Construct: ORF ccsbBroadEn_00924
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006729.1_s300c1, BRDN0000397593
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LAIR2 (3904)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3904 | LAIR2 | leukocyte associated immuno... | NM_002288.6 | 100% | 100% | |
| 2 | human | 3904 | LAIR2 | leukocyte associated immuno... | XM_011526961.2 | 92.1% | 92.1% | 33_34ins36 |
| 3 | human | 3904 | LAIR2 | leukocyte associated immuno... | NM_021270.5 | 88.8% | 88.8% | 363_364ins51 |
| 4 | human | 3903 | LAIR1 | leukocyte associated immuno... | XM_017026803.2 | 74% | 67.7% | (many diffs) |
| 5 | human | 3903 | LAIR1 | leukocyte associated immuno... | NM_021706.5 | 48.4% | 36.4% | (many diffs) |
| 6 | human | 3903 | LAIR1 | leukocyte associated immuno... | NM_001289023.3 | 48.2% | 36.4% | (many diffs) |
| 7 | human | 3903 | LAIR1 | leukocyte associated immuno... | NM_002287.6 | 46.7% | 41.1% | (many diffs) |
| 8 | human | 3903 | LAIR1 | leukocyte associated immuno... | NM_001289025.3 | 46.6% | 41.1% | (many diffs) |
| 9 | human | 3903 | LAIR1 | leukocyte associated immuno... | NM_001289026.2 | 43% | 37.6% | (many diffs) |
| 10 | human | 3903 | LAIR1 | leukocyte associated immuno... | NM_001289027.2 | 39.5% | 33.4% | (many diffs) |
| 11 | human | 3903 | LAIR1 | leukocyte associated immuno... | NR_110279.3 | 6.5% | (many diffs) | |
| 12 | human | 3903 | LAIR1 | leukocyte associated immuno... | NR_110280.3 | 6.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 522
- ORF length:
- 456
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TCCACACCTC ACTGCTCTCC TGGGCCTAGT GCTCTGCCTG GCCCAGACCA 121 TCCACACGCA GGAGGGGGCC CTTCCCAGAC CCTCCATCTC GGCTGAGCCA GGCACTGTGA 181 TCTCCCCGGG GAGCCATGTG ACTTTCATGT GCCGGGGCCC GGTTGGGGTT CAAACATTCC 241 GCCTGGAGAG GGAGGATAGA GCCAAGTACA AAGATAGTTA TAATGTGTTT CGACTTGGTC 301 CATCTGAGTC AGAGGCCAGA TTCCACATTG ACTCAGTAAG TGAAGGAAAT GCCGGGCTTT 361 ATCGCTGCCT CTATTATAAG CCCCCTGGAT GGTCTGAGCA CAGTGACTTC CTGGAGCTGC 421 TGGTGAAAGA AAGCTCTGGA GGCCCGGACT CCCCGGACAC AGAGCCCGGC TCCTCAGCTG 481 GGACTGTGCC AGGCACTGAA GCCTCCGGAT TTGATGCACC ATGCCCAACT TTCTTGTACA 541 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac