Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_01721
- Subject:
- XR_001780033.1
- Aligned Length:
- 2220
- Identities:
- 1358
- Gaps:
- 738
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTAGCTCTTCATGCCTTTCCAGGGAGGAAGCTGTGGACACACTGCAAAGTCAGGAAGGAACCGTCCCTGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCGCCCCAGCGCGGAGACCACCGTGGACCTCCAGGGATGGAAGGCCGCTCTGGCCCCAAGCGGAGCCTCTCGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGTAGACGGGCTCGAGGGAGTCCCTCTGGGCGCGGCGCCGCCGAGCGGCTCGATGCTCCGACCGGAAGTGCTC 222
Query 1 --------------------------------------------ATGGCGGCTGCCGCGGAGTGCGATGTGGTA 30
|||||||||.||||||||||||||||||||
Sbjct 223 TACACCGTCTGCCTCCCACCCGGCTCTCTGGTCCCGGCGGTAAGATGGCGGCTACCGCGGAGTGCGATGTGGTA 296
Query 31 ATGGCGGCGACCGAGCCGGAGCTGCTCGACGACCAAGAGGCGAAGAGGGAAGCAGAGACTTTCAAGGAACAAGG 104
|||||||||||||||||.||.|||||.||.|||.||||.||.||||||||||||||..|.||||||||||||||
Sbjct 297 ATGGCGGCGACCGAGCCTGAACTGCTGGAGGACGAAGACGCCAAGAGGGAAGCAGAATCCTTCAAGGAACAAGG 370
Query 105 AAATGCATACTATGCCAAGAAAGATTACAATGAAGCTTATAATTATTATACAAAAGCCATAGATATGTGTCCTA 178
.||||||||.|||||.|||||.||.|||||.|||||||||||.|||||.|||||||||||||||||||||||||
Sbjct 371 GAATGCATATTATGCTAAGAAGGACTACAACGAAGCTTATAACTATTACACAAAAGCCATAGATATGTGTCCTA 444
Query 179 AAAATGCTAGCTATTATGGTAATCGAGCAGCCACCTTGATGATGCTTGGAAGGTTCCGGGAAGCTCTTGGAGAT 252
|.|||||.||||||||.|||||||||||.|||||..||||||||||||||.|||||||||||||||||||||||
Sbjct 445 ACAATGCCAGCTATTACGGTAATCGAGCGGCCACACTGATGATGCTTGGACGGTTCCGGGAAGCTCTTGGAGAT 518
Query 253 GCACAACAGTCAGTGAGGTTGGATGACAGTTTTGTCCGGGGACATCTACGAGAGGGCAAGTGCCACCTCTCTCT 326
||.||.|||||.||||||||||||||||||||||||||||||||.||.|||||.|||||||||||||||||.||
Sbjct 519 GCGCAGCAGTCTGTGAGGTTGGATGACAGTTTTGTCCGGGGACACCTCCGAGAAGGCAAGTGCCACCTCTCACT 592
Query 327 GGGGAATGCCATGGCAGCATGTCGCAGCTTCCAGAGAGCCCTAGAACTGGATCATAAAAATGCTCAGGCACAAC 400
.||||||||.|||||.||||||||.||.|||||.|||||||||||||||||||||||||||||.||||||||.|
Sbjct 593 TGGGAATGCAATGGCGGCATGTCGTAGTTTCCAAAGAGCCCTAGAACTGGATCATAAAAATGCCCAGGCACAGC 666
Query 401 AAGAGTTCAAGAATGCTAATGCAGTCATGGAATATGAGAAAATAGCAGAAACAGATTTTGAGAAGCGAGATTTT 474
|.|||||||||||.||.|||||.||||||||.||||||||||||||||||...||||||||.|||||||||||.
Sbjct 667 AGGAGTTCAAGAACGCCAATGCCGTCATGGAGTATGAGAAAATAGCAGAAGTGGATTTTGAAAAGCGAGATTTC 740
Query 475 CGGAAGGTTGTTTTCTGCATGGACCGTGCCCTAGAATTTGCCCCTGCCTGCCATCGCTTCAAAATCCTCAAGGC 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||.||
Sbjct 741 CGGAAGGTTGTTTTCTGCATGGACCGTGCCCTAGAATTTGCCCCTGCCTGCCATCGATTCAAAATTCTCAAAGC 814
Query 549 AGAATGTTTAGCAATGCTGGGTCGTTATCCAGAAGCACAGTCTGTGGCTAGTGACATTCTACGAATGGATTCCA 622
||||||||||||||||||.|||||.||.|||||||||||||.||||||.|||||||||.|||||||||||||||
Sbjct 815 AGAATGTTTAGCAATGCTTGGTCGATACCCAGAAGCACAGTTTGTGGCCAGTGACATTTTACGAATGGATTCCA 888
Query 623 CCAATGCAGATGCTCTGTATGTACGAGGTCTTTGCCTTTATTACGAAGATTGTATTGAGAAGGCAGTTCAGTTT 696
|||||||.||||||||||||||.||.|||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 889 CCAATGCTGATGCTCTGTATGTCCGGGGTCTTTGCCTTTATTACGAAGATTGTATTGAGAAGGCAGTGCAGTTT 962
Query 697 TTCGTACAGGCTCTCAGGATGGCTCCTGACCACGAGAAGGCCTGCATTGCCTGCAGAAATGCCAAAGCACTCAA 770
||.||||||||||||||||||||||||||||||||||||||.||..|.||.||.||||||||||||||.||.||
Sbjct 963 TTTGTACAGGCTCTCAGGATGGCTCCTGACCACGAGAAGGCTTGTGTCGCTTGTAGAAATGCCAAAGCCCTTAA 1036
Query 771 AGCAAAGAAAGAAGATGGGAATAAAGCATTTAAGGAAGGAAATTACAAACTAGCATATGAACTGTACACAGAAG 844
|||.|||||.|||||||||||||||||.||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1037 AGCCAAGAAGGAAGATGGGAATAAAGCCTTTAAGGAAGGAAATTACAAGCTAGCATATGAACTGTACACAGAAG 1110
Query 845 CCCTGGGGATAGACCCCAACAATATAAAAACAAATGCTAAACTCTACTGTAATCGGGGTACGGTTAATTCCAAG 918
||.||||||||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CCTTGGGGATAGATCCCAACAACATAAAAACAAATGCTAAACTCTACTGTAATCGGGGTACGGTTAATTCCAAG 1184
Query 919 CTTAGGAAACTAGATGATGCAATAGAAGACTGCACAAATGCAGTGAAGCTTGATGACACTTACATAAAAGCCTA 992
||||||.||||.||.|||||.|||||||||||.||||||||.||||||||.||||||||||||||.||||||||
Sbjct 1185 CTTAGGCAACTGGAAGATGCCATAGAAGACTGTACAAATGCGGTGAAGCTCGATGACACTTACATCAAAGCCTA 1258
Query 993 CTTGAGAAGAGCTCAGTGTTACATGGACACAGAACAGTATGAAGAAGCAGTACGAGACTATGAAAAAGTATACC 1066
|.|||||||||||||||||||||||||||||||.||||.|||||||||.||.||.||||||||||||||.||.|
Sbjct 1259 CCTGAGAAGAGCTCAGTGTTACATGGACACAGAGCAGTTTGAAGAAGCCGTGCGGGACTATGAAAAAGTGTATC 1332
Query 1067 AGACAGAGAAAACAAAAGAACACAAACAGCTCCTAAAAAATGCGCAGCTGGAACTGAAGAAGAGTAAGAGGAAA 1140
||||.|||||||||||||||||||||||||||||.||.|||||.||||||||||||||||||||.|||||||||
Sbjct 1333 AGACGGAGAAAACAAAAGAACACAAACAGCTCCTTAAGAATGCACAGCTGGAACTGAAGAAGAGCAAGAGGAAA 1406
Query 1141 GATTACTACAAGATTCTAGGAGTGGACAAGAATGCCTCTGAGGACGAGATCAAGAAAGCTTATCGGAAACGGGC 1214
||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1407 GATTACTACAAGATCCTGGGAGTGGACAAGAATGCCTCTGAGGACGAGATCAAGAAAGCTTACCGGAAACGGGC 1480
Query 1215 CTTGATGCACCATCC----------------------------------------------------------- 1229
|||||||||||||||
Sbjct 1481 CTTGATGCACCATCCAGGTGAGCGCTGGAGGAGGTGCAGCAGAGCCCACAGCGCAGATGCAGTGGGCACCCAGG 1554
Query 1230 -------------------------------------------------------------------------- 1229
Sbjct 1555 AGATCGCTCTTCAGTGGGAAGGAGGGGGTGCTGGACTCCCTGTCCTACAGGCTGTGGGAGGTGCCACATTCCAA 1628
Query 1230 -------------------------------------------------------AGATCGGCATAGTGGAGCC 1248
|||||||||.|||||.|||
Sbjct 1629 ACTTGGACAATAATAGACTTTGTTTTCCTGTGTCCCTGGTTTCACTGAATCCTCTAGATCGGCACAGTGGGGCC 1702
Query 1249 AGTGCTGAGGTTCAGAAGGAGGAGGAGAAGAAGTTCAAGGAAGTTGGAGAGGCCTTTACTATCCTCTCTGATCC 1322
|||||.||.||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||||||||
Sbjct 1703 AGTGCCGAAGTTCAGAAGGAGGAGGAGAAGAAGTTTAAGGAAGTGGGAGAGGCCTTTACCATCCTCTCTGATCC 1776
Query 1323 CAAGAAAAAGACTCGCTATGACAGTGGACAGGACCTAGATGAGGAGGGCATGAATATGGGTGATTTTGATCCAA 1396
|||||||||||||||.||||||||||||||||||.|.|||||||||||||||||||||||.|||||||||.|||
Sbjct 1777 CAAGAAAAAGACTCGTTATGACAGTGGACAGGACTTGGATGAGGAGGGCATGAATATGGGCGATTTTGATGCAA 1850
Query 1397 ACAATATCTTCAAGGCATTCTTTGGCGGTCCTGGCGGCTTCAGCTTTGAAGCATCTGGTCCAGGGAATTTCTTT 1470
||||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||.|||||||||||||..
Sbjct 1851 ACAACATCTTCAAGGCATTCTTCGGTGGTCCTGGGGGCTTCAGCTTTGAAGCATCTGGCCCAGGGAATTTCTAC 1924
Query 1471 TTTCAATTTGGC-------------------------------------------------------------- 1482
|||||.||||||
Sbjct 1925 TTTCAGTTTGGCTAATGAAGGCCAACTACTTAAAACCCAGAAAATGCAGACTTGCTTGGTTTAACCATGAGTGT 1998
Query 1483 -------------------------------------------------------------------------- 1482
Sbjct 1999 GGACAGTTCACTTCCTCCATCATGTCCCTGTGTACTTAGAGCAGTTTCGTTTTCTCAGTCGGGTGCCCTGTGTC 2072
Query 1483 -------------------------------------------------------------------------- 1482
Sbjct 2073 TGTATGAGGGGTGAAGGAAAGGGGGCCAGTGCTGAGGACTAGGGAGGGAGGGAAGCCAGGGGTAGACAGGGAAG 2146
Query 1483 -------------------------------------------------------------------------- 1482
Sbjct 2147 CAGGCAGCTTGTGAATTTTTGTTGTATTGTTTAACTTTATTAAAAAAGAAAAAGAATAAAATGTTTTGACCGTT 2220
