Construct: ORF ccsbBroadEn_01608

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005765.1_s300c1, BRDN0000390497
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STAT2 (6773)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6773 STAT2 signal transducer and activ... NM_005419.4 100% 100%
2 human 6773 STAT2 signal transducer and activ... NM_198332.2 99.5% 99.5% 282_283insCAGCCCTTTTCC
3 human 6773 STAT2 signal transducer and activ... XM_011538697.2 99% 99% 1438_1461del
4 human 6773 STAT2 signal transducer and activ... XM_011538698.3 98.6% 98.6% 282_283insCAGCCCTTTTCC;1426_1449del
5 human 6773 STAT2 signal transducer and activ... XM_017019904.2 70.4% 69.8% (many diffs)
6 human 6773 STAT2 signal transducer and activ... XM_011538700.2 69.7% 69.1% (many diffs)
7 human 6773 STAT2 signal transducer and activ... XM_011538699.3 67.6% 67.2% (many diffs)
8 human 6773 STAT2 signal transducer and activ... XR_245953.3 58.1% (many diffs)
9 human 6773 STAT2 signal transducer and activ... XR_002957376.1 55% (many diffs)
10 human 6773 STAT2 signal transducer and activ... XR_002957375.1 54.9% (many diffs)
11 human 6773 STAT2 signal transducer and activ... XR_001748857.1 53.5% (many diffs)
12 human 6773 STAT2 signal transducer and activ... XR_001748858.2 52.8% (many diffs)
13 human 6773 STAT2 signal transducer and activ... XR_001748856.1 52.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2619
ORF length:
2553
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GCAGTGGGAA ATGCTGCAGA ATCTTGACAG CCCCTTTCAG GATCAGCTGC
121ACCAGCTTTA CTCGCACAGC CTCCTGCCTG TGGACATTCG ACAGTACTTG GCTGTCTGGA
181TTGAAGACCA GAACTGGCAG GAAGCTGCAC TTGGGAGTGA TGATTCCAAG GCTACCATGC
241TATTCTTCCA CTTCTTGGAT CAGCTGAACT ATGAGTGTGG CCGTTGCAGC CAGGACCCAG
301AGTCCTTGTT GCTGCAGCAC AATTTGCGGA AATTCTGCCG GGACATTCAG CCCTTTTCCC
361AGGATCCTAC CCAGTTGGCT GAGATGATCT TTAACCTCCT TCTGGAAGAA AAAAGAATTT
421TGATCCAGGC TCAGAGGGCC CAATTGGAAC AAGGAGAGCC AGTTCTCGAA ACACCTGTGG
481AGAGCCAGCA ACATGAGATT GAATCCCGGA TCCTGGATTT AAGGGCTATG ATGGAGAAGC
541TGGTAAAATC CATCAGCCAA CTGAAAGACC AGCAGGATGT CTTCTGCTTC CGATATAAGA
601TCCAGGCCAA AGGGAAGACA CCCTCTCTGG ACCCCCATCA GACCAAAGAG CAGAAGATTC
661TGCAGGAAAC TCTCAATGAA CTGGACAAAA GGAGAAAGGA GGTGCTGGAT GCCTCCAAAG
721CACTGCTAGG CCGATTAACT ACCCTAATCG AGCTACTGCT GCCAAAGTTG GAGGAGTGGA
781AGGCCCAGCA GCAAAAAGCC TGCATCAGAG CTCCCATTGA CCACGGGTTG GAACAGCTGG
841AGACATGGTT CACAGCTGGA GCAAAGCTGT TGTTTCACCT GAGGCAGCTG CTGAAGGAGC
901TGAAGGGACT GAGTTGCCTG GTTAGCTATC AGGATGACCC TCTGACCAAA GGGGTGGACC
961TACGCAACGC CCAGGTCACA GAGTTGCTAC AGCGTCTGCT CCACAGAGCC TTTGTGGTAG
1021AAACCCAGCC CTGCATGCCC CAAACTCCCC ATCGACCCCT CATCCTCAAG ACTGGCAGCA
1081AGTTCACCGT CCGAACAAGG CTGCTGGTGA GACTCCAGGA AGGCAATGAG TCACTGACTG
1141TGGAAGTCTC CATTGACAGG AATCCTCCTC AATTACAAGG CTTCCGGAAG TTCAACATTC
1201TGACTTCAAA CCAGAAAACT TTGACCCCCG AGAAGGGGCA GAGTCAGGGT TTGATTTGGG
1261ACTTTGGTTA CCTGACTCTG GTGGAGCAAC GTTCAGGTGG TTCAGGAAAG GGCAGCAATA
1321AGGGGCCACT AGGTGTGACA GAGGAACTGC ACATCATCAG CTTCACGGTC AAATATACCT
1381ACCAGGGTCT GAAGCAGGAG CTGAAAACGG ACACCCTCCC TGTGGTGATT ATTTCCAACA
1441TGAACCAGCT CTCAATTGCC TGGGCTTCAG TTCTCTGGTT CAATTTGCTC AGCCCAAACC
1501TTCAGAACCA GCAGTTCTTC TCCAACCCCC CCAAGGCCCC CTGGAGCTTG CTGGGCCCTG
1561CTCTCAGTTG GCAGTTCTCC TCCTATGTTG GCCGAGGCCT CAACTCAGAC CAGCTGAGCA
1621TGCTGAGAAA CAAGCTGTTC GGGCAGAACT GTAGGACTGA GGATCCATTA TTGTCCTGGG
1681CTGACTTCAC TAAGCGAGAG AGCCCTCCTG GCAAGTTACC ATTCTGGACA TGGCTGGACA
1741AAATTCTGGA GTTGGTACAT GACCACCTGA AGGATCTCTG GAATGATGGA CGCATCATGG
1801GCTTTGTGAG TCGGAGCCAG GAGCGCCGGC TGCTGAAGAA GACCATGTCT GGCACCTTTC
1861TACTGCGCTT CAGTGAATCG TCAGAAGGGG GCATTACCTG CTCCTGGGTG GAGCACCAGG
1921ATGATGACAA GGTGCTCATC TACTCTGTGC AACCGTACAC GAAGGAGGTG CTGCAGTCAC
1981TCCCGCTGAC TGAAATCATC CGCCATTACC AGTTGCTCAC TGAGGAGAAT ATACCTGAAA
2041ACCCACTGCG CTTCCTCTAT CCCCGAATCC CCCGGGATGA AGCTTTTGGG TGCTACTACC
2101AGGAGAAAGT TAATCTCCAG GAACGGAGGA AATACCTGAA ACACAGGCTC ATTGTGGTCT
2161CTAATAGACA GGTGGATGAA CTGCAACAAC CGCTGGAGCT TAAGCCAGAG CCAGAGCTGG
2221AGTCATTAGA GCTGGAACTA GGGCTGGTGC CAGAGCCAGA GCTCAGCCTG GACTTAGAGC
2281CACTGCTGAA GGCAGGGCTG GATCTGGGGC CAGAGCTAGA GTCTGTGCTG GAGTCCACTC
2341TGGAGCCTGT GATAGAGCCC ACACTATGCA TGGTATCACA AACAGTGCCA GAGCCAGACC
2401AAGGACCTGT ATCACAGCCA GTGCCAGAGC CAGATTTGCC CTGTGATCTG AGACATTTGA
2461ACACTGAGCC AATGGAAATC TTCAGAAACT GTGTAAAGAT TGAAGAAATC ATGCCGAATG
2521GTGACCCACT GTTGGCTGGC CAGAACACCG TGGATGAGGT TTACGTCTCC CGCCCCAGCC
2581ACTTCTACAC TGATGGACCC TTGATGCCTT CTGACTTCTA CCCAACTTTC TTGTACAAAG
2641Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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