Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_01608
- Subject:
- XR_001748856.1
- Aligned Length:
- 4464
- Identities:
- 2357
- Gaps:
- 2104
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAAGTTGTAGGCGGGGCGCGAGGTTCTAGTACCCGAGCTCATACTAGGGACGGGAAGTCGCGACCAGAGCCATT 74
Query 1 -------------------------------------ATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCC 37
|||||||||||||||||||||||||||||||||||||
Sbjct 75 GGAGGGCGCGGGGACTGCAACCCTAATCAGAGCCCAAATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCC 148
Query 38 CCTTTCAGGATCAGCTGCACCAGCTTTACTCGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTC 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCTTTCAGGATCAGCTGCACCAGCTTTACTCGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTC 222
Query 112 TGGATTGAAGACCAGAACTGGCAGGAAGCTGCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCA 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGGATTGAAGACCAGAACTGGCAGGAAGCTGCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCA 296
Query 186 CTTCTTGGATCAGCTGAACTATGAGTGTGGCCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATT 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTTCTTGGATCAGCTGAACTATGAGTGTGGCCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATT 370
Query 260 TGCGGAAATTCTGCCGGGACATTCAGCCCTTTTCCCAGGATCCTACCCAGTTGGCTGAGATGATCTTTAACCTC 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGCGGAAATTCTGCCGGGACATTCAGCCCTTTTCCCAGGATCCTACCCAGTTGGCTGAGATGATCTTTAACCTC 444
Query 334 CTTCTGGAAGAAAAAAGAATTTTGATCCAGGCTCAGAGGGCCCAATTGGAACAAGGAGAGCCAGTTCTCGAAAC 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTTCTGGAAGAAAAAAGAATTTTGATCCAGGCTCAGAGGGCCCAATTGGAACAAGGAGAGCCAGTTCTCGAAAC 518
Query 408 ACCTGTGGAGAGCCAGCAACATGAGATTGAATCCCGGATCCTGGATTTAAGGGCTATGATGGAGAAGCTGGTAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACCTGTGGAGAGCCAGCAACATGAGATTGAATCCCGGATCCTGGATTTAAGGGCTATGATGGAGAAGCTGGTAA 592
Query 482 AATCCATCAGCCAACTGAAAGACCAGCAGGATGTCTTCTGCTTCCGATATAAGATCCAGGCCAAAGGGAAGACA 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AATCCATCAGCCAACTGAAAGACCAGCAGGATGTCTTCTGCTTCCGATATAAGATCCAGGCCAAAGGGAAGACA 666
Query 556 CCCTCTCTGGACCCCCATCAGACCAAAGAGCAGAAGATTCTGCAGGAAACTCTCAATGAACTGGACAAAAGGAG 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCCTCTCTGGACCCCCATCAGACCAAAGAGCAGAAGATTCTGCAGGAAACTCTCAATGAACTGGACAAAAGGAG 740
Query 630 AAAGGAGGTGCTGGATGCCTCCAAAGCACTGCTAGGCCGATTAACTACCCTAATCGAGCTACTGCTGCCAAAGT 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAGGAGGTGCTGGATGCCTCCAAAGCACTGCTAGGCCGATTAACTACCCTAATCGAGCTACTGCTGCCAAAGT 814
Query 704 TGGAGGAGTGGAAGGCCCAGCAGCAAAAAGCCTGCATCAGAGCTCCCATTGACCACGGGTTGGAACAGCTGGAG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGGAGGAGTGGAAGGCCCAGCAGCAAAAAGCCTGCATCAGAGCTCCCATTGACCACGGGTTGGAACAGCTGGAG 888
Query 778 ACATGGTTCACAGCTGGAGCAAAGCTGTTGTTTCACCTGAGGCAGCTGCTGAAGGAGCTGAAGGGACTGAGTTG 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACATGGTTCACAGCTGGAGCAAAGCTGTTGTTTCACCTGAGGCAGCTGCTGAAGGAGCTGAAGGGACTGAGTTG 962
Query 852 CCTGGTTAGCTATCAGGATGACCCTCTGACCAAAGGGGTGGACCTACGCAACGCCCAGGTCACAGAGTTGCTAC 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCTGGTTAGCTATCAGGATGACCCTCTGACCAAAGGGGTGGACCTACGCAACGCCCAGGTCACAGAGTTGCTAC 1036
Query 926 AGCGTCTGCTCCACAGAGCCTTTGTGGTAGAAACCCAGCCCTGCATGCCCCAAACTCCCCATCGACCCCTCATC 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGCGTCTGCTCCACAGAGCCTTTGTGGTAGAAACCCAGCCCTGCATGCCCCAAACTCCCCATCGACCCCTCATC 1110
Query 1000 CTCAAGACTGGCAGCAAGTTCACCGTCCGAACAAGGCTGCTGGTGAGACTCCAGGAAGGCAATGAGTCACTGAC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTCAAGACTGGCAGCAAGTTCACCGTCCGAACAAGGCTGCTGGTGAGACTCCAGGAAGGCAATGAGTCACTGAC 1184
Query 1074 TGTGGAAGTCTCCATTGACAGGAATCCTCCTCAATTACAAGGCTTCCGGAAGTTCAACATTCTGACTTCAAACC 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGTGGAAGTCTCCATTGACAGGAATCCTCCTCAATTACAAGGCTTCCGGAAGTTCAACATTCTGACTTCAAACC 1258
Query 1148 AGAAAACTTTGACCCCCGAGAAGGGGCAGAGTCAGGGTTTGATTTGGGACTTTGGTTACCTGACTCTGGTGGAG 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGAAAACTTTGACCCCCGAGAAGGGGCAGAGTCAGGGTTTGATTTGGGACTTTGGTTACCTGACTCTGGTGGAG 1332
Query 1222 CAACGTTCAGGTGGTTCAGGAAAGGGCAGCAATAAGGGGCCACTAGGTGTGACAGAGGAACTGCACATCATCAG 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CAACGTTCAGGTGGTTCAGGAAAGGGCAGCAATAAGGGGCCACTAGGTGTGACAGAGGAACTGCACATCATCAG 1406
Query 1296 CTTCACGGTCAAATATACCTACCAGGGTCTGAAGCAGGAGCTGAAAACGGACACCCTCCCTGTGGTGATTATTT 1369
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1407 CTTCACGGTCAAATATACCTACCAGGGTCTGAAGCAGGAGCTGAAA---GAC-CCCT----------------- 1459
Query 1370 CCAACATGAACCAGCTCTCAATTGCCTGGGCTTCAGTTCTCTGGTTCAATTTGCTCAGCCCAAACCTTCAGAAC 1443
|||||| .|||| |||
Sbjct 1460 ----------------------------GGCTTC------------------CCTCA----------TCA---- 1473
Query 1444 CAGCAGTTCT-TCTCCAACCCCCCCAAGGCCCCCTGGAGCTTGCTGGGCCCTGCTCTCAGTTGGCAGTTCTCCT 1516
||| ||| .|||
Sbjct 1474 -------TCTGTCT-------------------GTGG------------------------------------- 1484
Query 1517 CCTATGTTGGCCGAGGCCTCAACTCAGACCAGCTGAGCATGCTGAGAAACAAGCTGTTC----GGGCAGAACTG 1586
|||| ||||.| |||||||||||
Sbjct 1485 -CTAT------------------------------------------------CTGTCCCACAGGGCAGAACTG 1509
Query 1587 TAGGACTGAGGATCCATTATTGTCCTGGGCTGACTTCACTAAGCGAGAGAGCCCTCCTGGCAAGTTACCATTCT 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 TAGGACTGAGGATCCATTATTGTCCTGGGCTGACTTCACTAAGCGAGAGAGCCCTCCTGGCAAGTTACCATTCT 1583
Query 1661 GGACATGGCTGGACAAAATTCTGGAGTTGGTACATGACCACCTGAAGGATCTCTGGAATGATGGACGCATCATG 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 GGACATGGCTGGACAAAATTCTGGAGTTGGTACATGACCACCTGAAGGATCTCTGGAATGATGGACGCATCATG 1657
Query 1735 GGCTTTGTGAGTCGGAGCCAGGAGCGCCGGCTGCTGAAGAAGACCATGTCTGGCACCTTTCTACTGCGCTTCAG 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 GGCTTTGTGAGTCGGAGCCAGGAGCGCCGGCTGCTGAAGAAGACCATGTCTGGCACCTTTCTACTGCGCTTCAG 1731
Query 1809 TGAATCGTCAGAAGGGGGCATTACCTGCTCCTGGGTGGAGCACCAGGATGATGACAAGGTGCTCATCTACTCTG 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 TGAATCGTCAGAAGGGGGCATTACCTGCTCCTGGGTGGAGCACCAGGATGATGACAAGGTGCTCATCTACTCTG 1805
Query 1883 TGCAACCGTACACGAAGGAGGTGCTGCAGTCACTCCCGCTGACTGAAATCATCCGCCATTACCAGTTGCTCACT 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 TGCAACCGTACACGAAGGAGGTGCTGCAGTCACTCCCGCTGACTGAAATCATCCGCCATTACCAGTTGCTCACT 1879
Query 1957 GAGGAGAATATACCTGAAAACCCACTGCGCTTCCTCTATCCCCGAATCCCCCGGGATGAAGCTTTTGGGTGCTA 2030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 GAGGAGAATATACCTGAAAACCCACTGCGCTTCCTCTATCCCCGAATCCCCCGGGATGAAGCTTTTGGGTGCTA 1953
Query 2031 CTACCAGGAGAAAGTTAATCTCCAGGAACGGAGGAAATACCTGAAACACAGGCTCATTGTGGTCTCTAATAGAC 2104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 CTACCAGGAGAAAGTTAATCTCCAGGAACGGAGGAAATACCTGAAACACAGGCTCATTGTGGTCTCTAATAGAC 2027
Query 2105 AGGTGGATGAACTGCAACAACCGCTGGAGCTTAAGCCAGAGCCAGAGCTGGAGTCATTAGAGCTGGAACTAGGG 2178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2028 AGGTGGATGAACTGCAACAACCGCTGGAGCTTAAGCCAGAGCCAGAGCTGGAGTCATTAGAGCTGGAACTAGGG 2101
Query 2179 CTGGTGCCAGAGCCAGAGCTCAGCCTGGACTTAGAGCCACTGCTGAAGGCAGGGCTGGATCTGGGGCCAGAGCT 2252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2102 CTGGTGCCAGAGCCAGAGCTCAGCCTGGACTTAGAGCCACTGCTGAAGGCAGGGCTGGATCTGGGGCCAGAGCT 2175
Query 2253 AGAGTCTGTGCTGGAGTCCACTCTGGAGCCTGTGATAGAGCCCACACTATGCATGGTATCACAAACAGTGCCAG 2326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2176 AGAGTCTGTGCTGGAGTCCACTCTGGAGCCTGTGATAGAGCCCACACTATGCATGGTATCACAAACAGTGCCAG 2249
Query 2327 AGCCAGACCAAGGACCTGTATCACAGCCAGTGCCAGAGCCAGATTTGCCCTGTGATCTGAGACATTTGAACACT 2400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2250 AGCCAGACCAAGGACCTGTATCACAGCCAGTGCCAGAGCCAGATTTGCCCTGTGATCTGAGACATTTGAACACT 2323
Query 2401 GAGCCAATGGAAATCTTCAGAAACTGTGTAAAGATTGAAGAAATCATGCCGAATGGTGACCCACTGTTGGCTGG 2474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2324 GAGCCAATGGAAATCTTCAGAAACTGTGTAAAGATTGAAGAAATCATGCCGAATGGTGACCCACTGTTGGCTGG 2397
Query 2475 CCAGAACACCGTGGATGAGGTTTACGTCTCCCGCCCCAGCCACTTCTACACTGATGGACCCTTGATGCCTTCTG 2548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 CCAGAACACCGTGGATGAGGTTTACGTCTCCCGCCCCAGCCACTTCTACACTGATGGACCCTTGATGCCTTCTG 2471
Query 2549 ACTTC--------------------------------------------------------------------- 2553
|||||
Sbjct 2472 ACTTCTAGGAACCACATTTCCTCTGTTCTTTTCATATCTCTTGCCCTTCCTACTCCTCATAGCATGATATTGTT 2545
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2546 CTCCAAGGATGGGAATCAGGCATGTGTCCCTTCCAAGCTGTGTTAACTGTTCAAACTCAGGCCTGTGTGACTCC 2619
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2620 ATTGGGGTGAGAGGTGAAAGCATAACATGGGTACAGAGGGGACAACAATGAATCAGAACAGATGCTGAGCCATA 2693
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2694 GGTCTAAATAGGATCCTGGAGGCTGCCTGCTGTGCTGGGAGGTATAGGGGTCCTGGGGGCAGGCCAGGGCAGTT 2767
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2768 GACAGGTACTTGGAGGGCTCAGGGCAGTGGCTTCTTTCCAGTATGGAAGGATTTCAACATTTTAATAGTTGGTT 2841
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2842 AGGCTAAACTGGTGCATACTGGCATTGGCCCTTGGTGGGGAGCACAGACACAGGATAGGACTCCATTTCTTTCT 2915
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2916 TCCATTCCTTCATGTCTAGGATAACTTGCTTTCTTCTTTCCTTTACTCCTGGCTCAAGCCCTGAATTTCTTCTT 2989
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2990 TTCCTGCAGGGGTTGAGAGCTTTCTGCCTTAGCCTACCATGTGAAACTCTACCCTGAAGAAAGGGATGGATAGG 3063
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3064 AAGTAGACCTCTTTTTCTTACCAGTCTCCTCCCCTACTCTGCCCCTAAGCTGGCTGTACCTGTTCCTCCCCCAT 3137
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3138 AAAATGATCCTGCCAATCTAATGTGAGTGTGAAGCTTTGCACACTAGTTTATGCTACCTAGTCTCCACTTTCTC 3211
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3212 AATGCTTAGGAGACAGATCACTCCTGGAGGCTGGGGATGGTAGGATTGCTGGGGATTTTTTTTTTTTTAAACAG 3285
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3286 GGTCTCACTCTGTTGCCCAGGCTAGAGTGCAATGGTGCAATCACAGCTCACTGCAGCCTCAACCTCCTGGGTTC 3359
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3360 AAGCAATCCTCCTACCTCAGCCTCCTGGGTAGCTAGCACCATGGCATGCGCCACCATGCCCTATTTTTTTTTTT 3433
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3434 TAAAGACAGGGTCTTGCTATATTGCCCAGGCTGGTCTTGAACTGGGCTCAAGTGATCCTCACGCCTTGGCCTCC 3507
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3508 CAAAGTGCTGGGATTATAGGCATGAGCCACTGTGCTTGGCCAGGATTTTTTTTTTTTTTTTTTTGAGATGGAGT 3581
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3582 TTCTCTCTTGTTGTCCAGGCTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACCTCCGCCTTCCGGGTTCAA 3655
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3656 GTGACTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGATCTGCACCACCATGCCCAGCTAATTTTGTAT 3729
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3730 TTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGTCCACC 3803
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3804 TCGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACTGTTCCCAGCAGGAATTTCTTTTTTATAGTATTGG 3877
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3878 ATAAAGTTTGGTGTTTTTACAGAGGAGAAGCAATGGGTCTTAGCTCTTTCTCTATTATGTTATCATCCTCCCTT 3951
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3952 TTTTGTACAATATGTTGTTTACCTGAAAGGAAGGTTTCTATTCGTTGGTTGTGGACCTGGACAAAGTCCAAGTC 4025
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 4026 TGTGGAACTTAAAACCTTGAAGGTCTGTCATAGGACTCTGGACAATCTCACACCTTAGCTATTCCCAGGGAACC 4099
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 4100 CCAGGGGGCAACTGACATTGCTCCAAGATGTTCTCCTGATGTAGCTTGAGATATAAAGGAAAGGCCCTGCACAG 4173
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 4174 GTGGCTGTTTCTTGTCTGTTATGTCAGAGGAACAGTCCTGTTCAGAAAGGGGCTCTTCTGAGCAGAAATGGCTA 4247
Query 2554 ------------------------ 2553
Sbjct 4248 ATAAACTTTGTGCTGATCTGGAAA 4271
