Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00924
Subject:
NR_110280.3
Aligned Length:
5215
Identities:
319
Gaps:
4858

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTTGCTGTGGAAGCCCCATAGGCAGGAGGCCCCCGGGCAGCACATCCTGTCTGCTTGTGTCTGCTGCAGAGTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTGTCCTTGCATTGGTGCGCCTCAGGCCAGGCTGCACTGCTGGGACCTGGGCCATGTCTCCCCACCCCACCGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTCCTGGGCCTAGCAAGAAGGATTACATGGAGACAGTGATGTCGAGGAGGGTTGGCTTGGTCGTTATGAAATGC  222

Query    1  ---ATG-------TCTCCA------CACCT-----------------------------CACTG-------CTC  22
               |||       .|||||      |.|||                             |||||       .||
Sbjct  223  TGAATGCCCCCCAGCTCCATCGAGCCCCCTTTTGACAGCAGCCCCGTAAGGAGACTGGGCACTGGGCATTTTTC  296

Query   23  TC-CTGGGCCT--------AGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGGGGCCCTTCCCAGACCC  87
            || |||||.||        ||||||||||||||||||||||||||||||||||||||..|..||.|||||||||
Sbjct  297  TCACTGGGGCTTCTCTTCCAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCC  370

Query   88  TCCATCTCGGCTGAGCCAGGCACTGTGATCTCCCCGGGGAGCCATGTGACTTTCATGTGCCGGGGCCCGGTTGG  161
            |||||||||||||||||||||||.||||||.|||.|||||||||||||||||||.|||||||||||||||||||
Sbjct  371  TCCATCTCGGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGG  444

Query  162  GGTTCAAACATTCCGCCTGGAGAGGGAGGATAGAGCCAAGTACAAAGATAGTTATAATGTGTTTCGACTTGGTC  235
            |||||||||||||||||||||||||||...||||.|||..|||||.||||.|.|..||||||.||.|..|.|||
Sbjct  445  GGTTCAAACATTCCGCCTGGAGAGGGACAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTC  518

Query  236  CATCTGAGTCAGAGGCCAGATTCCACATTGACTCAGTAAGTGAAGGAAATGCCGGGCTTTATCGCTGCCTCTAT  309
            ||||||||||||||||||||||||.||||||||||                                       
Sbjct  519  CATCTGAGTCAGAGGCCAGATTCCGCATTGACTCA---------------------------------------  553

Query  310  TATAAGCCCCCTGGATGGTCTGAGCACAGTGACTTCCTGGAGCTGCTGGTGAAAGAAAGCTCTGGAGGCCCGGA  383
                                                                   |||||||||||||||||||
Sbjct  554  -------------------------------------------------------AAAGCTCTGGAGGCCCGGA  572

Query  384  CTCCCCGGACACAGAGCCCGGCTCCTCAGCTGGGACTGTGCCAGG-----CA-CTGAAGCCTCCGGATT-----  446
            ||||||||||||||||||||||||||||||| ||.|.||..||||     || |||.||    .|||||     
Sbjct  573  CTCCCCGGACACAGAGCCCGGCTCCTCAGCT-GGTCAGTAGCAGGGCCCTCAGCTGGAG----GGGATTACAGG  641

Query  447  --------TGATGC---------------ACCA-----------------------------------------  456
                    ||.|||               .|||                                         
Sbjct  642  GGAATCTGTGCTGCGGATGCTGTTCCGGGTCCAGCCCTCTGCCCTGGGCTTGGAGTCAAGGTCTAGGGAGGCCA  715

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct  716  CGGGAAGGCACCGACACCCACCAAGCTCTGGGAGGTCGCTAATGCTCACAGAGACCATAGCAGCAATGGACCCA  789

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct  790  CGCAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCTTCCCAAGGCCTGAAAGCTGAGCATCTGTAT  863

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct  864  ATTCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCTCCTGGTCCTCTTCTGCCTCCATCGCCAGAA  937

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct  938  TCAGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGAAGCCACAGCAGAGGCCTGACCTGGCTGTTG  1011

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1012  ATGTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTTCCTGAGAAGGACAGAGAGACGGACACCTCG  1085

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1086  GCCCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCTGGACCACTGGGCCCTCACACAGAGGACAGC  1159

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1160  CCGGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCATCACGTATGCAGCCGTTGCCAGACACTGAC  1233

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1234  CCCATACCCACCTGGCCTCTGCACCTGAGGGTAGAAAGTCACTCTAGGAAAAGCCTGAAGCAGCCATTTGGAAG  1307

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1308  GCTTCCTGTTGGATTCCTCTTCATCTAGAAAGCCAGCCAGGCAGCTGTCCTGGAGACAAGAGCTGGAGACTGGA  1381

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1382  GGTTTCTAACCAGCATCCAGAAGGTTCGTTAGCCAGGTGGTCCCTTCTACAATCGAGCAGCTCCTTGGACAGAC  1455

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1456  TGTTTCTCAGTTATTTCCAGAGACCCAGCTACAGTTCCCTGGCTGTTTCTAGAGACCCAGCTTTATTCACCTGA  1529

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1530  CTGTTTCCAGAGACCCAGCTAAAGTCACCTGCCTGTTCTAAAGGCCCAGCTACAGCCAATCAGCCGATTTCCTG  1603

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1604  AGCAGTGATGCCACCTCCAAGCTTGTCCTAGGTGTCTGCTGTGAACCTCCAGTGACCCCAGAGACTTTGCTGTA  1677

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1678  ATTATCTGCCCTGCTGACCCTAAAGACCTTCCTAGAAGTCAAGAGCTAGCCTTGAGACTGTGCTATACACACAC  1751

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1752  AGCTGAGAGCCAAGCCCAGTTCTCTGGGTTGTGCTTTACTCCACGCATCAATAAATAATTTTGAAGGCCTCACA  1825

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1826  TCTGGCAGCCCCAGGCCTGGTCCTGGGTGCATAGGTCTCTCGGACCCACTCTCTGCCTTCACAGTTGTTCAAAG  1899

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1900  CTGAGTGAGGGAAACAGGACTTACGAAAACGTGTCAGCGTTTTCTTTTTAAAATTTAATTGATCAGGATTGTAC  1973

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1974  GTATTCAAGGTGTAAAATGTGATAATTTGTCGTACACGTACATTGTGCAATGACAGTCACAATCAATTCCTCAG  2047

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2048  CGCACCCATCGCCACAGATACGATACATTAGATATTCTGAACTTGCTCATCTTAGGACTTCACATTGGTGTCAG  2121

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2122  TGTTTTCTGACAAATCACGTGTATCAGGAATGAATGAGGGAGGTGTGGCTGGGTGAAGGCAGAGAGCCGACCCT  2195

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2196  ACAGGTCCACATCTGCACATACATGCACAGGAATGCATGCTCTCACACACATGCATACACACACGCACACACAC  2269

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2270  AGACATGCACATACACTCACACGCCCCAGGAAATCCAAGGAATCACTGAGCCTGCTGTTGGTTGAGGCATTTCT  2343

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2344  GAGTATCCACCCTACCTGTAGGGTCAGATGTACTGATTGACACAGAAAATTACCCTATGTACCACTAGGAGGCG  2417

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2418  GCAGAATCTCATTTGGGTTAATCTGTGTTTGTCTTTAAAAAACAAAAACAGGCCGGGCATGGAGGCTCACGCCT  2491

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2492  GTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC  2565

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2566  GGTGAAACCCCATCTCTACTAAAAATACAAAAAAATTAGCCGGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTA  2639

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2640  CTCGGGAGGCTGAGGGAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGGTGGTGCCACTG  2713

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2714  CACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAGAAAAGAAAAGAAAAGAAAGATTTTTAAGAATTC  2787

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2788  AGCAAAAACTCAGCCAGCTCTTTCTATGGGGCAGTTGCTAATTTAGTTCTAGGCAAACGTGGACACATTAAATT  2861

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2862  CTCCTACAAACCCTCCACAGCGTGCTCTATTATTTTCCTCATTTATAAAAACAGAAACTATGGACCGAGACATG  2935

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2936  AAGTAACCTGTCCAAGGTCGGCCAAGTCTCAGAGACAGGGGCTTCAGACCCACCTGAGGCTCCTGACTCCACAT  3009

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3010  TATGAACCCCGGGATGGGCTGCAGCTCGGTCTGCTGGGAGGTTTCTGTGCTGGTTCAAAGAGGGTGGTACCTGA  3083

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3084  CTGGCCTACCCAATTTTAATTTGTACTGAGCTTTAATTTTCTATTTGTGCTCAGGTTTAATTTCCTCCTGGGAT  3157

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3158  CTGCTTCCCAGTGCTGTACTCTGTATCTTTGCTTTCTTGTGTGAACATTGTGACCGATTTTCCCTGTTCTTCAC  3231

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3232  GTGGGACACATTCTCCCTGCTCTGTCTGTCTCTGTCCCTGTCTCTCTTTCTGTCTTTCTCTCTCACTGTGTGTC  3305

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3306  TCTCTGTCTCTCTCTCTCTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAAT  3379

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3380  GGCACAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGCAGC  3453

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3454  TGGGATTACAGGCATGCACCACCACACACGGCTAATTTTTTGTATTTTTGTTAGAGACGGGGGGCTCTCCATGT  3527

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3528  TGCTCAGGCTGGTCTTGAACTCCCGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTCCTGGGATTACAG  3601

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3602  GCATGAGCCACTGCGTCCAGCCGTCTTTGTCTCTTTTTCTACATCTCTGTCTTTCTTCTCTGGTTGTTTTTCAA  3675

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3676  CCATCAGCTGGGTGTTTTCTCCCATAACGTCTTGTTTGTTTGACTATGAGGTTGACAGGTGGGTACATGAACTC  3749

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3750  TATAGCAGAAGGTGGACAGTCTGCACATAGCAGAGGATGGGTGAATTTTTCTACCCCTTGCAGAGCACAGGAGA  3823

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3824  GCTGAGCAGATGCCAGTGTCTGCTCCAGTGTAAGGAAGTCCAGGAAGTTCAGGTGGTGAGGTCACAGTGGAAAG  3897

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3898  CAGGACAGATAGAGTTTAGGGGAAATTAAGCAAAAATACCACACTGTTATTTCTTGACATATTAGTGGAAAGAG  3971

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3972  GAAGGGCCCAGAGAGAAGACAGAAAATTAGATGCAGGGGCTTGTTTTTTCTCTTGACTTGCCAACCCGCCCAAC  4045

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4046  GCAGGGGCCAGAACTCAGGGTGGTGAGATCTGGGAACATTGCTGTGCGGAGAAGATGTCCCTCCTGCTGCACGG  4119

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4120  GCCCCCAAGCACCACCTGGGGGAAGAGCCATGTTTAATTCACCTGGCAGTGCAGTGTGGCCAGGCAGAGAGGGA  4193

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4194  GGGCCTACCCTGTGCTTATGATCCCACCCCAGTTCCCCTGGGGTGTGCCCTGGCGGTGAACACCAGGAGGCTGC  4267

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4268  AGTGGGGCCCAACGTGAAAGGGAGGAGCAGCCTCACCGGGGCCAGATGGGGCAGCAGCAGATATTCACAGATGT  4341

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4342  CCCTGTGAGTAACCAGGGCAGAGGCCAGGGGTCTGGCCTTCCCTTTCTTGGAGCCCTGGGCCAGCTGGGCAAGG  4415

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4416  CGTTGAGAGAAAGATTACCCGGTGACCTTTATCAAAGCAGAGTAAGGAGGGCTTTATTCAGAACCATCACTGTA  4489

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4490  GGTACCAGGACCCCAGCGGTGGGATTTTGTAGTAGGGGAAAGAAAATGGGCTCGACGTTGAATACAGCATGAAC  4563

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4564  AAGTGAGAATGTTTGTTATACAAACTATAGGGTGGACTTTTTTTTTCTTTTTTTTAACTTTTTTTTACCTTTTA  4637

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4638  GTGTAAAACTGAACATAGAAAATAAATTCATGAAGAAGGGATATTTTCTGAGGGTGTCCAGGGCTGCCCAACAC  4711

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4712  CTCGTCTACCTTCTCTGTCATAGCCCCATTTAAAACACTCTCTCTGGATGAATACACCAAACCTCACAGTCTTT  4785

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4786  GCTCTCTTGCTAGGAAGAGGAGCAAGAGCGTGTTTCACTCTTGGCTCCTGCTTACACACCTGCTGTCCAATGGA  4859

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4860  AACTACTACTTAAGACATTTAAAAATAGTTGTGGTGATAGCATGTTGTGTTTTGGTTGGTGATGCCAGTTAGTC  4933

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4934  TCTGAAAACTTTCTGTGATGAGTGTAAAATTCTACACCTTAATCTCCTTTCTTGTAGGATCTGGGAAGCAGTAT  5007

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 5008  GCACTTGATTGCACCAAAGATTTTACGTTCATAGAAAATTTCTGGCATCTGTGTGAAGAAAGTAAACTATATCT  5081

Query  457  -----------------------------------  456
                                               
Sbjct 5082  TCCATTTAGACAAATAAAATATCTTTTTGATAAAA  5116

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