Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02026
- Subject:
- NR_045259.1
- Aligned Length:
- 5874
- Identities:
- 1643
- Gaps:
- 4229
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCAGTTGGTGAAACTCCTCTGTCTCCCGCTCATCTTTTCATTGCTCGTTCCCCTCCTTCCCGCAGACACCCGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTCCCCTGGGCGCCAGCTCCGCGGCTCCAACGGGTCCAGAAACAAGCCGGATTTTTTTTTTTTCTTCCTGGAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATTGGCTTTGGTGTGTGTTGCCCTACCTCCCTCCTCCCCCTCCCACCCACAGCCCCCCCCCGGCCTTTTTTTTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTTTTTTTTTTTTTGAGACATGGCCCGGGCAGTGGCTCCTGGAAGAGGAACAAGTGTGGGAAAAGGGAGAGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCCGGAGCTAAATGACAGGATGCAGGCGACTTGAGACACAAAAAGAGAAGCGTTCCTCTCGGATCCAGGCATT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCTCGCTGCTTTCTTTTCTCCAAGACGGGCTGAGGATTGTACAGCTCTAGGCGGAGTTGGGGCTCTTCGGATC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCTTAGATTCTCCTCTTTGCTGCATTTCCCCCCACGTCCTCGTTCTCCCGCGTCTGCCTGCGGACCCGGAGAAG 518
Query 1 -----ATGGAGAGGGGGCTGCCGCTCCTCTGCGCCGTGCTCGCCCTCGTCCTCGCCCCGGCCGGCGCTTTTCGC 69
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGAGAATGGAGAGGGGGCTGCCGCTCCTCTGCGCCGTGCTCGCCCTCGTCCTCGCCCCGGCCGGCGCTTTTCGC 592
Query 70 AACGATAAATGTGGCGATACTATAAAAATTGAAAGCCCCGGGTACCTTACATCTCCTGGTTATCCTCATTCTTA 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACGATAAATGTGGCGATACTATAAAAATTGAAAGCCCCGGGTACCTTACATCTCCTGGTTATCCTCATTCTTA 666
Query 144 TCACCCAAGTGAAAAATGCGAATGGCTGATTCAGGCTCCGGACCCATACCAGAGAATTATGATCAACTTCAACC 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCACCCAAGTGAAAAATGCGAATGGCTGATTCAGGCTCCGGACCCATACCAGAGAATTATGATCAACTTCAACC 740
Query 218 CTCACTTCGATTTGGAGGACAGAGACTGCAAGTATGACTACGTGGAAGTCTTCGATGGAGAAAATGAAAATGGA 291
|||||||||||||||||||||||||||||||
Sbjct 741 CTCACTTCGATTTGGAGGACAGAGACTGCAA------------------------------------------- 771
Query 292 CATTTTAGGGGAAAGTTCTGTGGAAAGATAGCCCCTCCTCCTGTTGTGTCTTCAGGGCCATTTCTTTTTATCAA 365
Sbjct 772 -------------------------------------------------------------------------- 771
Query 366 ATTTGTCTCTGACTACGAAACACATGGTGCAGGATTTTCCATACGTTATGAAATTTTCAAGAGAGGTCCTGAAT 439
|||||||||
Sbjct 772 -----------------------------------------------------------------GTCCTGAAT 780
Query 440 GTTCCCAGAACTACACAACACCTAGTGGAGTGATAAAGTCCCCCGGATTCCCTGAAAAATATCCCAACAGCCTT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTCCCAGAACTACACAACACCTAGTGGAGTGATAAAGTCCCCCGGATTCCCTGAAAAATATCCCAACAGCCTT 854
Query 514 GAATGCACTTATATTGTCTTTGCGCCAAAGATGTCAGAGATTATCCTGGAATTTGAAAGCTTTGACCTGGAGCC 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GAATGCACTTATATTGTCTTTGCGCCAAAGATGTCAGAGATTATCCTGGAATTTGAAAGCTTTGACCTGGAGCC 928
Query 588 TGACTCAAATCCTCCAGGGGGGATGTTCTGTCGCTACGACCGGCTAGAAATCTGGGATGGATTCCCTGATGTTG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 TGACTCAAATCCTCCAGGGGGGATGTTCTGTCGCTACGACCGGCTAGAAATCTGGGATGGATTCCCTGATGTTG 1002
Query 662 GCCCTCACATTGGGCGTTACTGTGGACAGAAAACACCAGGTCGAATCCGATCCTCATCGGGCATTCTCTCCATG 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GCCCTCACATTGGGCGTTACTGTGGACAGAAAACACCAGGTCGAATCCGATCCTCATCGGGCATTCTCTCCATG 1076
Query 736 GTTTTTTACACCGACAGCGCGATAGCAAAAGAAGGTTTCTCAGCAAACTACAGTGTCTTGCAGAGCAGTGTCTC 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTTTTTTACACCGACAGCGCGATAGCAAAAGAAGGTTTCTCAGCAAACTACAGTGTCTTGCAGAGCAGTGTCTC 1150
Query 810 AGAAGATTTCAAATGTATGGAAGCTCTGGGCATGGAATCAGGAGAAATTCATTCTGACCAGATCACAGCTTCTT 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 AGAAGATTTCAAATGTATGGAAGCTCTGGGCATGGAATCAGGAGAAATTCATTCTGACCAGATCACAGCTTCTT 1224
Query 884 CCCAGTATAGCACCAACTGGTCTGCAGAGCGCTCCCGCCTGAACTACCCTGAGAATGGGTGGACTCCCGGAGAG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 CCCAGTATAGCACCAACTGGTCTGCAGAGCGCTCCCGCCTGAACTACCCTGAGAATGGGTGGACTCCCGGAGAG 1298
Query 958 GATTCCTACCGAGAGTGGATACAGGTAGACTTGGGCCTTCTGCGCTTTGTCACGGCTGTCGGGACACAGGGCGC 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GATTCCTACCGAGAGTGGATACAGGTAGACTTGGGCCTTCTGCGCTTTGTCACGGCTGTCGGGACACAGGGCGC 1372
Query 1032 CATTTCAAAAGAAACCAAGAAGAAATATTATGTCAAGACTTACAAGATCGACGTTAGCTCCAACGGGGAAGACT 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CATTTCAAAAGAAACCAAGAAGAAATATTATGTCAAGACTTACAAGATCGACGTTAGCTCCAACGGGGAAGACT 1446
Query 1106 GGATCACCATAAAAGAAGGAAACAAACCTGTTCTCTTTCAGGGAAACACCAACCCCACAGATGTTGTGGTTGCA 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 GGATCACCATAAAAGAAGGAAACAAACCTGTTCTCTTTCAGGGAAACACCAACCCCACAGATGTTGTGGTTGCA 1520
Query 1180 GTATTCCCCAAACCACTGATAACTCGATTTGTCCGAATCAAGCCTGCAACTTGGGAAACTGGCATATCTATGAG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 GTATTCCCCAAACCACTGATAACTCGATTTGTCCGAATCAAGCCTGCAACTTGGGAAACTGGCATATCTATGAG 1594
Query 1254 ATTTGAAGTATACGGTTGCAAGATAACAGATTATCCTTGCTCTGGAATGTTGGGTATGGTGTCTGGACTTATTT 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 ATTTGAAGTATACGGTTGCAAGATAACAGATTATCCTTGCTCTGGAATGTTGGGTATGGTGTCTGGACTTATTT 1668
Query 1328 CTGACTCCCAGATCACATCATCCAACCAAGGGGACAGAAACTGGATGCCTGAAAACATCCGCCTGGTAACCAGT 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 CTGACTCCCAGATCACATCATCCAACCAAGGGGACAGAAACTGGATGCCTGAAAACATCCGCCTGGTAACCAGT 1742
Query 1402 CGCTCTGGCTGGGCACTTCCACCCGCACCTCATTCCTACATCAATGAGTGGCTCCAAATAGACCTGGGGGAGGA 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 CGCTCTGGCTGGGCACTTCCACCCGCACCTCATTCCTACATCAATGAGTGGCTCCAAATAGACCTGGGGGAGGA 1816
Query 1476 GAAGATCGTGAGGGGCATCATCATTCAGGGTGGGAAGCACCGAGAGAACAAGGTGTTCATGAGGAAGTTCAAGA 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 GAAGATCGTGAGGGGCATCATCATTCAGGGTGGGAAGCACCGAGAGAACAAGGTGTTCATGAGGAAGTTCAAGA 1890
Query 1550 TCGGGTACAGCAACAACGGCTCGGACTGGAAGATGATCATGGATGACAGCAAACGCAAGGCGAAGTCTTTTGAG 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 TCGGGTACAGCAACAACGGCTCGGACTGGAAGATGATCATGGATGACAGCAAACGCAAGGCGAAGTCTTTTGAG 1964
Query 1624 GGCAACAACAACTATGATACACCTGAGCTGCGGACTTTTCCAGCTCTCTCCACGCGATTCATCAGGATCTACCC 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 GGCAACAACAACTATGATACACCTGAGCTGCGGACTTTTCCAGCTCTCTCCACGCGATTCATCAGGATCTACCC 2038
Query 1698 CGAGAGAGCCACTCATGGCGGACTGGGGCTCAGAATGGAGCTGCTGGGCTGTGAAGTGGA-------------- 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 CGAGAGAGCCACTCATGGCGGACTGGGGCTCAGAATGGAGCTGCTGGGCTGTGAAGTGGAAGCCCCTACAGCTG 2112
Query 1758 ----------------------------------------------------------------------AGGT 1761
||||
Sbjct 2113 GACCGACCACTCCCAACGGGAACTTGGTGGATGAATGTGATGACGACCAGGCCAACTGCCACAGTGGAACAGGT 2186
Query 1762 GGCACCACTGTGCTGGCCACAGAAAAGCCCACGGTCATAGACAGCACCATACAATCAG-GTATCAAA------- 1827
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||.||.||
Sbjct 2187 GGCACCACTGTGCTGGCCACAGAAAAGCCCACGGTCATAGACAGCACCATACAATCAGAGTTTCCAACATATGG 2260
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 2261 TTTTAACTGTGAATTTGGCTGGGGCTCTCACAAGACCTTCTGCCACTGGGAACATGACAATCACGTGCAGCTCA 2334
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 2335 AGTGGAGTGTGTTGACCAGCAAGACGGGACCCATTCAGGATCACACAGGAGATGGCAACTTCATCTATTCCCAA 2408
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 2409 GCTGACGAAAATCAGAAGGGCAAAGTGGCTCGCCTGGTGAGCCCTGTGGTTTATTCCCAGAACTCTGCCCACTG 2482
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 2483 CATGACCTTCTGGTATCACATGTCTGGGTCCCACGTCGGCACACTCAGGGTCAAACTGCGCTACCAGAAGCCAG 2556
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 2557 AGGAGTACGATCAGCTGGTCTGGATGGCCATTGGACACCAAGGTGACCACTGGAAGGAAGGGCGTGTCTTGCTC 2630
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 2631 CACAAGTCTCTGAAACTTTATCAGGTGATTTTCGAGGGCGAAATCGGAAAAGGAAACCTTGGTGGGATTGCTGT 2704
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 2705 GGATGACATTAGTATTAATAACCACATTTCACAAGAAGATTGTGCAAAACCAGCAGACCTGGATAAAAAGAACC 2778
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 2779 CAGAAATTAAAATTGATGAAACAGGGAGCACGCCAGGATACGAAGGTGAAGGAGAAGGTGACAAGAACATCTCC 2852
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 2853 AGGAAGCCAGGCAATGTGTTGAAGACCTTAGACCCCATCCTCATCACCATCATAGCCATGAGTGCCCTGGGGGT 2926
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 2927 CCTCCTGGGGGCTGTCTGTGGGGTCGTGCTGTACTGTGCCTGTTGGCATAATGGGATGTCAGAAAGAAACTTGT 3000
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3001 CTGCCCTGGAGAACTATAACTTTGAACTTGTGGATGGTGTGAAGTTGAAAAAAGACAAACTGAATACACAGAGT 3074
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3075 ACTTATTCGGAGGCATGAAGGCAGACAGAGATGAAAAGACAGTCAAAGGACGGAAGTGGAAGGACGGGAGTGAG 3148
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3149 CTGGGGAGCTGTTGATCTTTCACTATACAGGCTGGGAAGTGTGTTGATGACCACTGAGCCAGGCTTTTCTCAGG 3222
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3223 AGCTTCAATGAGTATGGCCGACAGACATGGACAAGGAGCTGTGTTCACCATCGGACTCATGTGCAGTCAGCTTT 3296
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3297 TTTCCTGTTGGTTTCATTTGAATAATCAGATGCTGGTGTTGAGACCAAGTATGATTGACATAATCATTCATTTC 3370
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3371 GACCCCTCCTGCCCCTCTCTCTCTCTCTCCTCTCCCCTTTGTGGATTCTTTTTGGAAACTGAGCGAAATCCAAG 3444
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3445 ATGCTGGCACCAAGCGTATTCCGTGTGGCCCTTTGGATGGACATGCTACCTGAAACCCAGTGCCCAGAATATAC 3518
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3519 TAGAATCACCGCATTTCAGTGGACTCCTGAAGTTGTACTTGTGTATAATTGCCCGCGTCGTGCATAGGCAAAGA 3592
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3593 AGGATTAGGCTGTTTTCTTTTTAAAGTACTGTAGCCTCAGTACTGGTGTAGTGTGTCAGCTCTGTTTACGAAGC 3666
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3667 AATACTGTCCAGTTTTCTTGCTGTTTTTCCGGTGTTGTACTAAACCTCGTGCTTGTGAACTCCATACAGAAAAC 3740
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3741 GGTGCCATCCCTGAACACGGCTGGCCACTGGGTATACTGCTGACAACCGCAACAACAAAAACACAAATCCTTGG 3814
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3815 CACTGGCTAGTCTATGTCCTCTCAAGTGCCTTTTTGTTTGTACTGGTTCATTGTGTTACATTAACGACCCACTC 3888
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3889 TGCTTCTTGCTGGTGAAAGCCCTGCTCTTTAATCAAACTCTGGTGGCCCACTGACTAAGAAGAAAGTTTATTTT 3962
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 3963 CGTGTGAGATGCCAGCCCCTCCGGGCAGGCAAGGGCTCTGAAGATTTGGCAACGTGGCTTAATTGTTCTGCTTT 4036
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4037 TTCTGTAGTTCAATTTCATGTTTCTTGACCCTTTTGTATAAAGCTACAATATTCTCTCTTATTGTTCTTTCATA 4110
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4111 TGGAATGTATTTTCAAATGTAAACTCTCTTCTCTTTCTCTCTCCTATCTCTCTGTCTTTTTTCTCTCTTAGAAT 4184
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4185 TGGAGGATTTGCCATTGTCCAGGAAAGAAACTTGCAGCTTTAACCTGCTGGGAATGGCAAACGATTTTACTAGA 4258
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4259 CTTTATGTTTAAAAATAAATAAATAAGGGAAATTCCTAACTTTGCCCTCCAAAGTCTAACTTTGGTTTTCTTGT 4332
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4333 TAACTGGTTAAAGTGACAGTATCTTTTTTCCTTATCTATTCTATTCAAAATGACCTTTGATAGAAATGTTGGCA 4406
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4407 TTTAGTAGAAATAGTGATAAGTTGAGGAAAGAAATAATACAAATTGGCTTTCAAGTGAGACCCAAAGGAAGAAC 4480
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4481 TGGATAAAATCTTCCAAATCCAAAAGCATGAGATTTTTCTATCCAAATATGCAAAAATGACCCAAGAGAACTTT 4554
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4555 CTTATTTTGCTACTGAGTCACACAAGGGAAGTGGAAGGAAGAACAGTTAATTTAAGAATGAAACTATAAATCCT 4628
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4629 GATGCCTGGGGGTCAAGTATTTTAAGATAAGAGGGGGAAAAACACATAAAGTCAAACAAATGTTTTAAAAATTC 4702
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4703 ATAACAGCAACCTTGAAAAAATAGACTTAAATGAATGCTTCTAGAAACTTCCAGCGGCTCACAAAGAATAAGCC 4776
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4777 TGCCTTAGGGCTGGCAACATCTAAGCCTCTAACAGCACAGGGAAGCAAATATCTTACCAGGCAGCCTATGAATT 4850
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4851 AACCCAAAGAAGCTTTGGTTGGTTTTGGTGGATTTTTATCATGCCATGTTGGACATGAGATTTTTTAGATCTTC 4924
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4925 CTTCCCACATTGCTAGACGTCTCACTCAAAGACATTTGTTGGGAGTCACATTTGCATCATAGACGAGACAGTCC 4998
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 4999 ATTCATCTTAGTTAAATTGGATTGAGAATGCCTTTTGTTTCCAGGAAAATATTGATCACCATGAAAGAAGAATA 5072
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 5073 GTTTTTTGTCCCCAGAGACATTCATTTAGTTGATATAATCCTACCAGAAGGAAAGCACTAAGAAACACTCGTTT 5146
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 5147 GTTGTTTTTAAAGGCAACAGACTTAAAGTTGTCCTCAGCCAAGGAAAAATGATACTGCAACTTTAAAATTTAAA 5220
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 5221 GTATCTTGCACTGATAAATATATTTAAAAATTATATGTTTATAAAGTTATTAATTTGTAAAGGCAGTGTTACAA 5294
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 5295 AATGTTCAGTTTATATTGTTTTAGATTGTTTTGTAATTTTTAAAGGTGTAAAATAACATATTTTTTCTTTATGG 5368
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 5369 AAATCTATAAAACTTTCTGTAGTAAAATGTTTTCATTTTACTGGTATATTATTGCTTCATGTTTTGTACCATCA 5442
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 5443 TAAGATTTTGTGCAGATTTTTTTTACAGAAATTATTATTTTCTATGACAATATGACACTTGTAAATTGTTGTTT 5516
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 5517 CAAAATGAACAGCGAAGCCTTAACTTTAAATGACATTTGTATTCTCAGACACTGAGTAGCATAAAAACCACATA 5590
Query 1828 -------------------------------------------------------------------------- 1827
Sbjct 5591 GAACTGAACTGTAACTTAAATTCCAAACTATGACTACTACATTCCAAAGAAACAGTTGAATTAAACATTTTCAT 5664
Query 1828 ---------------------------- 1827
Sbjct 5665 AAAATATCCCACAAAAAAAAAAAAAAAA 5692
