Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_01314
- Subject:
- XR_002956469.1
- Aligned Length:
- 3484
- Identities:
- 1298
- Gaps:
- 2185
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAACACGGAGCAAAAAGGCACTCGTCACGGCCCCATACGGCCCCGGGGCTAGTCGCCAGGGTCAAGGGTAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGAGCCCAGGGTTGCCGAGGCGGAGGACTGAGGCAGGGGCAGCTGAGGTAATCAGTCCAAAAACCAGCGTGCCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGCGTTTCCCCAGGGCTCTGTCCGGACTCTGAAGCACTGCATAAAGGGGTCTGTCTGAGCCCAATTTACTTCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGTGGGGAAGGGAAAGGGAAGACACCACCGGAAGCAAGGAAGGTGCTGTGTAATCATTAAGGAGCGGAGGCTTT 296
Query 1 -------------ATGCCGGATTACCTCGGTGCCGATCAGCGGAAGACCAAAGAGGATGAGAAGGACGACAAGC 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGGAGCTGCTAAAATGCCGGATTACCTCGGTGCCGATCAGCGGAAGACCAAAGAGGATGAGAAGGACGACAAGC 370
Query 62 CCATCCGAGCTCTGGATGAGGGGGATATTGCCTTGTTGAAAACTTATGGTCAGAGCACTTACTCTAGGCAGATC 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCATCCGAGCTCTGGATGAGGGGGATATTGCCTTGTTGAAAACTTATGGTCAGAGCACTTACTCTAGGCAGATC 444
Query 136 AAGCAAGTTGAAGATGACATTCAGCAACTTCTCAAGAAAATTAATGAGCTCACTGGTATTAAAGAATCTGACAC 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGCAAGTTGAAGATGACATTCAGCAACTTCTCAAGAAAATTAATGAGCTCACTGGTATTAAAGAATCTGACAC 518
Query 210 TGGCCTGGCCCCACCAGCACTCTGGGATTTGGCTGCAGATAAGCAGACACTCCAGAGTGAACAGCCTTTACAGG 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGGCCTGGCCCCACCAGCACTCTGGGATTTGGCTGCAGATAAGCAGACACTCCAGAGTGAACAGCCTTTACAGG 592
Query 284 TTGCCAGGTGTACAAAGATAATCAATGCTGATTCGGAGGACCCAAAATACATTATCAACGTAAAGCAGTTTGCC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTGCCAGGTGTACAAAGATAATCAATGCTGATTCGGAGGACCCAAAATACATTATCAACGTAAAGCAGTTTGCC 666
Query 358 AAGTTTGTGGTGGACCTTAGTGATCAGGTGGCACCTACTGACATTGAAGAAGGGATGAGAGTGG---------- 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGTTTGTGGTGGACCTTAGTGATCAGGTGGCACCTACTGACATTGAAGAAGGGATGAGAGTGGGGTAAGATTT 740
Query 422 -------------------------------------------------------------------------- 421
Sbjct 741 CTATTTACAATAAATACTTTTCTTTCACTAAGGATACTGTCTCACATTCATATCCTTGGCTTTGTAGTGAATAA 814
Query 422 -------------------------------------------------------------------------- 421
Sbjct 815 ATGGACTGAGTTCCTTGGAATACCAAAGGATGATCTAGTAATGTACTATAGTTGAAAATTCTGTCTTCTGCATC 888
Query 422 -------------------------------------------------------------------------- 421
Sbjct 889 TGCTTCCTAACTTCCCATCGGCTTCGCTGACTCCCCTACTCCCACTGTTGTTTATTATGAATGGCTTCAAATTT 962
Query 422 -------------------------------------------------------------------------- 421
Sbjct 963 CAGAGTTGAGGTTACCAGTCCATTTAAGGTAACATGGTATAGGTTGGGGGAGTACTTGCTTTAGGATAGTTGTG 1036
Query 422 -------------------------------------------------------------------------- 421
Sbjct 1037 ATGCTAAGTGTGTTAATGTCTATAGAATACATAACAACTCACTTAGTAAATTAAAAAAAAATCTCCCCTCCCTC 1110
Query 422 -------------------------------------------------------------------------- 421
Sbjct 1111 CTCAAAGGTTTGATTGCTGTTGGATAGGTTGTTTGCGACATTAGACATGTAGTTTAGTATCCTCAGATTTCATG 1184
Query 422 -------------------------------------------------------------------------- 421
Sbjct 1185 CTCTCTTTATTTCTCTTTATATAATTAGGGACTCTGTCTCTCTCTTGTTTTCTTAAAGTATGGTTTTGGGGATA 1258
Query 422 ---------------------------------------------------------------------GCGTG 426
|||||
Sbjct 1259 AAGGACTAAACATAAAAGCACTTTGAAAGCTTAAAGAATGTATTAATGACTATCTTTTTTACTTCCTTAGCGTG 1332
Query 427 GATAGAAATAAATATCAAATTCACATTCCATTGCCTCCTAAGATTGACCCAACAGTTACCATGATGC------- 493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GATAGAAATAAATATCAAATTCACATTCCATTGCCTCCTAAGATTGACCCAACAGTTACCATGATGCAGGTAAG 1406
Query 494 -------------------------------------------------------------------------- 493
Sbjct 1407 AAACTATGGGAGGGAAAAGGAAGGCTATGTCTTTTTTTTTTTTTTTTTTTGAGGCGGAGTTTCACTCTTGTCCA 1480
Query 494 -------------------------------------------------------------------------- 493
Sbjct 1481 GGCTGGAGTAGAATGGTGTGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCA 1554
Query 494 -------------------------------------------------------------------------- 493
Sbjct 1555 GCCTCCCGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGT 1628
Query 494 -------------------------------------------------------------------------- 493
Sbjct 1629 GTTTCACCATGTTGGCCAGACTGGTTTCGAACTCATGACCTCAAGTGTTTGGCCTGCCTCAGCCTCCCAAAGTG 1702
Query 494 -------------------------------------------------------------------------- 493
Sbjct 1703 CTGGGATTCCAGGCGTGAGCCACTGAGCCCGGCAGTATTTTATATATATATTTTTTGAGACAGAGTCTCAGCCT 1776
Query 494 -------------------------------------------------------------------------- 493
Sbjct 1777 GTCTTTATTTTACTAGTTTGTTTTTCATTCATTAGTGTCATAACAAGTTAATACAGCAAGTAGTTCCAGGGCAC 1850
Query 494 -------------------------------------------------------------------------- 493
Sbjct 1851 TGGGCAATGTATTCAATTTTTATTAAAATTCTCACTTGTGAGTTTTTCTTTTAAGGTATTAGGTCTATTCTATT 1924
Query 494 ------------------------------------------------------------AGGTGGAAGAGAAA 507
||||||||||||||
Sbjct 1925 GAATTTGGACAGTATCCAAAAAGCCTGTGACTGTATGTTGTACATTTCTGTCCCTCTCTTAGGTGGAAGAGAAA 1998
Query 508 CCTGATGTCACATACAGTGATGTTGGTGGCTGTAAGGAACAGATTGAGAAACTGCGAGAAGTAGTTGAAACCCC 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CCTGATGTCACATACAGTGATGTTGGTGGCTGTAAGGAACAGATTGAGAAACTGCGAGAAGTAGTTGAAACCCC 2072
Query 582 ATTACTTCATCCAGAGAGGTTTGTGAACCTTGGCATTGAGCCTCCCAAGGGCGTGCTGCTCTTTGGTCCACCCG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 ATTACTTCATCCAGAGAGGTTTGTGAACCTTGGCATTGAGCCTCCCAAGGGCGTGCTGCTCTTTGGTCCACCCG 2146
Query 656 GTACAGGCAAGACACTCTGTGCGCGGGCAGTTGCTAATCGGACTGATGCGTGCTTCATTCGAGTTATTGGATCT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 GTACAGGCAAGACACTCTGTGCGCGGGCAGTTGCTAATCGGACTGATGCGTGCTTCATTCGAGTTATTGGATCT 2220
Query 730 GAGCTTGTACAGAAATACGTCGGTGAGGGGGCTCGAATGGTTCGTGAACTCTTTGAAATGGCCAGAACAAAAAA 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GAGCTTGTACAGAAATACGTCGGTGAGGGGGCTCGAATGGTTCGTGAACTCTTTGAAATGGCCAGAACAAAAAA 2294
Query 804 AGCCTGCCTTATCTTCTTTGATGAAATTGATGCTATTGGAGGGGCTCGTTTTGATGATGGTGCTGGAGGTGACA 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 AGCCTGCCTTATCTTCTTTGATGAAATTGATGCTATTGGAGGGGCTCGTTTTGATGATGGTGCTGGAGGTGACA 2368
Query 878 ATGAAGTGCAGAGAACAATGTTGGAACTGATCAATCAGCTTGATGGTTTTGATCCTCGAGGCAATATTAAAGTG 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 2369 ATGAAGTGCAGAGAACAATGTTGGAACTGATCAATCAGCTTGATGGTTTTGATCCTAGAGGCAATATTAAAGTG 2442
Query 952 CTGATGGCCACTAACAGACCTGATACTTTGGATCCAGCACTGATGAGGCCAGGGAGATTGGATAGAAAAATTGA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CTGATGGCCACTAACAGACCTGATACTTTGGATCCAGCACTGATGAGGCCAGGGAGATTGGATAGAAAAATTGA 2516
Query 1026 ATTTAGCTTGCCCGATCTAGAGGGTCGGACCCACATATTTAAGATTCACGCTCGTTCAATGAGTGTTGAAAGAG 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 ATTTAGCTTGCCCGATCTAGAGGGTCGGACCCACATATTTAAGATTCACGCTCGTTCAATGAGTGTTGAAAGAG 2590
Query 1100 ATATCAGATTTGAACTGTTAGCACGACTGTGTCCAAATAGCACTGGTGCTGAGATTAGAAGCGTCTGCACAGAG 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 ATATCAGATTTGAACTGTTAGCACGACTGTGTCCAAATAGCACTGGTGCTGAGATTAGAAGCGTCTGCACAGAG 2664
Query 1174 GCTGGTATGTTTGCCATCAGAGCACGGCGAAAAATTGCTACCGAGAAGGATTTCTTGGAAGCTGTAAATAAGGT 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 GCTGGTATGTTTGCCATCAGAGCACGGCGAAAAATTGCTACCGAGAAGGATTTCTTGGAAGCTGTAAATAAGGT 2738
Query 1248 CATTAAGTCTTATGCCAAATTCAGTGCTACTCCTCGTTACATGACATACAAC---------------------- 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 CATTAAGTCTTATGCCAAATTCAGTGCTACTCCTCGTTACATGACATACAACTGAACCCTGAAGGCTTTCAAGT 2812
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2813 GAAAACTTTAAATTGGAATCCTAACCTTATATAGACTTGTTAATAACCAATTCATAAACAAATAAATGGCTTCA 2886
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2887 AAATTGTATGCTTTTTTCCATATCTCTTCTTGTAATATAATAAAAGGTGATTTCTAATGTTATTAGGCAGAAAA 2960
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2961 GCTTGTTAGAATATATTTTGACTATTTTTTTGACCCACACCCGTTTAAGGATTTCACATCATACAAAGCGCTTG 3034
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3035 CTTAGATGGCTTCTATCCTAGGCATATGCTGGCCGGGTGCTCTACATATAAATTCTCATTGTATCCTCCCATCT 3108
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3109 GTCCACTGAGGAAGATTATCAAATGGATCTTCATCCAATGGATGCATAAACTTTCCTACTTACTTGTAGTGGCA 3182
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3183 AAGCTGGCTTTCAAGTACAAGTTTGTTGGCTCCATTACCTATGCTCCTATTATCCGCTTCTGTCCCGCAACAAA 3256
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3257 GTAGCTCACTTAGGCGTATGACCACATGCATTATGATAGTTTCCCACCACCATATTGAATAATAAAAGCTTTGG 3330
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3331 CCAAAGCTTTTTTAAAGTAGGAGAAACATTGGATGTATATGTTTTGCATTGCCATTTGATTTCAAATTAATCAG 3404
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3405 GAAGAATTAGTGATTTTAATGAGCAGTAAAGTGGTGCAATAAAGCAGAAAGAAAAATGTTCAGCCAGAAGTGAA 3478
Query 1300 ------ 1299
Sbjct 3479 AGACTA 3484
