Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_01608
• Subject: XR_002957376.1
• Aligned Length: 4613
• Identities: 2541
• Gaps: 2072

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACCCGAGCTCATACTAGGGACGGGAAGTCGCGACCAGAGCCATTGGAGGGCGCGGGGACTGCAACCCTAATCAG  74

Query    1  -------ATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCCCCTTTCAGGATCAGCTGCACCAGCTTTACT  67
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AGCCCAAATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCCCCTTTCAGGATCAGCTGCACCAGCTTTACT  148

Query   68  CGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTCTGGATTGAAGACCAGAACTGGCAGGAAGCT  141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTCTGGATTGAAGACCAGAACTGGCAGGAAGCT  222

Query  142  GCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCACTTCTTGGATCAGCTGAACTATGAGTGTGG  215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCACTTCTTGGATCAGCTGAACTATGAGTGTGG  296

Query  216  CCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATTTGCGGAAATTCTGCCGGGACATTCAGCCCT  289
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct  297  CCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATTTGCGGAAATTCTGCCGGGACATT-------  363

Query  290  TTTCCCAGGATCCTACCCAGTTGGCTGAGATGATCTTTAACCTCCTTCTGGAAGAAAAAAGAATTTTGATCCAG  363
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  364  -----CAGGATCCTACCCAGTTGGCTGAGATGATCTTTAACCTCCTTCTGGAAGAAAAAAGAATTTTGATCCAG  432

Query  364  GCTCAGAGGGCCCAATTGGAACAAGGAGAGCCAGTTCTCGAAACACCTGTGGAGAGCCAGCAACATGAGATTGA  437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  433  GCTCAGAGGGCCCAATTGGAACAAGGAGAGCCAGTTCTCGAAACACCTGTGGAGAGCCAGCAACATGAGATTGA  506

Query  438  ATCCCGGATCCTGGATTTAAGGGCTATGATGGAGAAGCTGGTAAAATCCATCAGCCAACTGAAAGACCAGCAGG  511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  507  ATCCCGGATCCTGGATTTAAGGGCTATGATGGAGAAGCTGGTAAAATCCATCAGCCAACTGAAAGACCAGCAGG  580

Query  512  ATGTCTTCTGCTTCCGATATAAGATCCAGGCCAAAGGGAAGACACCCTCTCTGGACCCCCATCAGACCAAAGAG  585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  581  ATGTCTTCTGCTTCCGATATAAGATCCAGGCCAAAGGGAAGACACCCTCTCTGGACCCCCATCAGACCAAAGAG  654

Query  586  CAGAAGATTCTGCAGGAAACTCTCAATGAACTGGACAAAAGGAGAAAGGAGGTGCTGGATGCCTCCAAAGCACT  659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  655  CAGAAGATTCTGCAGGAAACTCTCAATGAACTGGACAAAAGGAGAAAGGAGGTGCTGGATGCCTCCAAAGCACT  728

Query  660  GCTAGGCCGATTAACTACCCTAATCGAGCTACTGCTGCCAAAGTTGGAGGAGTGGAAGGCCCAGCAGCAAAAAG  733
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  729  GCTAGGCCGATTAACTACCCTAATCGAGCTACTGCTGCCAAAGTTGGAGGAGTGGAAGGCCCAGCAGCAAAAAG  802

Query  734  CCTGCATCAGAGCTCCCATTGACCACGGGTTGGAACAGCTGGAGACATGGTTCACAGCTGGAGCAAAGCTGTTG  807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  803  CCTGCATCAGAGCTCCCATTGACCACGGGTTGGAACAGCTGGAGACATGGTTCACAGCTGGAGCAAAGCTGTTG  876

Query  808  TTTCACCTGAGGCAGCTGCTGAAGGAGCTGAAGGGACTGAGTTGCCTGGTTAGCTATCAGGATGACCCTCTGAC  881
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  877  TTTCACCTGAGGCAGCTGCTGAAGGAGCTGAAGGGACTGAGTTGCCTGGTTAGCTATCAGGATGACCCTCTGAC  950

Query  882  CAAAGGGGTGGACCTACGCAACGCCCAGGTCACAGAGTTGCTACAGCGTCTGCTCCACAGAGCCTTTGTGGTAG  955
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  951  CAAAGGGGTGGACCTACGCAACGCCCAGGTCACAGAGTTGCTACAGCGTCTGCTCCACAGAGCCTTTGTGGTAG  1024

Query  956  AAACCCAGCCCTGCATGCCCCAAACTCCCCATCGACCCCTCATCCTCAAGACTGGCAGCAAGTTCACCGTCCGA  1029
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025  AAACCCAGCCCTGCATGCCCCAAACTCCCCATCGACCCCTCATCCTCAAGACTGGCAGCAAGTTCACCGTCCGA  1098

Query 1030  ACAAGGCTGCTGGTGAGACTCCAGGAAGGCAATGAGTCACTGACTGTGGAAGTCTCCATTGACAGGAATCCTCC  1103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099  ACAAGGCTGCTGGTGAGACTCCAGGAAGGCAATGAGTCACTGACTGTGGAAGTCTCCATTGACAGGAATCCTCC  1172

Query 1104  TCAATTACAAGGCTTCCGGAAGTTCAACATTCTGACTTCAAACCAGAAAACTTTGACCCCCGAGAAGGGGCAGA  1177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173  TCAATTACAAGGCTTCCGGAAGTTCAACATTCTGACTTCAAACCAGAAAACTTTGACCCCCGAGAAGGGGCAGA  1246

Query 1178  GTCAGGGTTTGATTTGGGACTTTGGTTACCTGACTCTGGTGGAGCAACGTTCAGGTGGTTCAGGAAAGGGCAGC  1251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247  GTCAGGGTTTGATTTGGGACTTTGGTTACCTGACTCTGGTGGAGCAACGTTCAGGTGGTTCAGGAAAGGGCAGC  1320

Query 1252  AATAAGGGGCCACTAGGTGTGACAGAGGAACTGCACATCATCAGCTTCACGGTCAAATATACCTACCAGGGTCT  1325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321  AATAAGGGGCCACTAGGTGTGACAGAGGAACTGCACATCATCAGCTTCACGGTCAAATATACCTACCAGGGTCT  1394

Query 1326  GAAGCAGGAGCTGAAA----------------------------------------------------------  1341
            ||||||||||||||||                                                          
Sbjct 1395  GAAGCAGGAGCTGAAAGTGAGTGAAAATGGAGGGCAAGGAGAGAGAAAGCAGCTTTGGAAGAAGGCATAAGAAG  1468

Query 1342  -----------------------ACGGACACCCTCCCTGTGGTGATTATTTCCAACATGAACCAGCTCTCAATT  1392
                                   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469  GGGATAAACAGAAGCCTCTTGGGACGGACACCCTCCCTGTGGTGATTATTTCCAACATGAACCAGCTCTCAATT  1542

Query 1393  GCCTGGGCTTCAGTTCTCTGGTTCAATTTGCTCAGCCCAAACCTT-----------------------------  1437
            |||||||||||||||||||||||||||||||||||||||||||||                             
Sbjct 1543  GCCTGGGCTTCAGTTCTCTGGTTCAATTTGCTCAGCCCAAACCTTCAGGTAGGGGAGTGGGGCCGACAGGTCAA  1616

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 1617  GGCGCGAGAGGAGGGGTGTGGAAGCTTGGTGTGATAGGTTGCTTCTGAGCCAGCCTACACTGCTCCCACCCCTG  1690

Query 1438  CAGAACCAGCAGTTCTTCTCCAACCCCCCCAAGGCCCCCTGGAGCTTGCTGGGCCCTGCTCTCAGTTGGCAGTT  1511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691  CAGAACCAGCAGTTCTTCTCCAACCCCCCCAAGGCCCCCTGGAGCTTGCTGGGCCCTGCTCTCAGTTGGCAGTT  1764

Query 1512  CTCCTCCTATGTTGGCCGAGGCCTCAACTCAGACCAGCTGAGCATGCTGAGAAACAAGCTGTTCGGGCAGAACT  1585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765  CTCCTCCTATGTTGGCCGAGGCCTCAACTCAGACCAGCTGAGCATGCTGAGAAACAAGCTGTTCGGGCAGAACT  1838

Query 1586  GTAGGACTGAGGATCCATTATTGTCCTGGGCTGACTTCACTAAGCGAGAGAGCCCTCCTGGCAAGTTACCATTC  1659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839  GTAGGACTGAGGATCCATTATTGTCCTGGGCTGACTTCACTAAGCGAGAGAGCCCTCCTGGCAAGTTACCATTC  1912

Query 1660  TGGACATGGCTGGACAAAATTCTGGAGTTGGTACATGACCACCTGAAGGATCTCTGGAATGATGGACGCATCAT  1733
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913  TGGACATGGCTGGACAAAATTCTGGAGTTGGTACATGACCACCTGAAGGATCTCTGGAATGATGGACGCATCAT  1986

Query 1734  GGGCTTTGTGAGTCGGAGCCAGGAGCGCCGGCTGCTGAAGAAGACCATGTCTGGCACCTTTCTACTGCGCTTCA  1807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987  GGGCTTTGTGAGTCGGAGCCAGGAGCGCCGGCTGCTGAAGAAGACCATGTCTGGCACCTTTCTACTGCGCTTCA  2060

Query 1808  GTGAATCGTCAGAAGGGGGCATTACCTGCTCCTGGGTGGAGCACCAGGATGATGACAAGGTGCTCATCTACTCT  1881
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2061  GTGAATCGTCAGAAGGGGGCATTACCTGCTCCTGGGTGGAGCACCAGGATGATGACAAGGTGCTCATCTACTCT  2134

Query 1882  GTGCAACCGTACACGAAGGAGGTGCTGCAGTCACTCCCGCTGACTGAAATCATCCGCCATTACCAGTTGCTCAC  1955
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2135  GTGCAACCGTACACGAAGGAGGTGCTGCAGTCACTCCCGCTGACTGAAATCATCCGCCATTACCAGTTGCTCAC  2208

Query 1956  TGAGGAGAATATACCTGAAAACCCACTGCGCTTCCTCTATCCCCGAATCCCCCGGGATGAAGCTTTTGGGTGCT  2029
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2209  TGAGGAGAATATACCTGAAAACCCACTGCGCTTCCTCTATCCCCGAATCCCCCGGGATGAAGCTTTTGGGTGCT  2282

Query 2030  ACTACCAGGAGAAAGTTAATCTCCAGGAACGGAGGAAATACCTGAAACACAGGCTCATTGTGGTCTCTAATAGA  2103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283  ACTACCAGGAGAAAGTTAATCTCCAGGAACGGAGGAAATACCTGAAACACAGGCTCATTGTGGTCTCTAATAGA  2356

Query 2104  CAGGTGGATGAACTGCAACAACCGCTGGAGCTTAAGCCAGAGCCAGAGCTGGAGTCATTAGAGCTGGAACTAGG  2177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2357  CAGGTGGATGAACTGCAACAACCGCTGGAGCTTAAGCCAGAGCCAGAGCTGGAGTCATTAGAGCTGGAACTAGG  2430

Query 2178  GCTGGTGCCAGAGCCAGAGCTCAGCCTGGACTTAGAGCCACTGCTGAAGGCAGGGCTGGATCTGGGGCCAGAGC  2251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2431  GCTGGTGCCAGAGCCAGAGCTCAGCCTGGACTTAGAGCCACTGCTGAAGGCAGGGCTGGATCTGGGGCCAGAGC  2504

Query 2252  TAGAGTCTGTGCTGGAGTCCACTCTGGAGCCTGTGATAGAGCCCACACTATGCATGGTATCACAAACAGTGCCA  2325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2505  TAGAGTCTGTGCTGGAGTCCACTCTGGAGCCTGTGATAGAGCCCACACTATGCATGGTATCACAAACAGTGCCA  2578

Query 2326  GAGCCAGACCAAGGACCTGTATCACAGCCAGTGCCAGAGCCAGATTTGCCCTGTGATCTGAGACATTTGAACAC  2399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2579  GAGCCAGACCAAGGACCTGTATCACAGCCAGTGCCAGAGCCAGATTTGCCCTGTGATCTGAGACATTTGAACAC  2652

Query 2400  TGAGCCAATGGAAATCTTCAGAAACTGTGTAAAGATTGAAGAAATCATGCCGAATGGTGACCCACTGTTGGCTG  2473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2653  TGAGCCAATGGAAATCTTCAGAAACTGTGTAAAGATTGAAGAAATCATGCCGAATGGTGACCCACTGTTGGCTG  2726

Query 2474  GCCAGAACACCGTGGATGAGGTTTACGTCTCCCGCCCCAGCCACTTCTACACTGATGGACCCTTGATGCCTTCT  2547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2727  GCCAGAACACCGTGGATGAGGTTTACGTCTCCCGCCCCAGCCACTTCTACACTGATGGACCCTTGATGCCTTCT  2800

Query 2548  GACTTC--------------------------------------------------------------------  2553
            ||||||                                                                    
Sbjct 2801  GACTTCTAGGAACCACATTTCCTCTGTTCTTTTCATATCTCTTGCCCTTCCTACTCCTCATAGCATGATATTGT  2874

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 2875  TCTCCAAGGATGGGAATCAGGCATGTGTCCCTTCCAAGCTGTGTTAACTGTTCAAACTCAGGCCTGTGTGACTC  2948

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 2949  CATTGGGGTGAGAGGTGAAAGCATAACATGGGTACAGAGGGGACAACAATGAATCAGAACAGATGCTGAGCCAT  3022

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3023  AGGTCTAAATAGGATCCTGGAGGCTGCCTGCTGTGCTGGGAGGTATAGGGGTCCTGGGGGCAGGCCAGGGCAGT  3096

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3097  TGACAGGTACTTGGAGGGCTCAGGGCAGTGGCTTCTTTCCAGTATGGAAGGATTTCAACATTTTAATAGTTGGT  3170

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3171  TAGGCTAAACTGGTGCATACTGGCATTGGCCCTTGGTGGGGAGCACAGACACAGGATAGGACTCCATTTCTTTC  3244

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3245  TTCCATTCCTTCATGTCTAGGATAACTTGCTTTCTTCTTTCCTTTACTCCTGGCTCAAGCCCTGAATTTCTTCT  3318

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3319  TTTCCTGCAGGGGTTGAGAGCTTTCTGCCTTAGCCTACCATGTGAAACTCTACCCTGAAGAAAGGGATGGATAG  3392

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3393  GAAGTAGACCTCTTTTTCTTACCAGTCTCCTCCCCTACTCTGCCCCTAAGCTGGCTGTACCTGTTCCTCCCCCA  3466

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3467  TAAAATGATCCTGCCAATCTAATGTGAGTGTGAAGCTTTGCACACTAGTTTATGCTACCTAGTCTCCACTTTCT  3540

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3541  CAATGCTTAGGAGACAGATCACTCCTGGAGGCTGGGGATGGTAGGATTGCTGGGGATTTTTTTTTTTTTAAACA  3614

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3615  GGGTCTCACTCTGTTGCCCAGGCTAGAGTGCAATGGTGCAATCACAGCTCACTGCAGCCTCAACCTCCTGGGTT  3688

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3689  CAAGCAATCCTCCTACCTCAGCCTCCTGGGTAGCTAGCACCATGGCATGCGCCACCATGCCCTATTTTTTTTTT  3762

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3763  TTAAAGACAGGGTCTTGCTATATTGCCCAGGCTGGTCTTGAACTGGGCTCAAGTGATCCTCACGCCTTGGCCTC  3836

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3837  CCAAAGTGCTGGGATTATAGGCATGAGCCACTGTGCTTGGCCAGGATTTTTTTTTTTTTTTTTTTGAGATGGAG  3910

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3911  TTTCTCTCTTGTTGTCCAGGCTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACCTCCGCCTTCCGGGTTCA  3984

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 3985  AGTGACTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGATCTGCACCACCATGCCCAGCTAATTTTGTA  4058

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 4059  TTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGTCCAC  4132

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 4133  CTCGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACTGTTCCCAGCAGGAATTTCTTTTTTATAGTATTG  4206

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 4207  GATAAAGTTTGGTGTTTTTACAGAGGAGAAGCAATGGGTCTTAGCTCTTTCTCTATTATGTTATCATCCTCCCT  4280

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 4281  TTTTTGTACAATATGTTGTTTACCTGAAAGGAAGGTTTCTATTCGTTGGTTGTGGACCTGGACAAAGTCCAAGT  4354

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 4355  CTGTGGAACTTAAAACCTTGAAGGTCTGTCATAGGACTCTGGACAATCTCACACCTTAGCTATTCCCAGGGAAC  4428

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 4429  CCCAGGGGGCAACTGACATTGCTCCAAGATGTTCTCCTGATGTAGCTTGAGATATAAAGGAAAGGCCCTGCACA  4502

Query 2554  --------------------------------------------------------------------------  2553
                                                                                      
Sbjct 4503  GGTGGCTGTTTCTTGTCTGTTATGTCAGAGGAACAGTCCTGTTCAGAAAGGGGCTCTTCTGAGCAGAAATGGCT  4576

Query 2554  -------------------------  2553
                                     
Sbjct 4577  AATAAACTTTGTGCTGATCTGGAAA  4601