Construct: ORF ccsbBroadEn_01721
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004087.1_s300c1, BRDN0000396600
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DNAJC7 (7266)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | NM_003315.4 | 100% | 100% | |
| 2 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | NM_001144766.2 | 88.6% | 88.6% | 0_1ins168 |
| 3 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_011525167.3 | 88.6% | 88.6% | 0_1ins168 |
| 4 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_011525168.3 | 88.6% | 88.6% | 0_1ins168 |
| 5 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_011525169.3 | 88.6% | 88.6% | 0_1ins168 |
| 6 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_017024994.2 | 88.6% | 88.6% | 0_1ins168 |
| 7 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XR_001752602.2 | 78.6% | 1_27del;1037_1136del;1610_1885del | |
| 8 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XR_001752603.2 | 67.7% | (many diffs) | |
| 9 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | NR_029431.1 | 66.4% | 1_281del;356_357ins89;1675_2007del | |
| 10 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | NM_019795.4 | 91.6% | 97.1% | (many diffs) |
| 11 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | XM_011249154.2 | 88.1% | 91.9% | (many diffs) |
| 12 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | XR_001780034.1 | 70.9% | (many diffs) | |
| 13 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | XR_001780033.1 | 61.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1548
- ORF length:
- 1482
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCTGCCGCG GAGTGCGATG TGGTAATGGC GGCGACCGAG CCGGAGCTGC 121 TCGACGACCA AGAGGCGAAG AGGGAAGCAG AGACTTTCAA GGAACAAGGA AATGCATACT 181 ATGCCAAGAA AGATTACAAT GAAGCTTATA ATTATTATAC AAAAGCCATA GATATGTGTC 241 CTAAAAATGC TAGCTATTAT GGTAATCGAG CAGCCACCTT GATGATGCTT GGAAGGTTCC 301 GGGAAGCTCT TGGAGATGCA CAACAGTCAG TGAGGTTGGA TGACAGTTTT GTCCGGGGAC 361 ATCTACGAGA GGGCAAGTGC CACCTCTCTC TGGGGAATGC CATGGCAGCA TGTCGCAGCT 421 TCCAGAGAGC CCTAGAACTG GATCATAAAA ATGCTCAGGC ACAACAAGAG TTCAAGAATG 481 CTAATGCAGT CATGGAATAT GAGAAAATAG CAGAAACAGA TTTTGAGAAG CGAGATTTTC 541 GGAAGGTTGT TTTCTGCATG GACCGTGCCC TAGAATTTGC CCCTGCCTGC CATCGCTTCA 601 AAATCCTCAA GGCAGAATGT TTAGCAATGC TGGGTCGTTA TCCAGAAGCA CAGTCTGTGG 661 CTAGTGACAT TCTACGAATG GATTCCACCA ATGCAGATGC TCTGTATGTA CGAGGTCTTT 721 GCCTTTATTA CGAAGATTGT ATTGAGAAGG CAGTTCAGTT TTTCGTACAG GCTCTCAGGA 781 TGGCTCCTGA CCACGAGAAG GCCTGCATTG CCTGCAGAAA TGCCAAAGCA CTCAAAGCAA 841 AGAAAGAAGA TGGGAATAAA GCATTTAAGG AAGGAAATTA CAAACTAGCA TATGAACTGT 901 ACACAGAAGC CCTGGGGATA GACCCCAACA ATATAAAAAC AAATGCTAAA CTCTACTGTA 961 ATCGGGGTAC GGTTAATTCC AAGCTTAGGA AACTAGATGA TGCAATAGAA GACTGCACAA 1021 ATGCAGTGAA GCTTGATGAC ACTTACATAA AAGCCTACTT GAGAAGAGCT CAGTGTTACA 1081 TGGACACAGA ACAGTATGAA GAAGCAGTAC GAGACTATGA AAAAGTATAC CAGACAGAGA 1141 AAACAAAAGA ACACAAACAG CTCCTAAAAA ATGCGCAGCT GGAACTGAAG AAGAGTAAGA 1201 GGAAAGATTA CTACAAGATT CTAGGAGTGG ACAAGAATGC CTCTGAGGAC GAGATCAAGA 1261 AAGCTTATCG GAAACGGGCC TTGATGCACC ATCCAGATCG GCATAGTGGA GCCAGTGCTG 1321 AGGTTCAGAA GGAGGAGGAG AAGAAGTTCA AGGAAGTTGG AGAGGCCTTT ACTATCCTCT 1381 CTGATCCCAA GAAAAAGACT CGCTATGACA GTGGACAGGA CCTAGATGAG GAGGGCATGA 1441 ATATGGGTGA TTTTGATCCA AACAATATCT TCAAGGCATT CTTTGGCGGT CCTGGCGGCT 1501 TCAGCTTTGA AGCATCTGGT CCAGGGAATT TCTTTTTTCA ATTTGGCTAC CCAACTTTCT 1561 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac