Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01821
Subject:
NM_006300.4
Aligned Length:
2121
Identities:
1220
Gaps:
702

Alignment

Query    1  ATGACCACGTTGAAGGAGGCAGTGACCTTCAAGGACGTGGCTGTGGTCTTCACTGAGGAAGAGCTGAGGCTGCT  74
            ||||||||.||.|||||||||||||||||||||||.|||||||||.|||||||||||||.||.|||.||||.||
Sbjct    1  ATGACCACATTCAAGGAGGCAGTGACCTTCAAGGATGTGGCTGTGTTCTTCACTGAGGAGGAACTGGGGCTACT  74

Query   75  GGACCTTGCCCAGAGGAAACTGTACCGAGAAGTGATGCTGGAGAACTTCAGGAACCTGCTCTCAGTGGGGCATC  148
            |||||.||||||||||||.|||||||.|||.||||||||.||||||||||.|||||||||.|||||||||||||
Sbjct   75  GGACCCTGCCCAGAGGAAGCTGTACCAAGACGTGATGCTTGAGAACTTCACGAACCTGCTGTCAGTGGGGCATC  148

Query  149  AATCACTCCACAGAGATACTTTCCACTTCCTAAAGGAAGAAAAGTTTTGGATGATGGAGACAGCAACCCAAAGA  222
            ||.||.|||||      .|||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AACCATTCCAC------CCTTTCCACTTCCTAAGGGAAGAAAAGTTTTGGATGATGGAGACAGCAACCCAAAGA  216

Query  223  GAAGGGAATTTAGGAGGCAAGATCCAAATGGAGATGGAGACTGTTTCAGAATCAGGAACACATGAAGGCTTG--  294
            |||||.||||.|||.||||                  |||||.||.|.|||.|||||.|||||||||.| ||  
Sbjct  217  GAAGGAAATTCAGGCGGCA------------------AGACTATTGCGGAAGCAGGACCACATGAAGAC-TGCC  271

Query  295  -TTCAGTCATCAAACCTGGGAACAAATTTCAAGTGACTTAACCAGGTTTCAAGACTCCATGGTAAACAGCTTTC  367
             ||  |.||.||||.|||||||||||.|.||||||||||||||..||.||||||||||||..||||.|..|.||
Sbjct  272  CTT--GCCAGCAAATCTGGGAACAAACTGCAAGTGACTTAACCCAGTCTCAAGACTCCATCATAAATAATTCTC  343

Query  368  AGTTCTCCAAACAAGATGATATGCCCTGCCAGGTTGATGCAGGACTATCTATAATTCACGTAAGACAGAAACCT  441
            |.||||...||||||.||||.|.||||.|||||||||.||||||||||||||||||||...|.|||||||||||
Sbjct  344  ACTTCTTTGAACAAGGTGATGTCCCCTCCCAGGTTGAGGCAGGACTATCTATAATTCATACAGGACAGAAACCT  417

Query  442  TCTGAGGGTAGGACGTGTAAAAAGTCCTTTAGTGATGTCTCCGTCCTTGATCTTCATCAACAACTACAGTCAAG  515
            ||..||..|.|||.|||||||.|||||||.||||||||..||.||.||||||.||.|||.||..|.||.|||.|
Sbjct  418  TCACAGAATGGGAAGTGTAAACAGTCCTTCAGTGATGTTGCCATCTTTGATCCTCCTCAGCAGTTCCACTCAGG  491

Query  516  AGAGAAGTCTCATACATGTGATGAATGTGGAAAGAGTTTCTGTTATAGCTCAGCTCTTCGTATTCATCAGAGAG  589
            ||||||||||||||||||..||||.||||||||.||.||||||||.|.||||||||||||||||||.|||||||
Sbjct  492  AGAGAAGTCTCATACATGCAATGAGTGTGGAAAAAGCTTCTGTTACATCTCAGCTCTTCGTATTCACCAGAGAG  565

Query  590  TTCACATGGGGGAGAAACTCTATAATTGTGATGTGTGTGGTAAGGAATTCAATCAGAGCTCACATCTGCAAATT  663
            |||||.||.|.||||||||||.|||.|||||..||.|||||||||||||||.||||||||||..||||||||.|
Sbjct  566  TTCACTTGAGAGAGAAACTCTCTAAGTGTGACATGCGTGGTAAGGAATTCAGTCAGAGCTCATGTCTGCAAACT  639

Query  664  CATCAGAGAATCCACACTGGAGAGAAACCATTCAAATGTGAGCAGTGTGGGAAAGGCTTTAGTCGTAGATCAGG  737
            |.|.|||||.||||||||||||||||||||||||||||||||||.||||||||||||||.||..|||||.|...
Sbjct  640  CGTGAGAGAGTCCACACTGGAGAGAAACCATTCAAATGTGAGCAATGTGGGAAAGGCTTCAGATGTAGAGCGAT  713

Query  738  ACTTTATGTTCATCGTAAATTACACACAGGAGTGAAACCTCATATTTGTGAGAAATGTGGGAAGGCCTTCATTC  811
            ||||.|.|||||..|.||||||||||||||||.|||||||.|||||||||||||||||||||.|||||||||||
Sbjct  714  ACTTCAAGTTCACTGCAAATTACACACAGGAGAGAAACCTTATATTTGTGAGAAATGTGGGAGGGCCTTCATTC  787

Query  812  ATGATTCCCAGCTTCAGGAACATCAAAGAATCCATACTGGGGAGAAGCCATTCAAATGTGATATATGTTGTAAG  885
            |.||||.||||||||||.|||||||.|.|||.|||||||||||||||||.|||||||||||.||||||.|||||
Sbjct  788  ACGATTTCCAGCTTCAGAAACATCAGATAATTCATACTGGGGAGAAGCCGTTCAAATGTGAAATATGTGGTAAG  861

Query  886  AGCTTCCGTAGTAGAGCAAATCTTAATAGGCATTCCATGGTTCACATGCGAGAGAAACCATTCAGATGTGATAC  959
            ||||||.|...|||..|||.||||||||||||||                                        
Sbjct  862  AGCTTCTGCCTTAGGTCAAGTCTTAATAGGCATT----------------------------------------  895

Query  960  ATGTGGTAAGAGCTTTGGTCTGAAATCAGCACTTAATAGTCATCGCATGGTCCACACAGGAGAGAAACGGTACA  1033
                                                        |||||||||||||||.||||||||.|||||
Sbjct  896  --------------------------------------------GCATGGTCCACACAGCAGAGAAACTGTACA  925

Query 1034  AATGTGAGGAATGTGGAAAACGCTTCATTTATAGGCAAGATCTTTATAAGCATCAGATAGACCACACAGGGGAG  1107
            |||.||||||.|||||||||.||||||.|.||||.|.||||.|..||||||||||||||...||||||||..||
Sbjct  926  AATCTGAGGAGTGTGGAAAAGGCTTCACTGATAGCCTAGATTTGCATAAGCATCAGATAATTCACACAGGACAG  999

Query 1108  AAGCCATATAATTGTAAAGAATGTGGAAAGAGCTTCAGATGGGCCTCAGGTCTTTCAAGACATGTGCGAGTCCA  1181
            ||.||.||.|||||||||||||||||.|||||||||||||||.|||||                          
Sbjct 1000  AAACCGTACAATTGTAAAGAATGTGGGAAGAGCTTCAGATGGTCCTCA--------------------------  1047

Query 1182  CAGTGGAGAGACAACATTCAAATGTGAAGAATGTGGGAAGGGATTTTATACAAATTCACAACGTTATTCTCACC  1255
                                                                                      
Sbjct 1048  --------------------------------------------------------------------------  1047

Query 1256  AGAGAGCGCACAGTGGAGAAAAGCCATATAGATGTGAGGAGTGTGGGAAGGGCTACAAAAGGAGGTTGGATCTT  1329
                                                                                      
Sbjct 1048  --------------------------------------------------------------------------  1047

Query 1330  GACTTTCATCAGAGGGTCCACAGAGGAGAGAAACCCTATAATTGTAAGGAATGTGGGAAGAGCTTTGGCTGGGC  1403
                                                                                      
Sbjct 1048  --------------------------------------------------------------------------  1047

Query 1404  CTCGTGTCTTTTGAATCATCAGAGAATCCACAGTGGAGAAAAACCATTTAAATGTGAAGAATGTGGGAAAAGAT  1477
                |.||||||||..||||||.||||||||||||||||||||                               
Sbjct 1048  ----TATCTTTTGATCCATCAGCGAATCCACAGTGGAGAAAAA-------------------------------  1086

Query 1478  TTACTCAGAATTCACAACTTTATACCCATCGTAGAGTCCACAGTGGAGAAAAACCATTCAAATGTGAAGAGTGT  1551
                                                                                      
Sbjct 1087  --------------------------------------------------------------------------  1086

Query 1552  GGGAAAAGATTTACTCAGAATTCACAACTTTATTCTCATCGCAGAGTCCACACTGGAGTAAAGCCATACAAATG  1625
                                                                           |||||||.|||
Sbjct 1087  ---------------------------------------------------------------CCATACAGATG  1097

Query 1626  TGAAGAGTGTGGGAAGGGCTTCAACAGTAAGTTTAATCTTGACATGCACCAGAGGGTCCACACCGGAGAGAGAC  1699
            |||.||||||||||||||||.||..|||||||....||||.||.||||||||||||||||.||.||||||||||
Sbjct 1098  TGAGGAGTGTGGGAAGGGCTACATTAGTAAGTCAGGTCTTAACTTGCACCAGAGGGTCCATACTGGAGAGAGAC  1171

Query 1700  CTTATAATTGTAAAGAATGTGGGAAGAGCTTTAGCCGGGCCTCAAGTATTTTGAATCATAAGAGACTCCATGGT  1773
            |||||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||||.|||||     
Sbjct 1172  CTTATAATTGTAAGGAATGTGGGAAGAGCTTTAGCCGGGCTTCAAGTATTTTGAATCATAAGAAACTCC-----  1240

Query 1774  GATGAAAAGCCATTCAAATGTGAAGAGTGTGGGAAGAGATTTACTGAGAATTCACAGCTTCATTCCCATCAGAG  1847
                                                      ||||                  ||        
Sbjct 1241  ------------------------------------------ACTG------------------CC--------  1246

Query 1848  GGTTCACACTGGGGAAAAGCCATACAAATGTGAGAAGTGTGGAAAGAGCTTCAGATGGGCCTCAACTCATCTAA  1921
                        ||||||                                                      ||
Sbjct 1247  ------------GGAAAA------------------------------------------------------AA  1254

Query 1922  CCCATCAGAGACTCCACAGTAGAGAAAAACTACTTCAATGTGAGGACTGTGGGAAGAGCATTGTGCACAGTTCA  1995
            |||.|||                             ||||||||||.|||||.|||||..||||.|||.|.||.
Sbjct 1255  CCCTTCA-----------------------------AATGTGAGGATTGTGGAAAGAGGCTTGTACACCGGTCT  1299

Query 1996  TGCCTTAAAGACCAACAAAGAGACCAAAGTGGAGAGAAAACATCTAAATGTGAGGACTGTGGGAAGCGCTACAA  2069
            |.|..|||||||||||||.|||||||.|.||||||.||..||||.|||||||||||||||||||||||||||||
Sbjct 1300  TTCTGTAAAGACCAACAAGGAGACCACAATGGAGAAAACTCATCCAAATGTGAGGACTGTGGGAAGCGCTACAA  1373

Query 2070  GAGGCGCTTGAATCTTGATACGCTTTTGTCATTATTTTTAAATGACACA  2118
            |||||||||||||||.||||...||||.|||||||||||||||||.|..
Sbjct 1374  GAGGCGCTTGAATCTGGATATAATTTTATCATTATTTTTAAATGATATG  1422

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