCCCCTGCC 148
Query 1 ------------------------------------ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGG 38
||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCGCGTCCCTGCCGACAGAGTTAGCACGACATCAGTATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGG 222
Query 39 GGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAACAG 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAACAG 296
Query 113 GTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGATC 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGATC 370
Query 187 CAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGC 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGC 444
Query 261 GCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTG 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTG 518
Query 335 AGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTT 592
Query 409 CATGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAAT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CATGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAAT 666
Query 483 ACACAAAATTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCC 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACACAAAATTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCC 740
Query 557 TGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACC 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACC 814
Query 631 CTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGT 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGT 888
Query 705 GCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTAC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTAC 962
Query 779 CCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCAC 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCAC 1036
Query 853 CCCCGACAGAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTT 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCCCGACAGAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTT 1110
Query 927 AAAGCTGGTTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGC 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAAGCTGGTTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGC 1184
Query 1001 AGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGC 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGC 1258
Query 1075 CTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAG----GTGAGCCCTGGCTTCGTAC 1144
||||||||||||||||||||||||||||||||||||||||||||||||||| .|||| ||| |
Sbjct 1259 CTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAGTTAAATGAG----GGC------C 1322
Query 1145 ACAC----------CATCCTGTTTACCTTGGCTGTGCCTCCTGGGAAACTCAAC----ACACTTTCAGATTT-- 1202
|||| .|||.||||| ||..||.||.|..| .|.|||.|||.| |.|| ||||||.|
Sbjct 1323 ACACATTGGACATGGATCTTGTTT---TTCTCTTTGACAAC-AGTAAAATCACCTATGAGAC--TCAGATCTCC 1390
Query 1203 ---------CAATTCTGCTT-----TGTCA--TGTAGTCTGTTAATCACACAGTGC------GGATACCTGGCT 1254
||| |.| ||||| ||||..|| ||| ||.|| ||| |.||.||
Sbjct 1391 CCACGGCCCCAA-----CCTGAAAGTGTCAGCTGTATCCT-----TCA---AGAGCCCAAGAGGA-ATCTCGC- 1449
Query 1255 GGTTTT-------------------------------------------------------------------- 1260
.||.|
Sbjct 1450 -CTTCTTCCAGCTGAGGAAGGTGTGGGGCCAGGTCTGGCACAGCATCCAGACCCTGAAGGAAGATTGCAACCGG 1522
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1523 CTGCAGCAGGGACAGCGAGCCGCCATGATGAATCTCCTCCGAAACAACAGCTGCCTCTCCAAAATGAAGAATTC 1596
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1597 CATGGCTTCCATGTCTCAGCAGCTCAAGGCCAAGTTGGATTTCTTCAAAACCAGCATCCAGATTGACCTGGAGA 1670
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1671 AGTACAGCGAGCAAACCGAGTTTGGGATCAGAGAACGAAGTGAAACTCCTGGTAGAACGGATGATGGCTCTGCA 1744
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1745 GACCGACATTGTGGACTTACAGAGGAGCCCCATGGGCCGGAAGCAGGGGGGAACGCTGGACGACCTAGAGGAGC 1818
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1819 AAGCAAGGGAGCTGTACAGGAGACTAAGGGAAAAACCTCGAGACCAGCGAACTGAGGGTGACAGTCAGGAAATG 1892
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1893 GTACGGCTGCTGCTTCAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGAGTGATCTATACGCAGCTCAGTAAAAC 1966
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1967 TGTGGTTTGCAAGCAGAAGGCGCTGGAACTGTTGCCCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGATG 2040
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2041 AGAAGACTGTTGTCCGGCTGCAGGAGAAGCGGCAGAAGGAGCTCTGGAATCTCCTGAAGATTGCTTGTAGCAAG 2114
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2115 GTCCGTGGTCCTGTCAGTGGAAGCCCGGATAGCATGAATGCCTCTCGACTTAGCCAGCCTGGGCAGCTGATGTC 2188
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2189 TCAGCCCTCCACGGCCTCCAACAGCTTACCTGAGCCAGCCAAGAAGAGGCCCTAGACTGGAGCTGGTTACAGAC 2262
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2263 GGAAGAAGAAGAGCACAGCTGCCTGGAGCAGGCCTCATGATGTGGGGGGACTCGACCCCCTGACATGGGGCAGC 2336
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2337 CCATAGCAGGCCTTGTGCAGTGGGGGGACTCGACCCCCTGACATGGGGCTGCCTGGAGCAGGCCGCGTGACGTG 2410
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2411 GGGCTGCCTGGCCGCGGCTCTCACATGGTGGTTCCTGCTGCACTGATGGCCCAGGGGTCTCTGGTATCCAGATG 2484
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2485 GAGCTCTCGCTTCCTCAGCAGCTGTGACTTTCACCCAGGACCCAGGACGCAGCCCTCCGTGGGCACTGCCGGCG 2558
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2559 CCTTGTCTGCACACTGGAGGTCCTCCATTACAGAGGCCCAGCGCACATCGCTGGCCCCACAAACGTTCAGGGGT 2632
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2633 ACAGCCATGGCAGCTCCTTCCTCTGCCGTGAGAAAAGTGCTTGGAGTACGGTTTGCCACACACGTGACTGGACA 2706
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2707 GTGTCCAATTCAAATCTTTCAGGGCAGAGTCCGAGCAGCGCTTGGTGACAGCCTGTCCTCTCCTGCTCTCCAAA 2780
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2781 GGCCCTGCTCCCTGTCCTCTCTCACTTTACAGCTTGTGTTTCTTCTGGATTCAGCTTCTCCTAAACAGACAGTT 2854
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2855 TAATTATAGTTGCGGCCTGGCCCCATCCTCACTTCCTCTTTTTATTTCACTGCTGCTAAAATTGTGTTTTTACC 2928
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2929 TACTACTTTGGTGGTTGTCCTCTTTTCGGCAAAGTTGGAGCGAGTGCCAAGCTCTCCATCTGTGGTCCTTTCTG 3002
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3003 CCAAGAGCGACTCATAGTAACCAGGATGGGAGAGCAGCTGCCTTATTCTGAATCCCAAAAATTACTTGGGGGTG 3076
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3077 ATTGTCACAGAGGAGGGACAGAAAGGGTATCTGCTGACCACCAGCCTGCCTACCCATGCCCATGTCTCCATTCC 3150
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3151 TGCTCAAGCGTGTGTGCTGGGCCGGGGAGTCCCTGTCTCTCACAGCATCTAGCAGTATTATTAAATGGATTCAT 3224
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3225 TTTAAAAATAGCTCCTATATTTTGTAACATGTCTCAAACACTCATACTGGGTTCCACAATCCACTGTTAGAATA 3298
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3299 CCTATGGTTAGGGCTTCTGAACTAAAATAATGGAAAATTTTAACAATTTGTATAGTGCCTGGATCATTACTAGT 3372
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3373 GCCATAACCCTGCTTCTTCAACATTTCACAGAACTTCTCTTTTATATAAAGGCAAGAGCACAAAATGAGTTCAG 3446
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3447 ATGATCACAAACAGGTGAGTTTTGTTGGAGAAGAAAGTTGGAGTAGGAGACTTTCACAAGTGGTTTCCATGGAG 3520
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3521 ATAGAATGAAGCATTCTGTGGTCAAGTAAGTTTAGGGAGCTATTCATGTTTCACTTGCTTTGTGGAGATTCACA 3594
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3595 CTATGCACTGGGAAAGTATCTGAAAAGTCTTATAATAAAGAAACAGGCTTAACTTTGTGTAAGAACACTGTTTA 3668
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3669 TCAATGTCATTTGGCTATAGAAACATTTTCTCCTGCTGATTGTGTGTGTGAAACATGTATTAACATTCCAATGA 3742
Query 1261 ------------------------------- 1260
Sbjct 3743 ACTAGCATTTAATAAAGCACAATTTTGGAAA 3773
