Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_01608
- Subject:
- XR_001748857.1
- Aligned Length:
- 4484
- Identities:
- 2400
- Gaps:
- 2063
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAAGTTGTAGGCGGGGCGCGAGGTTCTAGTACCCGAGCTCATACTAGGGACGGGAAGTCGCGACCAGAGCCATT 74
Query 1 -------------------------------------ATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCC 37
|||||||||||||||||||||||||||||||||||||
Sbjct 75 GGAGGGCGCGGGGACTGCAACCCTAATCAGAGCCCAAATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCC 148
Query 38 CCTTTCAGGATCAGCTGCACCAGCTTTACTCGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTC 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCTTTCAGGATCAGCTGCACCAGCTTTACTCGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTC 222
Query 112 TGGATTGAAGACCAGAACTGGCAGGAAGCTGCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCA 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGGATTGAAGACCAGAACTGGCAGGAAGCTGCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCA 296
Query 186 CTTCTTGGATCAGCTGAACTATGAGTGTGGCCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATT 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTTCTTGGATCAGCTGAACTATGAGTGTGGCCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATT 370
Query 260 TGCGGAAATTCTGCCGGGACATTCAGCCCTTTTCCCAGGATCCTACCCAGTTGGCTGAGATGATCTTTAACCTC 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGCGGAAATTCTGCCGGGACATTCAGCCCTTTTCCCAGGATCCTACCCAGTTGGCTGAGATGATCTTTAACCTC 444
Query 334 CTTCTGGAAGAAAAAAGAATTTTGATCCAGGCTCAGAGGGCCCAATTGGAACAAGGAGAGCCAGTTCTCGAAAC 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTTCTGGAAGAAAAAAGAATTTTGATCCAGGCTCAGAGGGCCCAATTGGAACAAGGAGAGCCAGTTCTCGAAAC 518
Query 408 ACCTGTGGAGAGCCAGCAACATGAGATTGAATCCCGGATCCTGGATTTAAGGGCTATGATGGAGAAGCTGGTAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACCTGTGGAGAGCCAGCAACATGAGATTGAATCCCGGATCCTGGATTTAAGGGCTATGATGGAGAAGCTGGTAA 592
Query 482 AATCCATCAGCCAACTGAAAGACCAGCAGGATGTCTTCTGCTTCCGATATAAGATCCAGGCCAAAGGGAAGACA 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AATCCATCAGCCAACTGAAAGACCAGCAGGATGTCTTCTGCTTCCGATATAAGATCCAGGCCAAAGGGAAGACA 666
Query 556 CCCTCTCTGGACCCCCATCAGACCAAAGAGCAGAAGATTCTGCAGGAAACTCTCAATGAACTGGACAAAAGGAG 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCCTCTCTGGACCCCCATCAGACCAAAGAGCAGAAGATTCTGCAGGAAACTCTCAATGAACTGGACAAAAGGAG 740
Query 630 AAAGGAGGTGCTGGATGCCTCCAAAGCACTGCTAGGCCGATTAACTACCCTAATCGAGCTACTGCTGCCAAAGT 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAGGAGGTGCTGGATGCCTCCAAAGCACTGCTAGGCCGATTAACTACCCTAATCGAGCTACTGCTGCCAAAGT 814
Query 704 TGGAGGAGTGGAAGGCCCAGCAGCAAAAAGCCTGCATCAGAGCTCCCATTGACCACGGGTTGGAACAGCTGGAG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGGAGGAGTGGAAGGCCCAGCAGCAAAAAGCCTGCATCAGAGCTCCCATTGACCACGGGTTGGAACAGCTGGAG 888
Query 778 ACATGGTTCACAGCTGGAGCAAAGCTGTTGTTTCACCTGAGGCAGCTGCTGAAGGAGCTGAAGGGACTGAGTTG 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACATGGTTCACAGCTGGAGCAAAGCTGTTGTTTCACCTGAGGCAGCTGCTGAAGGAGCTGAAGGGACTGAGTTG 962
Query 852 CCTGGTTAGCTATCAGGATGACCCTCTGACCAAAGGGGTGGACCTACGCAACGCCCAGGTCACAGAGTTGCTAC 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCTGGTTAGCTATCAGGATGACCCTCTGACCAAAGGGGTGGACCTACGCAACGCCCAGGTCACAGAGTTGCTAC 1036
Query 926 AGCGTCTGCTCCACAGAGCCTTTGTGGTAGAAACCCAGCCCTGCATGCCCCAAACTCCCCATCGACCCCTCATC 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGCGTCTGCTCCACAGAGCCTTTGTGGTAGAAACCCAGCCCTGCATGCCCCAAACTCCCCATCGACCCCTCATC 1110
Query 1000 CTCAAGACTGGCAGCAAGTTCACCGTCCGAACAAGGCTGCTGGTGAGACTCCAGGAAGGCAATGAGTCACTGAC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTCAAGACTGGCAGCAAGTTCACCGTCCGAACAAGGCTGCTGGTGAGACTCCAGGAAGGCAATGAGTCACTGAC 1184
Query 1074 TGTGGAAGTCTCCATTGACAGGAATCCTCCTCAATTACAAGGCTTCCGGAAGTTCAACATTCTGACTTCAAACC 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGTGGAAGTCTCCATTGACAGGAATCCTCCTCAATTACAAGGCTTCCGGAAGTTCAACATTCTGACTTCAAACC 1258
Query 1148 AGAAAACTTTGACCCCCGAGAAGGGGCAGAGTCAGGGTTTGATTTGGGACTTTGGTTACCTGACTCTGGTGGAG 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGAAAACTTTGACCCCCGAGAAGGGGCAGAGTCAGGGTTTGATTTGGGACTTTGGTTACCTGACTCTGGTGGAG 1332
Query 1222 CAACGTTCAGGTGGTTCAGGAAAGGGCAGCAATAAGGGGCCACTAGGTGTGACAGAGGAACTGCACATCATCAG 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CAACGTTCAGGTGGTTCAGGAAAGGGCAGCAATAAGGGGCCACTAGGTGTGACAGAGGAACTGCACATCATCAG 1406
Query 1296 CTTCACGGTCAAATATACCTACCAGGGTCTGAAGCAGGAGCTGAAAACGGACACCCTCCCTGTG-GTGATTATT 1368
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1407 CTTCACGGTCAAATATACCTACCAGGGTCTGAAGCAGGAGCTGAAA---------------GTGAGTG------ 1459
Query 1369 TCCAACATG-----------------AACCAGCTCTCAATTGCCTG--GGCTTCAGTTCTCTGGTTCAATTTGC 1423
||.||| ||.||||| |||...| |||.|.|| ||...|.
Sbjct 1460 ---AAAATGGAGGGCAAGGAGAGAGAAAGCAGCT-----TTGGAAGAAGGCATAAG-----------AAGGGGA 1514
Query 1424 TCAGCCCAAACCTTCAGAA-CCAGCAGTTCTTCTCCAACCCCCCCAAGGCCCCCTGGAGCTTGCTGGGCCCTGC 1496
| ||| ||||| || |||| ..||.|||||| ||||.|
Sbjct 1515 T------AAA----CAGAAGCC------TCTT-------------GGGGACCCCTG--GCTTCC---------- 1547
Query 1497 TCTCAGTTGGCAGTTCTCCTCCTATGTTGGCCGAGGCCTCAACTCAGACCAGCTGAGCATGCTGAGAAACAAGC 1570
|||.||.|.||| |||.| ||| |.|
Sbjct 1548 ---------------CTCATCATCTGT-------------------------CTGTG---GCT--------ATC 1570
Query 1571 TGTTC----GGGCAGAACTGTAGGACTGAGGATCCATTATTGTCCTGGGCTGACTTCACTAAGCGAGAGAGCCC 1640
|||.| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 TGTCCCACAGGGCAGAACTGTAGGACTGAGGATCCATTATTGTCCTGGGCTGACTTCACTAAGCGAGAGAGCCC 1644
Query 1641 TCCTGGCAAGTTACCATTCTGGACATGGCTGGACAAAATTCTGGAGTTGGTACATGACCACCTGAAGGATCTCT 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 TCCTGGCAAGTTACCATTCTGGACATGGCTGGACAAAATTCTGGAGTTGGTACATGACCACCTGAAGGATCTCT 1718
Query 1715 GGAATGATGGACGCATCATGGGCTTTGTGAGTCGGAGCCAGGAGCGCCGGCTGCTGAAGAAGACCATGTCTGGC 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 GGAATGATGGACGCATCATGGGCTTTGTGAGTCGGAGCCAGGAGCGCCGGCTGCTGAAGAAGACCATGTCTGGC 1792
Query 1789 ACCTTTCTACTGCGCTTCAGTGAATCGTCAGAAGGGGGCATTACCTGCTCCTGGGTGGAGCACCAGGATGATGA 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 ACCTTTCTACTGCGCTTCAGTGAATCGTCAGAAGGGGGCATTACCTGCTCCTGGGTGGAGCACCAGGATGATGA 1866
Query 1863 CAAGGTGCTCATCTACTCTGTGCAACCGTACACGAAGGAGGTGCTGCAGTCACTCCCGCTGACTGAAATCATCC 1936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1867 CAAGGTGCTCATCTACTCTGTGCAACCGTACACGAAGGAGGTGCTGCAGTCACTCCCGCTGACTGAAATCATCC 1940
Query 1937 GCCATTACCAGTTGCTCACTGAGGAGAATATACCTGAAAACCCACTGCGCTTCCTCTATCCCCGAATCCCCCGG 2010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 GCCATTACCAGTTGCTCACTGAGGAGAATATACCTGAAAACCCACTGCGCTTCCTCTATCCCCGAATCCCCCGG 2014
Query 2011 GATGAAGCTTTTGGGTGCTACTACCAGGAGAAAGTTAATCTCCAGGAACGGAGGAAATACCTGAAACACAGGCT 2084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2015 GATGAAGCTTTTGGGTGCTACTACCAGGAGAAAGTTAATCTCCAGGAACGGAGGAAATACCTGAAACACAGGCT 2088
Query 2085 CATTGTGGTCTCTAATAGACAGGTGGATGAACTGCAACAACCGCTGGAGCTTAAGCCAGAGCCAGAGCTGGAGT 2158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2089 CATTGTGGTCTCTAATAGACAGGTGGATGAACTGCAACAACCGCTGGAGCTTAAGCCAGAGCCAGAGCTGGAGT 2162
Query 2159 CATTAGAGCTGGAACTAGGGCTGGTGCCAGAGCCAGAGCTCAGCCTGGACTTAGAGCCACTGCTGAAGGCAGGG 2232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2163 CATTAGAGCTGGAACTAGGGCTGGTGCCAGAGCCAGAGCTCAGCCTGGACTTAGAGCCACTGCTGAAGGCAGGG 2236
Query 2233 CTGGATCTGGGGCCAGAGCTAGAGTCTGTGCTGGAGTCCACTCTGGAGCCTGTGATAGAGCCCACACTATGCAT 2306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 CTGGATCTGGGGCCAGAGCTAGAGTCTGTGCTGGAGTCCACTCTGGAGCCTGTGATAGAGCCCACACTATGCAT 2310
Query 2307 GGTATCACAAACAGTGCCAGAGCCAGACCAAGGACCTGTATCACAGCCAGTGCCAGAGCCAGATTTGCCCTGTG 2380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 GGTATCACAAACAGTGCCAGAGCCAGACCAAGGACCTGTATCACAGCCAGTGCCAGAGCCAGATTTGCCCTGTG 2384
Query 2381 ATCTGAGACATTTGAACACTGAGCCAATGGAAATCTTCAGAAACTGTGTAAAGATTGAAGAAATCATGCCGAAT 2454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2385 ATCTGAGACATTTGAACACTGAGCCAATGGAAATCTTCAGAAACTGTGTAAAGATTGAAGAAATCATGCCGAAT 2458
Query 2455 GGTGACCCACTGTTGGCTGGCCAGAACACCGTGGATGAGGTTTACGTCTCCCGCCCCAGCCACTTCTACACTGA 2528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2459 GGTGACCCACTGTTGGCTGGCCAGAACACCGTGGATGAGGTTTACGTCTCCCGCCCCAGCCACTTCTACACTGA 2532
Query 2529 TGGACCCTTGATGCCTTCTGACTTC------------------------------------------------- 2553
|||||||||||||||||||||||||
Sbjct 2533 TGGACCCTTGATGCCTTCTGACTTCTAGGAACCACATTTCCTCTGTTCTTTTCATATCTCTTGCCCTTCCTACT 2606
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2607 CCTCATAGCATGATATTGTTCTCCAAGGATGGGAATCAGGCATGTGTCCCTTCCAAGCTGTGTTAACTGTTCAA 2680
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2681 ACTCAGGCCTGTGTGACTCCATTGGGGTGAGAGGTGAAAGCATAACATGGGTACAGAGGGGACAACAATGAATC 2754
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2755 AGAACAGATGCTGAGCCATAGGTCTAAATAGGATCCTGGAGGCTGCCTGCTGTGCTGGGAGGTATAGGGGTCCT 2828
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2829 GGGGGCAGGCCAGGGCAGTTGACAGGTACTTGGAGGGCTCAGGGCAGTGGCTTCTTTCCAGTATGGAAGGATTT 2902
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2903 CAACATTTTAATAGTTGGTTAGGCTAAACTGGTGCATACTGGCATTGGCCCTTGGTGGGGAGCACAGACACAGG 2976
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2977 ATAGGACTCCATTTCTTTCTTCCATTCCTTCATGTCTAGGATAACTTGCTTTCTTCTTTCCTTTACTCCTGGCT 3050
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3051 CAAGCCCTGAATTTCTTCTTTTCCTGCAGGGGTTGAGAGCTTTCTGCCTTAGCCTACCATGTGAAACTCTACCC 3124
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3125 TGAAGAAAGGGATGGATAGGAAGTAGACCTCTTTTTCTTACCAGTCTCCTCCCCTACTCTGCCCCTAAGCTGGC 3198
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3199 TGTACCTGTTCCTCCCCCATAAAATGATCCTGCCAATCTAATGTGAGTGTGAAGCTTTGCACACTAGTTTATGC 3272
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3273 TACCTAGTCTCCACTTTCTCAATGCTTAGGAGACAGATCACTCCTGGAGGCTGGGGATGGTAGGATTGCTGGGG 3346
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3347 ATTTTTTTTTTTTTAAACAGGGTCTCACTCTGTTGCCCAGGCTAGAGTGCAATGGTGCAATCACAGCTCACTGC 3420
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3421 AGCCTCAACCTCCTGGGTTCAAGCAATCCTCCTACCTCAGCCTCCTGGGTAGCTAGCACCATGGCATGCGCCAC 3494
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3495 CATGCCCTATTTTTTTTTTTTAAAGACAGGGTCTTGCTATATTGCCCAGGCTGGTCTTGAACTGGGCTCAAGTG 3568
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3569 ATCCTCACGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGTGCTTGGCCAGGATTTTTTTTT 3642
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3643 TTTTTTTTTTGAGATGGAGTTTCTCTCTTGTTGTCCAGGCTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAA 3716
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3717 CCTCCGCCTTCCGGGTTCAAGTGACTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGATCTGCACCACC 3790
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3791 ATGCCCAGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGA 3864
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3865 CCTCAAGTGATCTGTCCACCTCGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACTGTTCCCAGCAGGAA 3938
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3939 TTTCTTTTTTATAGTATTGGATAAAGTTTGGTGTTTTTACAGAGGAGAAGCAATGGGTCTTAGCTCTTTCTCTA 4012
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 4013 TTATGTTATCATCCTCCCTTTTTTGTACAATATGTTGTTTACCTGAAAGGAAGGTTTCTATTCGTTGGTTGTGG 4086
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 4087 ACCTGGACAAAGTCCAAGTCTGTGGAACTTAAAACCTTGAAGGTCTGTCATAGGACTCTGGACAATCTCACACC 4160
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 4161 TTAGCTATTCCCAGGGAACCCCAGGGGGCAACTGACATTGCTCCAAGATGTTCTCCTGATGTAGCTTGAGATAT 4234
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 4235 AAAGGAAAGGCCCTGCACAGGTGGCTGTTTCTTGTCTGTTATGTCAGAGGAACAGTCCTGTTCAGAAAGGGGCT 4308
Query 2554 -------------------------------------------- 2553
Sbjct 4309 CTTCTGAGCAGAAATGGCTAATAAACTTTGTGCTGATCTGGAAA 4352
