Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00923
- Subject:
- NR_110279.3
- Aligned Length:
- 4875
- Identities:
- 765
- Gaps:
- 4108
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTTGCTGTGGAAGCCCCATAGGCAGGAGGCCCCCGGGCAGCACATCCTGTCTGCTTGTGTCTGCTGCAGAGTT 74
Query 1 -----------------------------------------------------ATGTCTCCCCACCCCACCGCC 21
|||||||||||||||||||||
Sbjct 75 CTGTCCTTGCATTGGTGCGCCTCAGGCCAGGCTGCACTGCTGGGACCTGGGCCATGTCTCCCCACCCCACCGCC 148
Query 22 CTCCTGGGCCTAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCCTCCATCTC 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTCCTGGGCCTAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCCTCCATCTC 222
Query 96 GGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGGGGTTCAAA 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGGGGTTCAAA 296
Query 170 CATTCCGCCTGGAGAGGGAGAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTCCATCTGAG 243
|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CATTCCGCCTGGAGAGGGACAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTCCATCTGAG 370
Query 244 TCAGAGGCCAGATTCCGCATTGACTCAGTAAGTGAAGGAAATGCCGGGCCTTATCGCTGCATCTATTATAAGCC 317
|||||||||||||||||||||||||||
Sbjct 371 TCAGAGGCCAGATTCCGCATTGACTCA----------------------------------------------- 397
Query 318 CCCTAAATGGTCTGAGCAGAGTGACTACCTGGAGCTGCTGGTGAAAGAAACCTCTGGAGGCCCGGACTCCCCGG 391
|||.|||||||||||||||||||||||
Sbjct 398 -----------------------------------------------AAAGCTCTGGAGGCCCGGACTCCCCGG 424
Query 392 ACACAGAGCCCGGCTCCTCAGCTGGACCCACGCAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 ACACAGAGCCCGGCTCCTCAGCTGGACCCACGCAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCT 498
Query 466 TCCCAAGGCCTGAAAGCTGAGCATCTGTATATTCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TCCCAAGGCCTGAAAGCTGAGCATCTGTATATTCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCT 572
Query 540 CCTGGTCCTCTTCTGCCTCCATCGCCAGAATCAGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 CCTGGTCCTCTTCTGCCTCCATCGCCAGAATCAGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGA 646
Query 614 AGCCACAGCAGAGGCCTGACCTGGCTGTTGATGTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AGCCACAGCAGAGGCCTGACCTGGCTGTTGATGTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTT 720
Query 688 CCTGAGAAGGACAGAGAGACGGACACCTCGGCCCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCT 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCTGAGAAGGACAGAGAGACGGACACCTCGGCCCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCT 794
Query 762 GGACCACTGGGCCCTCACACAGAGGACAGCCCGGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GGACCACTGGGCCCTCACACAGAGGACAGCCCGGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCA 868
Query 836 TCACGTATGCAGCCGTTGCCAGACAC------------------------------------------------ 861
||||||||||||||||||||||||||
Sbjct 869 TCACGTATGCAGCCGTTGCCAGACACTGACCCCATACCCACCTGGCCTCTGCACCTGAGGGTAGAAAGTCACTC 942
Query 862 -------------------------------------------------------------------------- 861
Sbjct 943 TAGGAAAAGCCTGAAGCAGCCATTTGGAAGGCTTCCTGTTGGATTCCTCTTCATCTAGAAAGCCAGCCAGGCAG 1016
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1017 CTGTCCTGGAGACAAGAGCTGGAGACTGGAGGTTTCTAACCAGCATCCAGAAGGTTCGTTAGCCAGGTGGTCCC 1090
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1091 TTCTACAATCGAGCAGCTCCTTGGACAGACTGTTTCTCAGTTATTTCCAGAGACCCAGCTACAGTTCCCTGGCT 1164
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1165 GTTTCTAGAGACCCAGCTTTATTCACCTGACTGTTTCCAGAGACCCAGCTAAAGTCACCTGCCTGTTCTAAAGG 1238
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1239 CCCAGCTACAGCCAATCAGCCGATTTCCTGAGCAGTGATGCCACCTCCAAGCTTGTCCTAGGTGTCTGCTGTGA 1312
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1313 ACCTCCAGTGACCCCAGAGACTTTGCTGTAATTATCTGCCCTGCTGACCCTAAAGACCTTCCTAGAAGTCAAGA 1386
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1387 GCTAGCCTTGAGACTGTGCTATACACACACAGCTGAGAGCCAAGCCCAGTTCTCTGGGTTGTGCTTTACTCCAC 1460
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1461 GCATCAATAAATAATTTTGAAGGCCTCACATCTGGCAGCCCCAGGCCTGGTCCTGGGTGCATAGGTCTCTCGGA 1534
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1535 CCCACTCTCTGCCTTCACAGTTGTTCAAAGCTGAGTGAGGGAAACAGGACTTACGAAAACGTGTCAGCGTTTTC 1608
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1609 TTTTTAAAATTTAATTGATCAGGATTGTACGTATTCAAGGTGTAAAATGTGATAATTTGTCGTACACGTACATT 1682
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1683 GTGCAATGACAGTCACAATCAATTCCTCAGCGCACCCATCGCCACAGATACGATACATTAGATATTCTGAACTT 1756
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1757 GCTCATCTTAGGACTTCACATTGGTGTCAGTGTTTTCTGACAAATCACGTGTATCAGGAATGAATGAGGGAGGT 1830
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1831 GTGGCTGGGTGAAGGCAGAGAGCCGACCCTACAGGTCCACATCTGCACATACATGCACAGGAATGCATGCTCTC 1904
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1905 ACACACATGCATACACACACGCACACACACAGACATGCACATACACTCACACGCCCCAGGAAATCCAAGGAATC 1978
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1979 ACTGAGCCTGCTGTTGGTTGAGGCATTTCTGAGTATCCACCCTACCTGTAGGGTCAGATGTACTGATTGACACA 2052
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2053 GAAAATTACCCTATGTACCACTAGGAGGCGGCAGAATCTCATTTGGGTTAATCTGTGTTTGTCTTTAAAAAACA 2126
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2127 AAAACAGGCCGGGCATGGAGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACGAGG 2200
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2201 TCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAAATTAGCCGGG 2274
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2275 TGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGGAGGAGAATGGCGTGAACCCGGGAGGCGG 2348
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2349 AGTTTGCAGTGAGCCGAGGTGGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAGAAA 2422
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2423 AGAAAAGAAAAGAAAGATTTTTAAGAATTCAGCAAAAACTCAGCCAGCTCTTTCTATGGGGCAGTTGCTAATTT 2496
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2497 AGTTCTAGGCAAACGTGGACACATTAAATTCTCCTACAAACCCTCCACAGCGTGCTCTATTATTTTCCTCATTT 2570
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2571 ATAAAAACAGAAACTATGGACCGAGACATGAAGTAACCTGTCCAAGGTCGGCCAAGTCTCAGAGACAGGGGCTT 2644
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2645 CAGACCCACCTGAGGCTCCTGACTCCACATTATGAACCCCGGGATGGGCTGCAGCTCGGTCTGCTGGGAGGTTT 2718
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2719 CTGTGCTGGTTCAAAGAGGGTGGTACCTGACTGGCCTACCCAATTTTAATTTGTACTGAGCTTTAATTTTCTAT 2792
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2793 TTGTGCTCAGGTTTAATTTCCTCCTGGGATCTGCTTCCCAGTGCTGTACTCTGTATCTTTGCTTTCTTGTGTGA 2866
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2867 ACATTGTGACCGATTTTCCCTGTTCTTCACGTGGGACACATTCTCCCTGCTCTGTCTGTCTCTGTCCCTGTCTC 2940
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2941 TCTTTCTGTCTTTCTCTCTCACTGTGTGTCTCTCTGTCTCTCTCTCTCTTTTTTTTTTTTTTTGAGATGGAGTT 3014
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3015 TCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAG 3088
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3089 CGATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGATTACAGGCATGCACCACCACACACGGCTAATTTTTTGTA 3162
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3163 TTTTTGTTAGAGACGGGGGGCTCTCCATGTTGCTCAGGCTGGTCTTGAACTCCCGACCTCAGGTGATCTGCCCA 3236
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3237 CCTCAGCCTCCCAAAGTCCTGGGATTACAGGCATGAGCCACTGCGTCCAGCCGTCTTTGTCTCTTTTTCTACAT 3310
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3311 CTCTGTCTTTCTTCTCTGGTTGTTTTTCAACCATCAGCTGGGTGTTTTCTCCCATAACGTCTTGTTTGTTTGAC 3384
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3385 TATGAGGTTGACAGGTGGGTACATGAACTCTATAGCAGAAGGTGGACAGTCTGCACATAGCAGAGGATGGGTGA 3458
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3459 ATTTTTCTACCCCTTGCAGAGCACAGGAGAGCTGAGCAGATGCCAGTGTCTGCTCCAGTGTAAGGAAGTCCAGG 3532
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3533 AAGTTCAGGTGGTGAGGTCACAGTGGAAAGCAGGACAGATAGAGTTTAGGGGAAATTAAGCAAAAATACCACAC 3606
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3607 TGTTATTTCTTGACATATTAGTGGAAAGAGGAAGGGCCCAGAGAGAAGACAGAAAATTAGATGCAGGGGCTTGT 3680
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3681 TTTTTCTCTTGACTTGCCAACCCGCCCAACGCAGGGGCCAGAACTCAGGGTGGTGAGATCTGGGAACATTGCTG 3754
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3755 TGCGGAGAAGATGTCCCTCCTGCTGCACGGGCCCCCAAGCACCACCTGGGGGAAGAGCCATGTTTAATTCACCT 3828
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3829 GGCAGTGCAGTGTGGCCAGGCAGAGAGGGAGGGCCTACCCTGTGCTTATGATCCCACCCCAGTTCCCCTGGGGT 3902
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3903 GTGCCCTGGCGGTGAACACCAGGAGGCTGCAGTGGGGCCCAACGTGAAAGGGAGGAGCAGCCTCACCGGGGCCA 3976
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3977 GATGGGGCAGCAGCAGATATTCACAGATGTCCCTGTGAGTAACCAGGGCAGAGGCCAGGGGTCTGGCCTTCCCT 4050
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4051 TTCTTGGAGCCCTGGGCCAGCTGGGCAAGGCGTTGAGAGAAAGATTACCCGGTGACCTTTATCAAAGCAGAGTA 4124
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4125 AGGAGGGCTTTATTCAGAACCATCACTGTAGGTACCAGGACCCCAGCGGTGGGATTTTGTAGTAGGGGAAAGAA 4198
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4199 AATGGGCTCGACGTTGAATACAGCATGAACAAGTGAGAATGTTTGTTATACAAACTATAGGGTGGACTTTTTTT 4272
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4273 TTCTTTTTTTTAACTTTTTTTTACCTTTTAGTGTAAAACTGAACATAGAAAATAAATTCATGAAGAAGGGATAT 4346
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4347 TTTCTGAGGGTGTCCAGGGCTGCCCAACACCTCGTCTACCTTCTCTGTCATAGCCCCATTTAAAACACTCTCTC 4420
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4421 TGGATGAATACACCAAACCTCACAGTCTTTGCTCTCTTGCTAGGAAGAGGAGCAAGAGCGTGTTTCACTCTTGG 4494
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4495 CTCCTGCTTACACACCTGCTGTCCAATGGAAACTACTACTTAAGACATTTAAAAATAGTTGTGGTGATAGCATG 4568
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4569 TTGTGTTTTGGTTGGTGATGCCAGTTAGTCTCTGAAAACTTTCTGTGATGAGTGTAAAATTCTACACCTTAATC 4642
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4643 TCCTTTCTTGTAGGATCTGGGAAGCAGTATGCACTTGATTGCACCAAAGATTTTACGTTCATAGAAAATTTCTG 4716
Query 862 ----------------------------------------------------------------- 861
Sbjct 4717 GCATCTGTGTGAAGAAAGTAAACTATATCTTCCATTTAGACAAATAAAATATCTTTTTGATAAAA 4781
