Construct: ORF ccsbBroadEn_01608
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005765.1_s300c1, BRDN0000390497
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STAT2 (6773)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6773 | STAT2 | signal transducer and activ... | NM_005419.4 | 100% | 100% | |
| 2 | human | 6773 | STAT2 | signal transducer and activ... | NM_198332.2 | 99.5% | 99.5% | 282_283insCAGCCCTTTTCC |
| 3 | human | 6773 | STAT2 | signal transducer and activ... | XM_011538697.2 | 99% | 99% | 1438_1461del |
| 4 | human | 6773 | STAT2 | signal transducer and activ... | XM_011538698.3 | 98.6% | 98.6% | 282_283insCAGCCCTTTTCC;1426_1449del |
| 5 | human | 6773 | STAT2 | signal transducer and activ... | XM_017019904.2 | 70.4% | 69.8% | (many diffs) |
| 6 | human | 6773 | STAT2 | signal transducer and activ... | XM_011538700.2 | 69.7% | 69.1% | (many diffs) |
| 7 | human | 6773 | STAT2 | signal transducer and activ... | XM_011538699.3 | 67.6% | 67.2% | (many diffs) |
| 8 | human | 6773 | STAT2 | signal transducer and activ... | XR_245953.3 | 58.1% | (many diffs) | |
| 9 | human | 6773 | STAT2 | signal transducer and activ... | XR_002957376.1 | 55% | (many diffs) | |
| 10 | human | 6773 | STAT2 | signal transducer and activ... | XR_002957375.1 | 54.9% | (many diffs) | |
| 11 | human | 6773 | STAT2 | signal transducer and activ... | XR_001748857.1 | 53.5% | (many diffs) | |
| 12 | human | 6773 | STAT2 | signal transducer and activ... | XR_001748858.2 | 52.8% | (many diffs) | |
| 13 | human | 6773 | STAT2 | signal transducer and activ... | XR_001748856.1 | 52.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2619
- ORF length:
- 2553
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GCAGTGGGAA ATGCTGCAGA ATCTTGACAG CCCCTTTCAG GATCAGCTGC 121 ACCAGCTTTA CTCGCACAGC CTCCTGCCTG TGGACATTCG ACAGTACTTG GCTGTCTGGA 181 TTGAAGACCA GAACTGGCAG GAAGCTGCAC TTGGGAGTGA TGATTCCAAG GCTACCATGC 241 TATTCTTCCA CTTCTTGGAT CAGCTGAACT ATGAGTGTGG CCGTTGCAGC CAGGACCCAG 301 AGTCCTTGTT GCTGCAGCAC AATTTGCGGA AATTCTGCCG GGACATTCAG CCCTTTTCCC 361 AGGATCCTAC CCAGTTGGCT GAGATGATCT TTAACCTCCT TCTGGAAGAA AAAAGAATTT 421 TGATCCAGGC TCAGAGGGCC CAATTGGAAC AAGGAGAGCC AGTTCTCGAA ACACCTGTGG 481 AGAGCCAGCA ACATGAGATT GAATCCCGGA TCCTGGATTT AAGGGCTATG ATGGAGAAGC 541 TGGTAAAATC CATCAGCCAA CTGAAAGACC AGCAGGATGT CTTCTGCTTC CGATATAAGA 601 TCCAGGCCAA AGGGAAGACA CCCTCTCTGG ACCCCCATCA GACCAAAGAG CAGAAGATTC 661 TGCAGGAAAC TCTCAATGAA CTGGACAAAA GGAGAAAGGA GGTGCTGGAT GCCTCCAAAG 721 CACTGCTAGG CCGATTAACT ACCCTAATCG AGCTACTGCT GCCAAAGTTG GAGGAGTGGA 781 AGGCCCAGCA GCAAAAAGCC TGCATCAGAG CTCCCATTGA CCACGGGTTG GAACAGCTGG 841 AGACATGGTT CACAGCTGGA GCAAAGCTGT TGTTTCACCT GAGGCAGCTG CTGAAGGAGC 901 TGAAGGGACT GAGTTGCCTG GTTAGCTATC AGGATGACCC TCTGACCAAA GGGGTGGACC 961 TACGCAACGC CCAGGTCACA GAGTTGCTAC AGCGTCTGCT CCACAGAGCC TTTGTGGTAG 1021 AAACCCAGCC CTGCATGCCC CAAACTCCCC ATCGACCCCT CATCCTCAAG ACTGGCAGCA 1081 AGTTCACCGT CCGAACAAGG CTGCTGGTGA GACTCCAGGA AGGCAATGAG TCACTGACTG 1141 TGGAAGTCTC CATTGACAGG AATCCTCCTC AATTACAAGG CTTCCGGAAG TTCAACATTC 1201 TGACTTCAAA CCAGAAAACT TTGACCCCCG AGAAGGGGCA GAGTCAGGGT TTGATTTGGG 1261 ACTTTGGTTA CCTGACTCTG GTGGAGCAAC GTTCAGGTGG TTCAGGAAAG GGCAGCAATA 1321 AGGGGCCACT AGGTGTGACA GAGGAACTGC ACATCATCAG CTTCACGGTC AAATATACCT 1381 ACCAGGGTCT GAAGCAGGAG CTGAAAACGG ACACCCTCCC TGTGGTGATT ATTTCCAACA 1441 TGAACCAGCT CTCAATTGCC TGGGCTTCAG TTCTCTGGTT CAATTTGCTC AGCCCAAACC 1501 TTCAGAACCA GCAGTTCTTC TCCAACCCCC CCAAGGCCCC CTGGAGCTTG CTGGGCCCTG 1561 CTCTCAGTTG GCAGTTCTCC TCCTATGTTG GCCGAGGCCT CAACTCAGAC CAGCTGAGCA 1621 TGCTGAGAAA CAAGCTGTTC GGGCAGAACT GTAGGACTGA GGATCCATTA TTGTCCTGGG 1681 CTGACTTCAC TAAGCGAGAG AGCCCTCCTG GCAAGTTACC ATTCTGGACA TGGCTGGACA 1741 AAATTCTGGA GTTGGTACAT GACCACCTGA AGGATCTCTG GAATGATGGA CGCATCATGG 1801 GCTTTGTGAG TCGGAGCCAG GAGCGCCGGC TGCTGAAGAA GACCATGTCT GGCACCTTTC 1861 TACTGCGCTT CAGTGAATCG TCAGAAGGGG GCATTACCTG CTCCTGGGTG GAGCACCAGG 1921 ATGATGACAA GGTGCTCATC TACTCTGTGC AACCGTACAC GAAGGAGGTG CTGCAGTCAC 1981 TCCCGCTGAC TGAAATCATC CGCCATTACC AGTTGCTCAC TGAGGAGAAT ATACCTGAAA 2041 ACCCACTGCG CTTCCTCTAT CCCCGAATCC CCCGGGATGA AGCTTTTGGG TGCTACTACC 2101 AGGAGAAAGT TAATCTCCAG GAACGGAGGA AATACCTGAA ACACAGGCTC ATTGTGGTCT 2161 CTAATAGACA GGTGGATGAA CTGCAACAAC CGCTGGAGCT TAAGCCAGAG CCAGAGCTGG 2221 AGTCATTAGA GCTGGAACTA GGGCTGGTGC CAGAGCCAGA GCTCAGCCTG GACTTAGAGC 2281 CACTGCTGAA GGCAGGGCTG GATCTGGGGC CAGAGCTAGA GTCTGTGCTG GAGTCCACTC 2341 TGGAGCCTGT GATAGAGCCC ACACTATGCA TGGTATCACA AACAGTGCCA GAGCCAGACC 2401 AAGGACCTGT ATCACAGCCA GTGCCAGAGC CAGATTTGCC CTGTGATCTG AGACATTTGA 2461 ACACTGAGCC AATGGAAATC TTCAGAAACT GTGTAAAGAT TGAAGAAATC ATGCCGAATG 2521 GTGACCCACT GTTGGCTGGC CAGAACACCG TGGATGAGGT TTACGTCTCC CGCCCCAGCC 2581 ACTTCTACAC TGATGGACCC TTGATGCCTT CTGACTTCTA CCCAACTTTC TTGTACAAAG 2641 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac