Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01821
Subject:
NM_001297588.1
Aligned Length:
2191
Identities:
1550
Gaps:
413

Alignment

Query    1  ------------------------------------------------------------------ATGACCAC  8
                                                                              ||||||||
Sbjct    1  ATGATTTCACCTTCACTTGAACTGCTTCATTCAGGACTCTGCAAATTCCCTGAAGTAGAAGGAAAAATGACCAC  74

Query    9  GTTGAAGGAGGCAGTGACCTTCAAGGACGTGGCTGTGGTCTTCACTGAGGAAGAGCTGAGGCTGCTGGACCTTG  82
            .||.||.|||||||||||.||||||||.|||||||||||||||||||||||.||||||.||||||||||||.||
Sbjct   75  ATTCAAAGAGGCAGTGACATTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTG  148

Query   83  CCCAGAGGAAACTGTACCGAGAAGTGATGCTGGAGAACTTCAGGAACCTGCTCTCAGTGGGGCATCAATCACTC  156
            ||||||||||.|||||||||||.||||||||.||||||||||||||||||||||||||.|||.|||||.||.||
Sbjct  149  CCCAGAGGAAGCTGTACCGAGATGTGATGCTAGAGAACTTCAGGAACCTGCTCTCAGTAGGGAATCAACCATTC  222

Query  157  CACAGAGATACTTTCCACTTCCTAAAGGAA-GAAAAGTTTTGGATGATGGAGACAGCAACCCAAAGAGAAGGGA  229
            |||..||||||||||||||| ||.|.|||| |||||||||||||.||||.|||||.|||.||||||||||||||
Sbjct  223  CACCAAGATACTTTCCACTT-CTTAGGGAAGGAAAAGTTTTGGAAGATGAAGACAACAAGCCAAAGAGAAGGGA  295

Query  230  ATTTAGGAGGCAAGATCCAAATGGAGATGGAGACTGTTTCAGAATCAGGAACACATGAAGGCTTGTTCAGTCAT  303
            |||.||||||||||||||||||.|||||||||||||||.|||||.|||||.|||||||||..|.||.|.||||.
Sbjct  296  ATTCAGGAGGCAAGATCCAAATTGAGATGGAGACTGTTCCAGAAGCAGGACCACATGAAGAGTGGTCCTGTCAG  369

Query  304  CAAACCTGGGAACAAATTTCAAGTGACTTAACCAGGTTTCAAGACTCCAT--GGTAAACAGCTTTCAGTTCTCC  375
            ||||..||||||||||||.||||||||.|||||||||.||||.|||||||  ||  |||||||.||||||||.|
Sbjct  370  CAAATATGGGAACAAATTGCAAGTGACCTAACCAGGTCTCAAAACTCCATAAGG--AACAGCTCTCAGTTCTTC  441

Query  376  AAACAAGATGATATGCCCTGCCAGGTTGATGCAGGACTATCTATAATTCACGTAAGACAGAAACCTT-CTGAGG  448
            |||.|||.||||.|.|||||||||.||||.|||.||||||||||||.||||||...||||||||||| |.|..|
Sbjct  442  AAAGAAGGTGATGTCCCCTGCCAGATTGAGGCAAGACTATCTATAAGTCACGTGCAACAGAAACCTTACCGTTG  515

Query  449  GTAGGACGTGTAAAAAGTCCTTTAGTGATGTCTCCGTCCTTGATCTTCATCAACAACTACAGTCAAGAGAGAAG  522
            ..|.|| .||||||.|||||||.||||||||.||.|||.|||||||||||||||||..|||.|||.|||||||.
Sbjct  516  TAATGA-ATGTAAACAGTCCTTCAGTGATGTTTCTGTCTTTGATCTTCATCAACAATCACACTCAGGAGAGAAA  588

Query  523  TCTCATACATGTGATGAATGTGGAAAGAGTTTCTGTTATAGCTCAGCTCTTCGTATTCATCAGAGAGTTCACAT  596
            |||||||||||||.|||.||||||||.||.||||||||.|||.||||.||||.|||||||||||||||.||.||
Sbjct  589  TCTCATACATGTGGTGAGTGTGGAAAAAGCTTCTGTTACAGCCCAGCCCTTCATATTCATCAGAGAGTCCATAT  662

Query  597  GGGGGAGAAACTCTATAATTGTGATGTGTGTGGTAAGGAATTCAATCAGAGCTCACATCTGCAAATTCATCAGA  670
            |||.||.|||..||||||.|||||||||||||||||||||||.||||||||||||||||||||||.||||||||
Sbjct  663  GGGAGAAAAATGCTATAAGTGTGATGTGTGTGGTAAGGAATTTAATCAGAGCTCACATCTGCAAACTCATCAGA  736

Query  671  GAATCCACACTGGAGAGAAACCATTCAAATGTGAGCAGTGTGGGAAAGGCTTTAGTCGTAGATCAGGACTTTAT  744
            ||.||||.|||||||||||||||||||||||||.|||.||||||||||||||...|.|||||||||.||||.||
Sbjct  737  GAGTCCATACTGGAGAGAAACCATTCAAATGTGGGCAATGTGGGAAAGGCTTCCATAGTAGATCAGCACTTAAT  810

Query  745  GTTCATCGTAAATTACACACAGGAGTGAAACCTCATATTTGTGAGAAATGTGGGAAGGCCTTCATTCATGATTC  818
            ||||||.|.|||||.||||||||||.|||||||.|||.|||||||.||||||||||.|||||||||||||||||
Sbjct  811  GTTCATTGCAAATTGCACACAGGAGAGAAACCTTATAATTGTGAGGAATGTGGGAAAGCCTTCATTCATGATTC  884

Query  819  CCAGCTTCAGGAACATCAAAGAATCCATACTGGGGAGAAGCCATTCAAATGTGATATATGTTGTAAGAGCTTCC  892
            .||||||||.||||||||.||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct  885  ACAGCTTCAAGAACATCAGAGAATCCATACTGGGGAGAAGCCATTCAAATGTGATATATGTGGTAAGAGCTTCC  958

Query  893  GTAGTAGAGCAAATCTTAATAGGCATTCCATGGTTCACATGCGAGAGAAACCATTCAGATGTGATACATGTGGT  966
            ||..||||.|||..|||||||||||||||||||||||||...||||.||||||||||||||||||||||||||.
Sbjct  959  GTGTTAGATCAAGACTTAATAGGCATTCCATGGTTCACACAGGAGAAAAACCATTCAGATGTGATACATGTGGC  1032

Query  967  AAGAGCTTTGGTCTGAAATCAGCACTTAATAGTCATCGCATGGTCCACACAGGAGAGAAACGGTACAAATGTGA  1040
            ||||.||||.|||.||.|||||||||||||||||||..|||||||||||.||.||||||.|..|||||||||||
Sbjct 1033  AAGAACTTTCGTCAGAGATCAGCACTTAATAGTCATTCCATGGTCCACATAGAAGAGAAGCCATACAAATGTGA  1106

Query 1041  GGAATGTGGAAAACGCTTCATTTATAGGCAAGATCTTTATAAGCATCAGATAGACCACACAGGGGAGAAGCCAT  1114
            |.|||||||||||.|||||||||.|||||.||||.|||.||||||||||||.|.|||||||||.|||||.||||
Sbjct 1107  GCAATGTGGAAAAGGCTTCATTTGTAGGCGAGATTTTTGTAAGCATCAGATGGTCCACACAGGAGAGAAACCAT  1180

Query 1115  ATAATTGTAAAGAATGTGGAAAGAGCTTCAGATGGGCCTCAGGTCTTTCAAGACATGTGCGAGTCCACAGTGGA  1188
            |||||||||||||||||||.||||.||||||||||.|||||.||||||..|..|||..||.|||||||||||||
Sbjct 1181  ATAATTGTAAAGAATGTGGGAAGACCTTCAGATGGTCCTCATGTCTTTTGAACCATCAGCAAGTCCACAGTGGA  1254

Query 1189  GAGACAACATTCAAATGTGAAGAATGTGGGAAGGGATTTTATACAAATTCACAACGTTATTCTCACCAGAGAGC  1262
            .|.|.|.|.|||||||||||||||||||||||||||||||||||||||||||.|||.|.|||.||.||||||.|
Sbjct 1255  CAAAAATCCTTCAAATGTGAAGAATGTGGGAAGGGATTTTATACAAATTCACGACGATCTTCCCATCAGAGATC  1328

Query 1263  GCACAGTGGAGAAAAGCCATATAGATGTGAGGAGTGTGGGAAGGGCTACAAAAGGAGGTTGGATCTTGACTTTC  1336
            .||||.|||||||||||||||||..||||||||||||||.||||.|||.||||||||||||||||||||.||||
Sbjct 1329  CCACAATGGAGAAAAGCCATATAACTGTGAGGAGTGTGGTAAGGACTATAAAAGGAGGTTGGATCTTGAGTTTC  1402

Query 1337  ATCAGAGGGTCCACAGAGGAGAGAAACCCTATAATTGTAAGGAATGTGGGAAGAGCTTTGGCTGGGCCTCGTGT  1410
            |.|||||||||||||..||.||||.||||||||||||||||||||||||.||||||||||||||||||||.|||
Sbjct 1403  ACCAGAGGGTCCACACGGGTGAGAGACCCTATAATTGTAAGGAATGTGGCAAGAGCTTTGGCTGGGCCTCCTGT  1476

Query 1411  CTTTTGAATCATCAGAGAATCCACAGTGGAGAAAAACCATTTAAATGTGAAGAATGTGGGAAAAGATTTACTCA  1484
            ||||||||.||||||                                                           
Sbjct 1477  CTTTTGAAACATCAG-----------------------------------------------------------  1491

Query 1485  GAATTCACAACTTTATACCCATCGTAGAGTCCACAGTGGAGAAAAACCATTCAAATGTGAAGAGTGTGGGAAAA  1558
                                     |||.||||||||||.||||||||.||||||||||||||||||||.||.|
Sbjct 1492  -------------------------AGACTCCACAGTGGGGAAAAACCTTTCAAATGTGAAGAGTGTGGAAAGA  1540

Query 1559  GATTTACTCAGAATTCACAACTTTATTCTCATCGCAGAGTCCACACTGGAGTAAAGCCATACAAATGTGAAGAG  1632
            ||||||||||||.||||||||||.||||.||||..|.|..|||.|||||||.|||||.||||||||||||..||
Sbjct 1541  GATTTACTCAGAGTTCACAACTTCATTCCCATCAGACATGCCATACTGGAGAAAAGCTATACAAATGTGAGCAG  1614

Query 1633  TGTGGGAAGGGCTTCAACAGTAAGTTTAATCTTGACATGCACCAGAGGGTCCACACCGGAGAGAGACCTTATAA  1706
            ||||.||||||.|.|||||||||.||||||||||||||||||||||||||||||...||||||.||||.|||||
Sbjct 1615  TGTGAGAAGGGGTACAACAGTAAATTTAATCTTGACATGCACCAGAGGGTCCACGGGGGAGAGCGACCCTATAA  1688

Query 1707  TTGTAAAGAATGTGGGAAGAGCTTTAGCCGGGCCTCAAGTATTTTGAATCATAAGAGACTCCATGGTGATGAAA  1780
            ||||||.||||||||.|||||||||.||.||||.|||.||.|||||||.|||.||||||||||..|||..||||
Sbjct 1689  TTGTAAGGAATGTGGAAAGAGCTTTGGCTGGGCTTCATGTCTTTTGAAACATCAGAGACTCCACAGTGGAGAAA  1762

Query 1781  AGCCATTCAAATGTGAAGAGTGTGGGAAGAGATTTACTGAGAATTCACAGCTTCATTCCCATCAG--AGGGTTC  1852
            |||||||.||||.||  ||||||||||||||||.||||.||||||||||||||||||..||||||  ||   ||
Sbjct 1763  AGCCATTGAAATCTG--GAGTGTGGGAAGAGATCTACTCAGAATTCACAGCTTCATTTACATCAGTAAG---TC  1831

Query 1853  ACACTGGG-GAAAAGCCATACAAATGTGAGAAGTGTGGAAAGAGCTTCAGATGGGCCTCAACTCATCTAACCCA  1925
            ....|||| |||||||||||                                                      
Sbjct 1832  TATGTGGGAGAAAAGCCATA------------------------------------------------------  1851

Query 1926  TCAGAGACTCCACAGTAGAGAAAAACTACTTCAATGTGAGGACTGTGGGAAGAGCATTGTGCACAGTTCATGCC  1999
                                                                                      
Sbjct 1852  --------------------------------------------------------------------------  1851

Query 2000  TTAAAGACCAACAAAGAGACCAAAGTGGAGAGAAAACATCTAAATGTGAGGACTGTGGGAAGCGCTACAAGAGG  2073
                                                                                      
Sbjct 1852  --------------------------------------------------------------------------  1851

Query 2074  CGCTTGAATCTTGATACGCTTTTGTCATTATTTTTAAATGACACA  2118
                                                         
Sbjct 1852  ---------------------------------------------  1851

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.