Construct: ORF ccsbBroadEn_01659

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003526.1_s300c1, BRDN0000394095
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TERF1 (7013)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7013 TERF1 telomeric repeat binding fa... NM_003218.4 100% 100%
2 human 7013 TERF1 telomeric repeat binding fa... NM_017489.3 95.4% 95.4% 886_945del
3 human 7013 TERF1 telomeric repeat binding fa... XM_005251292.3 93.3% 93% 980_1069del
4 human 7013 TERF1 telomeric repeat binding fa... XM_005251291.3 89.3% 89.1% 886_945del;1040_1129del
5 human 7013 TERF1 telomeric repeat binding fa... XM_017013792.1 74.5% 74.4% 0_1ins316;2T>G;4_7delTTCA
6 human 7013 TERF1 telomeric repeat binding fa... XM_024447246.1 71.1% 71% (many diffs)
7 human 7013 TERF1 telomeric repeat binding fa... XM_011517582.3 66.6% 66.3% (many diffs)
8 human 7013 TERF1 telomeric repeat binding fa... XM_024447247.1 58.7% 58.5% 0_1ins465;515_604del
9 human 646127 LOC646127 telomeric repeat-binding fa... XR_002958817.1 41.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1323
ORF length:
1257
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGAGGATGTT TCCTCAGCGG CCCCGAGCCC GCGGGGCTGT GCGGATGGTA
121GGGATGCCGA CCCTACTGAG GAGCAGATGG CAGAAACAGA GAGAAACGAC GAGGAGCAGT
181TCGAATGCCA GGAACTGCTC GAGTGCCAGG TGCAGGTGGG GGCCCCCGAG GAGGAGGAGG
241AGGAGGAGGA GGACGCGGGC CTGGTGGCCG AGGCCGAGGC CGTGGCTGCC GGCTGGATGC
301TCGATTTCCT CTGCCTCTCT CTTTGCCGAG CTTTCCGCGA CGGCCGCTCC GAGGACTTCC
361GCAGGACCCG CAACAGCGCA GAGGCTATTA TTCATGGACT ATCCAGTCTA ACAGCTTGCC
421AGTTGAGAAC GATATACATA TGTCAGTTTT TGACAAGAAT TGCAGCAGGA AAAACCCTTG
481ATGCACAGTT TGAAAATGAT GAACGAATTA CACCCTTGGA ATCAGCCCTG ATGATTTGGG
541GTTCAATTGA AAAGGAACAT GACAAACTTC ATGAAGAAAT ACAGAATTTA ATTAAAATTC
601AGGCTATAGC TGTTTGTATG GAAAATGGCA ACTTTAAAGA AGCAGAAGAA GTCTTTGAAA
661GAATATTTGG TGATCCAAAT TCTCATATGC CTTTCAAAAG CAAATTGCTT ATGATAATCT
721CTCAGAAAGA TACATTTCAT TCCTTTTTTC AACACTTCAG CTACAACCAC ATGATGGAGA
781AAATTAAGAG TTATGTGAAT TATGTGCTAA GTGAAAAATC ATCAACCTTT CTAATGAAGG
841CAGCGGCAAA AGTAGTAGAA AGCAAAAGGA CAAGAACAAT AACTTCTCAA GATAAACCTA
901GTGGTAATGA TGTTGAAATG GAAACTGAAG CTAATTTGGA TACAAGAAAA AGGTCTCACA
961AGAATCTTTT CTTATCTAAG TTGCAACATG GAACCCAGCA ACAAGACCTT AATAAGAAAG
1021AAAGAAGAGT AGGAACTCCT CAAAGTACAA AAAAGAAAAA AGAAAGCAGA AGAGCCACTG
1081AAAGCAGAAT ACCTGTTTCA AAGAGTCAGC CGGTAACTCC TGAAAAACAT CGAGCTAGAA
1141AAAGACAGGC ATGGCTTTGG GAAGAAGACA AGAATTTGAG ATCTGGCGTG AGGAAATATG
1201GAGAGGGAAA CTGGTCTAAA ATACTGTTGC ATTATAAATT CAACAACCGG ACAAGTGTCA
1261TGTTAAAAGA CAGATGGAGG ACCATGAAGA AACTAAAACT GATTTCCTCA GACAGCGAAG
1321ACTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1381gcaacgaac

Download FASTA (ORF) (Full)

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