Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_01821
- Subject:
- NM_001260488.1
- Aligned Length:
- 2157
- Identities:
- 1398
- Gaps:
- 549
Alignment
Query 1 ---------------------------------------ATGACCACGTTGAAGGAGGCAGTGACCTTCAAGGA 35
||.| ||.||||||||||||||||||||||
Sbjct 1 ATGATAAAGAGAAGCAAAGTACTTGTATTCTGTTCAAAGATTA------TGGAGGAGGCAGTGACCTTCAAGGA 68
Query 36 CGTGGCTGTGGTCTTCACTGAGGAAGAGCTGAGGCTGCTGGACCTTGCCCAGAGGAAACTGTACCGAGAAGTGA 109
.|||||||||||||||||||||||.||||||.||||||||||||.||||||||||||.|||||||||||.||||
Sbjct 69 TGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTGTACCGAGATGTGA 142
Query 110 TGCTGGAGAACTTCAGGAACCTGCTCTCAGTGGGGCATCAATCACTCCACAGAGATACTTTCCACTTCCTAAAG 183
|||||||||||||||||||||||||||||||||||||||||.|..|||||..||||||||.|||||||||||.|
Sbjct 143 TGCTGGAGAACTTCAGGAACCTGCTCTCAGTGGGGCATCAACCGTTCCACCAAGATACTTGCCACTTCCTAAGG 216
Query 184 GAAGAAAAGTTTTGGATGATGGAGACAGCAACCCAAAGAGAAGGGAATTTAGGAGGCAAGATCCAAATGGAGAT 257
||||||||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||..|||.|
Sbjct 217 GAAGAAAAGTTTTGGATGATGGGGACAGCAACCCAAAGAGAAGGGAATTCAGGAGGCAAGATCCAAACTGAGTT 290
Query 258 GGAGACTGTTTCAGAATCAGGAACACATGAAGGCTTGTTCAGTCATCAAACCTGGGAACAAATTTCAAGTGACT 331
||||.|||||.|||||.|||||.|||||||||..|.||.|.|.||.||||.|||||||||||||.|||..||||
Sbjct 291 GGAGTCTGTTCCAGAAGCAGGAGCACATGAAGAGTGGTCCTGCCAGCAAATCTGGGAACAAATTGCAAAAGACT 364
Query 332 TAACCAGGTTTCAAGACTCCATGGTAAACAGCTTTCAGTTCTCCAAACAAGATGATATGCCCTGCCAGGTTGAT 405
|||||||||.|||.|||||.||..||||.|.||.||||||||...||.|.|.||||.|.||||.|||||||||.
Sbjct 365 TAACCAGGTCTCAGGACTCTATCATAAATAACTCTCAGTTCTTTGAAAATGGTGATGTCCCCTCCCAGGTTGAA 438
Query 406 GCAGGACTATCTATAATTCACGTAAGACAGAAACCTTCTGAGGGTAGGACGTGTAAAAAGTCCTTTAGTGATGT 479
|||||||||.|.|.||||||...|.|||||||||||||..|||||.|||.|||||||.|||||||.||||||||
Sbjct 439 GCAGGACTACCCACAATTCATACAGGACAGAAACCTTCCCAGGGTGGGAAGTGTAAACAGTCCTTCAGTGATGT 512
Query 480 CTCCGTCCTTGATCTTCATCAACAACTACAGTCAAGAGAGAAGTCTCATACATGTGATGAATGTGGAAAGAGTT 553
..||.||.|||||||||.|||.||..||.|.|||..||||||||||.|||||||||||||.||||||||.||..
Sbjct 513 TCCCATCTTTGATCTTCCTCAGCAGTTATACTCAGAAGAGAAGTCTTATACATGTGATGAGTGTGGAAAAAGCA 586
Query 554 TCTGTTATAGCTCAGCTCTTCGTATTCATCAGAGAGTTCACATGGGGGAGAAACTCTATAATTGTGATGTGTGT 627
|||||||.|.|||||||||||.|.|||||||||||||.|||.||||.||||||||||.||..||||||||||||
Sbjct 587 TCTGTTACATCTCAGCTCTTCATGTTCATCAGAGAGTCCACGTGGGAGAGAAACTCTTTATGTGTGATGTGTGT 660
Query 628 GGTAAGGAATTCAATCAGAGCTCACATCTGCAAATTCATCAGAGAATCCACACTGGAGAGAAACCATTCAAATG 701
||.||||||||.|.|||.||||||||||||||||.||||||||||.||||||||||||||||||||||||||||
Sbjct 661 GGCAAGGAATTTAGTCAAAGCTCACATCTGCAAACTCATCAGAGAGTCCACACTGGAGAGAAACCATTCAAATG 734
Query 702 TGAGCAGTGTGGGAAAGGCTTTAGTCGTAGATCAGGACTTTATGTTCATCGTAAATTACACACAGGAGTGAAAC 775
||||||.|||||||||||.||.|||||||||||||.||||.|||||||||||||||||||||||||||.|||||
Sbjct 735 TGAGCAATGTGGGAAAGGTTTCAGTCGTAGATCAGCACTTAATGTTCATCGTAAATTACACACAGGAGAGAAAC 808
Query 776 CTCATATTTGTGAGAAATGTGGGAAGGCCTTCATTCATGATTCCCAGCTTCAGGAACATCAAAGAATCCATACT 849
||.|.|||||||||..||||||||||||||||||||||||||||||||||.||||||||.|.||||||||||||
Sbjct 809 CTTACATTTGTGAGGCATGTGGGAAGGCCTTCATTCATGATTCCCAGCTTAAGGAACATAAGAGAATCCATACT 882
Query 850 GGGGAGAAGCCATTCAAATGTGATATATGTTGTAAGAGCTTCCGTAGTAGAGCAAATCTTAATAGGCATTCCAT 923
||||||||.|||||||||||||||||||||.||||||.||||..|..|||..|||..|||||.||.||||||||
Sbjct 883 GGGGAGAAACCATTCAAATGTGATATATGTGGTAAGACCTTCTATTTTAGGTCAAGACTTAAGAGCCATTCCAT 956
Query 924 GGTTCACATGCGAGAGAAACCATTCAGATGTGATACATGTGGTAAGAGCTTTGGTCTGAAATCAGCACTTAATA 997
||||||||...||||.||||||||.||.|||||||||||||.||||||||||..||.||.||||||||||||||
Sbjct 957 GGTTCACACAGGAGAAAAACCATTTAGGTGTGATACATGTGATAAGAGCTTTCATCAGAGATCAGCACTTAATA 1030
Query 998 GTCATCGCATGGTCCACACAGGAGAGAAACGGTACAAATGTGAGGAATGTGGAAAACGCTTCATTTATAGGCAA 1071
|.|||.||||||||||||||||||||||||.|||||.|||||||.|.|||||||||.||||.|||..|||||.|
Sbjct 1031 GGCATTGCATGGTCCACACAGGAGAGAAACCGTACAGATGTGAGCAGTGTGGAAAAGGCTTTATTGGTAGGCTA 1104
Query 1072 GATCTTTATAAGCATCAGATAGACCACACAGGGGAGAAGCCATATAATTGTAAAGAATGTGGAAAGAGCTTCAG 1145
|||.||||||||||||||.|.|.|||||||||.|||||.|||||||||||||||||||||||.|||||||||||
Sbjct 1105 GATTTTTATAAGCATCAGGTGGTCCACACAGGAGAGAAACCATATAATTGTAAAGAATGTGGGAAGAGCTTCAG 1178
Query 1146 ATGGGCCTCAGGTCTTTCAAGACATGTGCGAGTCCACAGTGGAGAGACAACATTCAAATGTGAAGAATGTGGGA 1219
||||.|||||.|.||||..|..|||..||||||||||||||||||.|.||..||||||||||||||||||||.|
Sbjct 1179 ATGGTCCTCATGCCTTTTGAACCATCAGCGAGTCCACAGTGGAGAAAAAAGCTTCAAATGTGAAGAATGTGGAA 1252
Query 1220 AGGGATTTTATACAAATTCACAACGTTATTCTCACCAGAGAGCGCACAGTGGAGAAAAGCCATATAGATGTGAG 1293
||||||||||||||||||||||||..|.|||.||.||||||.|.||||||||.|||||||||||||.|||||||
Sbjct 1253 AGGGATTTTATACAAATTCACAACTGTCTTCCCATCAGAGATCCCACAGTGGTGAAAAGCCATATAAATGTGAG 1326
Query 1294 GAGTGTGGGAAGGGCTACAAAAGGAGGTTGGATCTTGACTTTCATCAGAGGGTCCACAGAGGAGAGAAACCCTA 1367
||||||||||||||||| ||
Sbjct 1327 GAGTGTGGGAAGGGCTA-----------TG-------------------------------------------- 1345
Query 1368 TAATTGTAAGGAATGTGGGAAGAGCTTTGGCTGGGCCTCGTGTCTTTTGAATCATCAGAGAATCCACAGTGGAG 1441
Sbjct 1346 -------------------------------------------------------------------------- 1345
Query 1442 AAAAACCATTTAAATGTGAAGAATGTGGGAAAAGATTTACTCAGAATTCACAACTTTATACCCATCGTAGAGTC 1515
||||
Sbjct 1346 ------------------------------------TTAC---------------------------------- 1349
Query 1516 CACAGTGGAGAAAAACCATTCAAATGTGAAGAGTGTGGGAAAAGATTTACTCAGAATTCACAACTTTATTCTCA 1589
Sbjct 1350 -------------------------------------------------------------------------- 1349
Query 1590 TCGCAGAGTCCACACTGGAGTAAAGCCATACAAATGTGAAGAGTGTGGGAAGGGCTTCAACAGTAAGTTTAATC 1663
|||||||||||
Sbjct 1350 ---------------------------------------------------------------TAAGTTTAATC 1360
Query 1664 TTGACATGCACCAGAGGGTCCACACCGGAGAGAGACCTTATAATTGTAAAGAATGTGGGAAGAGCTTTAGCCGG 1737
|||||.|||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||.||||||||||
Sbjct 1361 TTGACTTGCACCAGAGGGTCCACACGGGAGAGAGACCTTATAATTGTAAGGAATGTGGGAAGAACTTTAGCCGG 1434
Query 1738 GCCTCAAGTATTTTGAATCATAAGAGACTCCATGGTGATGAAAAGCCATTCAAATGTGAAGAGTGTGGGAAGAG 1811
|||||||||||||||||||||||||||||||
Sbjct 1435 GCCTCAAGTATTTTGAATCATAAGAGACTCC------------------------------------------- 1465
Query 1812 ATTTACTGAGAATTCACAGCTTCATTCCCATCAGAGGGTTCACACTGGGGAAAAGCCATACAAATGTGAGAAGT 1885
|||| ||| |.||||.||||.||
Sbjct 1466 ----ACTG-------------------CCA------------------GAAAAAACCATTCA------------ 1486
Query 1886 GTGGAAAGAGCTTCAGATGGGCCTCAACTCATCTAACCCATCAGAGACTCCACAGTAGAGAAAAACTACTTCAA 1959
||
Sbjct 1487 ------------------------------------------------------------------------AA 1488
Query 1960 TGTGAGGACTGTGGGAAGAGCATTGTGCACAGTTCATGCCTTAAAGACCAACAAAGAGACCAAAGTGGAGAGAA 2033
||||||||||||||.|||||..||||.|||||..|||.||.|||||||||.|..||||||.|.|||||.||.||
Sbjct 1489 TGTGAGGACTGTGGAAAGAGGCTTGTACACAGGACATACCGTAAAGACCAGCCGAGAGACTATAGTGGGGAAAA 1562
Query 2034 AACATCTAAATGTGAGGACTGTGGGAAGCGCTACAAGAGGCGCTTGAATCTTGATACGCTTTTGTCATTATTTT 2107
..||||.|||||||||||.|||||||..|||||||||||||||||||||||.||||..|||||.|||||||||.
Sbjct 1563 CCCATCCAAATGTGAGGATTGTGGGAGACGCTACAAGAGGCGCTTGAATCTGGATATACTTTTATCATTATTTC 1636
Query 2108 TAAATGACACA 2118
|||||||||||
Sbjct 1637 TAAATGACACA 1647