Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00924
- Subject:
- NR_110280.3
- Aligned Length:
- 5215
- Identities:
- 319
- Gaps:
- 4858
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTTGCTGTGGAAGCCCCATAGGCAGGAGGCCCCCGGGCAGCACATCCTGTCTGCTTGTGTCTGCTGCAGAGTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGTCCTTGCATTGGTGCGCCTCAGGCCAGGCTGCACTGCTGGGACCTGGGCCATGTCTCCCCACCCCACCGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCCTGGGCCTAGCAAGAAGGATTACATGGAGACAGTGATGTCGAGGAGGGTTGGCTTGGTCGTTATGAAATGC 222
Query 1 ---ATG-------TCTCCA------CACCT-----------------------------CACTG-------CTC 22
||| .||||| |.||| ||||| .||
Sbjct 223 TGAATGCCCCCCAGCTCCATCGAGCCCCCTTTTGACAGCAGCCCCGTAAGGAGACTGGGCACTGGGCATTTTTC 296
Query 23 TC-CTGGGCCT--------AGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGGGGCCCTTCCCAGACCC 87
|| |||||.|| ||||||||||||||||||||||||||||||||||||||..|..||.|||||||||
Sbjct 297 TCACTGGGGCTTCTCTTCCAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCC 370
Query 88 TCCATCTCGGCTGAGCCAGGCACTGTGATCTCCCCGGGGAGCCATGTGACTTTCATGTGCCGGGGCCCGGTTGG 161
|||||||||||||||||||||||.||||||.|||.|||||||||||||||||||.|||||||||||||||||||
Sbjct 371 TCCATCTCGGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGG 444
Query 162 GGTTCAAACATTCCGCCTGGAGAGGGAGGATAGAGCCAAGTACAAAGATAGTTATAATGTGTTTCGACTTGGTC 235
|||||||||||||||||||||||||||...||||.|||..|||||.||||.|.|..||||||.||.|..|.|||
Sbjct 445 GGTTCAAACATTCCGCCTGGAGAGGGACAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTC 518
Query 236 CATCTGAGTCAGAGGCCAGATTCCACATTGACTCAGTAAGTGAAGGAAATGCCGGGCTTTATCGCTGCCTCTAT 309
||||||||||||||||||||||||.||||||||||
Sbjct 519 CATCTGAGTCAGAGGCCAGATTCCGCATTGACTCA--------------------------------------- 553
Query 310 TATAAGCCCCCTGGATGGTCTGAGCACAGTGACTTCCTGGAGCTGCTGGTGAAAGAAAGCTCTGGAGGCCCGGA 383
|||||||||||||||||||
Sbjct 554 -------------------------------------------------------AAAGCTCTGGAGGCCCGGA 572
Query 384 CTCCCCGGACACAGAGCCCGGCTCCTCAGCTGGGACTGTGCCAGG-----CA-CTGAAGCCTCCGGATT----- 446
||||||||||||||||||||||||||||||| ||.|.||..|||| || |||.|| .|||||
Sbjct 573 CTCCCCGGACACAGAGCCCGGCTCCTCAGCT-GGTCAGTAGCAGGGCCCTCAGCTGGAG----GGGATTACAGG 641
Query 447 --------TGATGC---------------ACCA----------------------------------------- 456
||.||| .|||
Sbjct 642 GGAATCTGTGCTGCGGATGCTGTTCCGGGTCCAGCCCTCTGCCCTGGGCTTGGAGTCAAGGTCTAGGGAGGCCA 715
Query 457 -------------------------------------------------------------------------- 456
Sbjct 716 CGGGAAGGCACCGACACCCACCAAGCTCTGGGAGGTCGCTAATGCTCACAGAGACCATAGCAGCAATGGACCCA 789
Query 457 -------------------------------------------------------------------------- 456
Sbjct 790 CGCAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCTTCCCAAGGCCTGAAAGCTGAGCATCTGTAT 863
Query 457 -------------------------------------------------------------------------- 456
Sbjct 864 ATTCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCTCCTGGTCCTCTTCTGCCTCCATCGCCAGAA 937
Query 457 -------------------------------------------------------------------------- 456
Sbjct 938 TCAGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGAAGCCACAGCAGAGGCCTGACCTGGCTGTTG 1011
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1012 ATGTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTTCCTGAGAAGGACAGAGAGACGGACACCTCG 1085
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1086 GCCCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCTGGACCACTGGGCCCTCACACAGAGGACAGC 1159
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1160 CCGGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCATCACGTATGCAGCCGTTGCCAGACACTGAC 1233
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1234 CCCATACCCACCTGGCCTCTGCACCTGAGGGTAGAAAGTCACTCTAGGAAAAGCCTGAAGCAGCCATTTGGAAG 1307
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1308 GCTTCCTGTTGGATTCCTCTTCATCTAGAAAGCCAGCCAGGCAGCTGTCCTGGAGACAAGAGCTGGAGACTGGA 1381
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1382 GGTTTCTAACCAGCATCCAGAAGGTTCGTTAGCCAGGTGGTCCCTTCTACAATCGAGCAGCTCCTTGGACAGAC 1455
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1456 TGTTTCTCAGTTATTTCCAGAGACCCAGCTACAGTTCCCTGGCTGTTTCTAGAGACCCAGCTTTATTCACCTGA 1529
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1530 CTGTTTCCAGAGACCCAGCTAAAGTCACCTGCCTGTTCTAAAGGCCCAGCTACAGCCAATCAGCCGATTTCCTG 1603
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1604 AGCAGTGATGCCACCTCCAAGCTTGTCCTAGGTGTCTGCTGTGAACCTCCAGTGACCCCAGAGACTTTGCTGTA 1677
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1678 ATTATCTGCCCTGCTGACCCTAAAGACCTTCCTAGAAGTCAAGAGCTAGCCTTGAGACTGTGCTATACACACAC 1751
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1752 AGCTGAGAGCCAAGCCCAGTTCTCTGGGTTGTGCTTTACTCCACGCATCAATAAATAATTTTGAAGGCCTCACA 1825
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1826 TCTGGCAGCCCCAGGCCTGGTCCTGGGTGCATAGGTCTCTCGGACCCACTCTCTGCCTTCACAGTTGTTCAAAG 1899
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1900 CTGAGTGAGGGAAACAGGACTTACGAAAACGTGTCAGCGTTTTCTTTTTAAAATTTAATTGATCAGGATTGTAC 1973
Query 457 -------------------------------------------------------------------------- 456
Sbjct 1974 GTATTCAAGGTGTAAAATGTGATAATTTGTCGTACACGTACATTGTGCAATGACAGTCACAATCAATTCCTCAG 2047
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2048 CGCACCCATCGCCACAGATACGATACATTAGATATTCTGAACTTGCTCATCTTAGGACTTCACATTGGTGTCAG 2121
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2122 TGTTTTCTGACAAATCACGTGTATCAGGAATGAATGAGGGAGGTGTGGCTGGGTGAAGGCAGAGAGCCGACCCT 2195
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2196 ACAGGTCCACATCTGCACATACATGCACAGGAATGCATGCTCTCACACACATGCATACACACACGCACACACAC 2269
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2270 AGACATGCACATACACTCACACGCCCCAGGAAATCCAAGGAATCACTGAGCCTGCTGTTGGTTGAGGCATTTCT 2343
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2344 GAGTATCCACCCTACCTGTAGGGTCAGATGTACTGATTGACACAGAAAATTACCCTATGTACCACTAGGAGGCG 2417
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2418 GCAGAATCTCATTTGGGTTAATCTGTGTTTGTCTTTAAAAAACAAAAACAGGCCGGGCATGGAGGCTCACGCCT 2491
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2492 GTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC 2565
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2566 GGTGAAACCCCATCTCTACTAAAAATACAAAAAAATTAGCCGGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTA 2639
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2640 CTCGGGAGGCTGAGGGAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGGTGGTGCCACTG 2713
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2714 CACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAGAAAAGAAAAGAAAAGAAAGATTTTTAAGAATTC 2787
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2788 AGCAAAAACTCAGCCAGCTCTTTCTATGGGGCAGTTGCTAATTTAGTTCTAGGCAAACGTGGACACATTAAATT 2861
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2862 CTCCTACAAACCCTCCACAGCGTGCTCTATTATTTTCCTCATTTATAAAAACAGAAACTATGGACCGAGACATG 2935
Query 457 -------------------------------------------------------------------------- 456
Sbjct 2936 AAGTAACCTGTCCAAGGTCGGCCAAGTCTCAGAGACAGGGGCTTCAGACCCACCTGAGGCTCCTGACTCCACAT 3009
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3010 TATGAACCCCGGGATGGGCTGCAGCTCGGTCTGCTGGGAGGTTTCTGTGCTGGTTCAAAGAGGGTGGTACCTGA 3083
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3084 CTGGCCTACCCAATTTTAATTTGTACTGAGCTTTAATTTTCTATTTGTGCTCAGGTTTAATTTCCTCCTGGGAT 3157
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3158 CTGCTTCCCAGTGCTGTACTCTGTATCTTTGCTTTCTTGTGTGAACATTGTGACCGATTTTCCCTGTTCTTCAC 3231
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3232 GTGGGACACATTCTCCCTGCTCTGTCTGTCTCTGTCCCTGTCTCTCTTTCTGTCTTTCTCTCTCACTGTGTGTC 3305
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3306 TCTCTGTCTCTCTCTCTCTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAAT 3379
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3380 GGCACAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGCAGC 3453
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3454 TGGGATTACAGGCATGCACCACCACACACGGCTAATTTTTTGTATTTTTGTTAGAGACGGGGGGCTCTCCATGT 3527
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3528 TGCTCAGGCTGGTCTTGAACTCCCGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTCCTGGGATTACAG 3601
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3602 GCATGAGCCACTGCGTCCAGCCGTCTTTGTCTCTTTTTCTACATCTCTGTCTTTCTTCTCTGGTTGTTTTTCAA 3675
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3676 CCATCAGCTGGGTGTTTTCTCCCATAACGTCTTGTTTGTTTGACTATGAGGTTGACAGGTGGGTACATGAACTC 3749
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3750 TATAGCAGAAGGTGGACAGTCTGCACATAGCAGAGGATGGGTGAATTTTTCTACCCCTTGCAGAGCACAGGAGA 3823
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3824 GCTGAGCAGATGCCAGTGTCTGCTCCAGTGTAAGGAAGTCCAGGAAGTTCAGGTGGTGAGGTCACAGTGGAAAG 3897
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3898 CAGGACAGATAGAGTTTAGGGGAAATTAAGCAAAAATACCACACTGTTATTTCTTGACATATTAGTGGAAAGAG 3971
Query 457 -------------------------------------------------------------------------- 456
Sbjct 3972 GAAGGGCCCAGAGAGAAGACAGAAAATTAGATGCAGGGGCTTGTTTTTTCTCTTGACTTGCCAACCCGCCCAAC 4045
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4046 GCAGGGGCCAGAACTCAGGGTGGTGAGATCTGGGAACATTGCTGTGCGGAGAAGATGTCCCTCCTGCTGCACGG 4119
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4120 GCCCCCAAGCACCACCTGGGGGAAGAGCCATGTTTAATTCACCTGGCAGTGCAGTGTGGCCAGGCAGAGAGGGA 4193
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4194 GGGCCTACCCTGTGCTTATGATCCCACCCCAGTTCCCCTGGGGTGTGCCCTGGCGGTGAACACCAGGAGGCTGC 4267
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4268 AGTGGGGCCCAACGTGAAAGGGAGGAGCAGCCTCACCGGGGCCAGATGGGGCAGCAGCAGATATTCACAGATGT 4341
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4342 CCCTGTGAGTAACCAGGGCAGAGGCCAGGGGTCTGGCCTTCCCTTTCTTGGAGCCCTGGGCCAGCTGGGCAAGG 4415
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4416 CGTTGAGAGAAAGATTACCCGGTGACCTTTATCAAAGCAGAGTAAGGAGGGCTTTATTCAGAACCATCACTGTA 4489
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4490 GGTACCAGGACCCCAGCGGTGGGATTTTGTAGTAGGGGAAAGAAAATGGGCTCGACGTTGAATACAGCATGAAC 4563
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4564 AAGTGAGAATGTTTGTTATACAAACTATAGGGTGGACTTTTTTTTTCTTTTTTTTAACTTTTTTTTACCTTTTA 4637
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4638 GTGTAAAACTGAACATAGAAAATAAATTCATGAAGAAGGGATATTTTCTGAGGGTGTCCAGGGCTGCCCAACAC 4711
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4712 CTCGTCTACCTTCTCTGTCATAGCCCCATTTAAAACACTCTCTCTGGATGAATACACCAAACCTCACAGTCTTT 4785
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4786 GCTCTCTTGCTAGGAAGAGGAGCAAGAGCGTGTTTCACTCTTGGCTCCTGCTTACACACCTGCTGTCCAATGGA 4859
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4860 AACTACTACTTAAGACATTTAAAAATAGTTGTGGTGATAGCATGTTGTGTTTTGGTTGGTGATGCCAGTTAGTC 4933
Query 457 -------------------------------------------------------------------------- 456
Sbjct 4934 TCTGAAAACTTTCTGTGATGAGTGTAAAATTCTACACCTTAATCTCCTTTCTTGTAGGATCTGGGAAGCAGTAT 5007
Query 457 -------------------------------------------------------------------------- 456
Sbjct 5008 GCACTTGATTGCACCAAAGATTTTACGTTCATAGAAAATTTCTGGCATCTGTGTGAAGAAAGTAAACTATATCT 5081
Query 457 ----------------------------------- 456
Sbjct 5082 TCCATTTAGACAAATAAAATATCTTTTTGATAAAA 5116
