Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01659
Subject:
XR_002958817.1
Aligned Length:
2900
Identities:
1194
Gaps:
1652

Alignment

Query    1  ----------------------------ATGGCGGAG-GATG-----TTTCCTCAGC-----GGCCCCGAGCCC  35
                                        ||..|.||| ||||     |.|.|.||.|     ||||||||||||
Sbjct    1  ATGAGCAGCAGTATAGCCGTTGCTAAGGATATCAGAGAGATGGGCTATGTACACAACAGCTGGGCCCCGAGCCC  74

Query   36  GCGGGGCTGTGCGGATGGTAGGGATGCCGACCCTACTGAGGAGCAGATGGCAGAAACAGAGAGAAACGACGAGG  109
            ..||||||||||.|||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TTGGGGCTGTGCAGATGGTAGGGATGCCAACCCTACTGAGGAGCAGATGGCAGAAACAGAGAGAAACGACGAGG  148

Query  110  AGCAGTTCGAATGCCAGGAACTGCTCGAGTGCCAGGTGCAGGTGGGGGCCCCCGAGGAGGAGGAGGAGGAGGAG  183
            ||||||||||.|||||||||||||||||||||..||||||||||||.||||||         ||||||||||||
Sbjct  149  AGCAGTTCGAGTGCCAGGAACTGCTCGAGTGCTGGGTGCAGGTGGGAGCCCCC---------GAGGAGGAGGAG  213

Query  184  GAGGACGCGGGCCTGGTGGCCGAGGCCGAGGCCGTGGCTGCCGGCTGGATGCTCGATTTCCTCTGCCTCTCTCT  257
            ||||||.|||||||||||||.|||||||||||.||||||||.||||||||||||||||||||||||||||||||
Sbjct  214  GAGGACCCGGGCCTGGTGGCTGAGGCCGAGGCTGTGGCTGCTGGCTGGATGCTCGATTTCCTCTGCCTCTCTCT  287

Query  258  TTGCCGAGCTTTCCGCGACGGCCGCTCCGAGGACTTCCGCAGGACCCGCAACAGCGCAGAGGCTATTATTCATG  331
            ||||.||||||||||||||||||||.|.|||||||||.||.|||||||||||||||||||||||||||||||||
Sbjct  288  TTGCTGAGCTTTCCGCGACGGCCGCCCTGAGGACTTCTGCCGGACCCGCAACAGCGCAGAGGCTATTATTCATG  361

Query  332  GACTATCCAGTCTAACAGCTTGCCAGTTGAGAACGATATACATATGTCAGTTTTTGACAAGAATTGCAGCAGGA  405
            |||||||||||||||||||||.||||||||||||.||||.|||||||||||||||||||||.||||||||||||
Sbjct  362  GACTATCCAGTCTAACAGCTTACCAGTTGAGAACAATATGCATATGTCAGTTTTTGACAAGCATTGCAGCAGGA  435

Query  406  AAAACCCTTGATGCACAGTTTGAAAATGATGAACGAATTACACCCTTGGAATCAGCCCTGATGATTTGGGGTTC  479
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  436  AAAACCCTTGATGTACAGTTTGAAAATGATGAACGAATTACACCCTTGGAATCAGCCCTGATGATTTGGGGTTC  509

Query  480  AATTGAAAAGGAACATGACAAACTTCATGAAGAAATACAGAATTTAATTAAAATTCAGGCTATAGCTGTTTGTA  553
            |||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct  510  AATTGAAAAGGAACATGACAAACTTCATGAAGAAATATAGAATTTAATTAAAATTCAGGCTATAGCTGTTTGTA  583

Query  554  TGGAAAATGGCAACTTTAAAGAAGCAGAAGAAGTCTTTGAAAGAATATTTGGTGATCCAAATTCTCATATGCCT  627
            |||||||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  584  TGGAAAATGACAACTTTACAGAAGCAGAAGAAGTCTTTGAAAGAATATTTGGTGATCCAAATTCTTATATGCCT  657

Query  628  TTCAAAAGCAAATTGCTTATGATAATCTCTCAGAAAGATACATTTCATTCCTTTTTTCAACACTTCAGCTACAA  701
            .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  658  CTCAAAAGCAAATTGCTTATGATAATCTCTCAGAAAGATACATTTCATTCCTTTTTTCAACACTTCAGCTACAA  731

Query  702  CCACATGATGGAGAAAATTAAGAGTTATGTGAATTATGTGCTAAGTGAAAAATCATCAACCTTTCTAATGAAGG  775
            .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  732  TCACATGATGGAGAAAATTAAGAGTTATGTGAATTATGTGCTAAGTGAAAAATCATCAACCTTTCTAATGAAGG  805

Query  776  CAGCGGCAAAAGTAGTAGAAAGCAAAAGGACAAGAACAATAACTTCTCAAGATAAACCTAGTGGTAATGATGTT  849
            ||||.|||||||||||||||||.|||||.|||||||||||||.|||||||||||||||||.|||||||||||||
Sbjct  806  CAGCAGCAAAAGTAGTAGAAAGTAAAAGAACAAGAACAATAATTTCTCAAGATAAACCTAATGGTAATGATGTT  879

Query  850  GAAATGGAAACTGAAGCTAATTTGGATACAAGAAAAAGGTCTCACAAGAATCTTTTCTTATCTAAGTTGCAACA  923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  880  GAAATGGAAACTGAAGCTAATTTGGATACAAGAAAAAGGTCTCACAAGAATCTTTTCTTATCTAAGTTGCAACA  953

Query  924  TGGAACCCAGCAACAAGACCTTAATAAGAAAGAAAGAAGAGTAGGAACTCCTCAAAGTACAAAAAAGAAAAAAG  997
            ||||||||||||||||||||||||||||||||||||.|||||||||||||.|||||||||||||||||||||||
Sbjct  954  TGGAACCCAGCAACAAGACCTTAATAAGAAAGAAAGGAGAGTAGGAACTCTTCAAAGTACAAAAAAGAAAAAAG  1027

Query  998  AAAGCAGAAGAGCCACTGAAAGCAGAATACCTGTTTCAAAGAGTCAGCCGGTAACTCCTGAAAAACATCGAGCT  1071
            ||||||||||||||||||||||||||||||||.|||||||||||||.|.||||||||||||||||||||.||||
Sbjct 1028  AAAGCAGAAGAGCCACTGAAAGCAGAATACCTATTTCAAAGAGTCAACTGGTAACTCCTGAAAAACATCAAGCT  1101

Query 1072  AGAAAAAGACAGGCATGGCTTTGGGAAGAAGACAAGAATTTGAGATCTGGCGTGAGGAAATATGGAGAGGGAAA  1145
            |.|||||.|||.||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1102  AAAAAAAAACAAGCATGGCTTTGGGAAGAAGACAAGAATTTGAGATCTGGCGTGAGGAAACATGGAGAGGGAAA  1175

Query 1146  CTGGTCTAAAATACTGTTGCATTATAAATTCAACAACCGGACAAGTGTCATGTTAAAAGACAGATGGAGGACCA  1219
            |||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 1176  CTGGTCTAAAATACTATTGCATTATAAATTCAACAACCGGACAAGTGTCATATTAAAAGACAGATGGAGGACCA  1249

Query 1220  TGAAGAAACTAAAACTGATTTCCTCAGACAGCGAAGAC------------------------------------  1257
            |||||||||||||||||||||.|||||||||.||||||                                    
Sbjct 1250  TGAAGAAACTAAAACTGATTTGCTCAGACAGTGAAGACTGATTGTGTTTGTAAAAGCTTGATGAAAGGACAGTT  1323

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 1324  AAGTATTTTGATCACTGCATTTTGTTTGAAACTTGTGTCATTGATGTATTTTAAAACTTTTGTTTAAACCATTA  1397

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 1398  CAGTATTTTTCTGTGACCATCAATTAATATGTGGGTTTGTGCTATAAGAGTTAAAGCATATGCTATCATTGTAT  1471

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 1472  TCTTTAAGAACTTTATTTTGATAAAATGTAAATTTGTTGAACCCTGCCACATTTAGTATCCCCACCACCAAATC  1545

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 1546  CTGTTTCAATGAAAAAATTAAAACCTGATACAAAAAAAAAAATTTTCAGTTAACCTATTTTGTGTCTGTAGGCT  1619

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 1620  GACCTCAACCCTGTAACATAACCCATTAAAATGAATTTTTTTTTTAAGACAGAGTTTCTCTCTGTCGCCCAGGC  1693

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 1694  TGGAGTGCAATGGCGCAATTTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCC  1767

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 1768  TCCTGAGTAGCTGGGATTACAGGCACACACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGGCGGGGTT  1841

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 1842  TCACCATGCTGGTCAGGATGGTCTCGAACTCCTGACTTCATGATCCACCCACCTCAGCCTCCCAAAGTGCTGAG  1915

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 1916  ATTACAGACGTGAGCCACTGAGTCCTGCCTAAAATGAATTTTCTAGATGATTGAATAACAGTAGTCCTTTGATA  1989

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 1990  GGAGATAATGATTTGGTTTATGGCCTTAATATACTACATAATTATTTAAGATGTTTATTAATAGAATGATAAAT  2063

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 2064  GTACAGAGTGACCTATAAGCATGACATACTTTTGCTTTCAGTAGTTTCATGTAAAGAAAAAAATTTGAAAATAG  2137

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 2138  TAATACCTGAGGACCCATGGGAATAATAGACACTGGGGAGGTAGGTTGGGGAGCGGGAGCAAGAGCTGAAAAAC  2211

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 2212  TACCTACTGGGGACTCTGCTCACTACCTGGGTGACAGGATCATCCATACCCCAAACCTCAACATCACACAGTAT  2285

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 2286  ACCCAGCTAACAGACCTGCCCATGTGTTCCCTGAATCTAAAATAAAAATCAAAAATTTTTTTAAAAAAGAAAAA  2359

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 2360  GACAATAGTATTACCCATGGGACAAAATTTGTATTATTAGCAAGAATCATTTTGTGTCTCATTTAGAAACAATT  2433

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 2434  TGACTTTTGCTCCAGTGTTTAAACTTTGACAAAAATGGTTTTGAATAGATCTTTATAACCTGATGCCATAAATA  2507

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 2508  CAAGATTCTCTGATACCTTCATTTAACATATCAATATTGGGCCTAAAACAGTATTCTGTAAAGCTTAAATTGGT  2581

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 2582  ATTAACTATGATCATCTTCATGTCTGTGATAGATAATAAACAAGGTCATACATACCTTACTAAACAATTTTGGT  2655

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 2656  TTTTCACCAACATTTTATTCTTTAAAAGATTTAGACTAACAGAATTATTTAGGATTTCGAGTCATGTGCTTTAT  2729

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 2730  TTAGCAAGTGAGTAAAAATATTGGAAGATTGAAGTATTTGCATAAAAAATCAAATGGTAGTGTTTTGTAATCTC  2803

Query 1258  --------------------------------------------------------------------------  1257
                                                                                      
Sbjct 2804  TATTGTATTTCCTATTAAGGTTTCATATATTACTTTCCCATTGTTCCTGAATTTGTTATCCTGTATATAAACAG  2877

Query 1258  --------------  1257
                          
Sbjct 2878  AAACATGGATGAGT  2891

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