Construct: ORF ccsbBroadEn_02026

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010965.1_s300c1, BRDN0000388502
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NRP1 (8829)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8829 NRP1 neuropilin 1 NM_001024629.2 100% 100%
2 human 8829 NRP1 neuropilin 1 XM_011519756.2 96.7% 96.3% (many diffs)
3 human 8829 NRP1 neuropilin 1 NM_001024628.2 94.5% 94.5% 1758_1862del
4 human 8829 NRP1 neuropilin 1 XM_011519755.3 92.6% 92.2% (many diffs)
5 human 8829 NRP1 neuropilin 1 XM_006717526.2 91.6% 91.2% (many diffs)
6 human 8829 NRP1 neuropilin 1 XM_006717525.2 68.4% 68.1% (many diffs)
7 human 8829 NRP1 neuropilin 1 XM_006717524.2 68.3% 68% (many diffs)
8 human 8829 NRP1 neuropilin 1 XM_017016865.2 67.6% 67.2% (many diffs)
9 human 8829 NRP1 neuropilin 1 NM_001330068.1 67.1% 66.8% (many diffs)
10 human 8829 NRP1 neuropilin 1 XM_006717522.2 67% 66.7% (many diffs)
11 human 8829 NRP1 neuropilin 1 NM_001244973.1 66.4% 66.1% (many diffs)
12 human 8829 NRP1 neuropilin 1 NM_001244972.1 66.3% 66% (many diffs)
13 human 8829 NRP1 neuropilin 1 NM_003873.6 65.9% 65.6% (many diffs)
14 human 8829 NRP1 neuropilin 1 XM_006717521.2 65.8% 65.4% (many diffs)
15 human 8829 NRP1 neuropilin 1 XM_017016866.2 46.2% 46% (many diffs)
16 human 8829 NRP1 neuropilin 1 NR_045259.1 27.9% (many diffs)
17 mouse 18186 Nrp1 neuropilin 1 XM_006530768.3 83.3% 88.1% (many diffs)
18 mouse 18186 Nrp1 neuropilin 1 XM_006530767.2 57.3% 60.5% (many diffs)
19 mouse 18186 Nrp1 neuropilin 1 NM_008737.2 56.8% 60.1% (many diffs)
20 mouse 18186 Nrp1 neuropilin 1 XM_006530766.3 56.8% 60.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1893
ORF length:
1827
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GAGGGGGCTG CCGCTCCTCT GCGCCGTGCT CGCCCTCGTC CTCGCCCCGG
121CCGGCGCTTT TCGCAACGAT AAATGTGGCG ATACTATAAA AATTGAAAGC CCCGGGTACC
181TTACATCTCC TGGTTATCCT CATTCTTATC ACCCAAGTGA AAAATGCGAA TGGCTGATTC
241AGGCTCCGGA CCCATACCAG AGAATTATGA TCAACTTCAA CCCTCACTTC GATTTGGAGG
301ACAGAGACTG CAAGTATGAC TACGTGGAAG TCTTCGATGG AGAAAATGAA AATGGACATT
361TTAGGGGAAA GTTCTGTGGA AAGATAGCCC CTCCTCCTGT TGTGTCTTCA GGGCCATTTC
421TTTTTATCAA ATTTGTCTCT GACTACGAAA CACATGGTGC AGGATTTTCC ATACGTTATG
481AAATTTTCAA GAGAGGTCCT GAATGTTCCC AGAACTACAC AACACCTAGT GGAGTGATAA
541AGTCCCCCGG ATTCCCTGAA AAATATCCCA ACAGCCTTGA ATGCACTTAT ATTGTCTTTG
601CGCCAAAGAT GTCAGAGATT ATCCTGGAAT TTGAAAGCTT TGACCTGGAG CCTGACTCAA
661ATCCTCCAGG GGGGATGTTC TGTCGCTACG ACCGGCTAGA AATCTGGGAT GGATTCCCTG
721ATGTTGGCCC TCACATTGGG CGTTACTGTG GACAGAAAAC ACCAGGTCGA ATCCGATCCT
781CATCGGGCAT TCTCTCCATG GTTTTTTACA CCGACAGCGC GATAGCAAAA GAAGGTTTCT
841CAGCAAACTA CAGTGTCTTG CAGAGCAGTG TCTCAGAAGA TTTCAAATGT ATGGAAGCTC
901TGGGCATGGA ATCAGGAGAA ATTCATTCTG ACCAGATCAC AGCTTCTTCC CAGTATAGCA
961CCAACTGGTC TGCAGAGCGC TCCCGCCTGA ACTACCCTGA GAATGGGTGG ACTCCCGGAG
1021AGGATTCCTA CCGAGAGTGG ATACAGGTAG ACTTGGGCCT TCTGCGCTTT GTCACGGCTG
1081TCGGGACACA GGGCGCCATT TCAAAAGAAA CCAAGAAGAA ATATTATGTC AAGACTTACA
1141AGATCGACGT TAGCTCCAAC GGGGAAGACT GGATCACCAT AAAAGAAGGA AACAAACCTG
1201TTCTCTTTCA GGGAAACACC AACCCCACAG ATGTTGTGGT TGCAGTATTC CCCAAACCAC
1261TGATAACTCG ATTTGTCCGA ATCAAGCCTG CAACTTGGGA AACTGGCATA TCTATGAGAT
1321TTGAAGTATA CGGTTGCAAG ATAACAGATT ATCCTTGCTC TGGAATGTTG GGTATGGTGT
1381CTGGACTTAT TTCTGACTCC CAGATCACAT CATCCAACCA AGGGGACAGA AACTGGATGC
1441CTGAAAACAT CCGCCTGGTA ACCAGTCGCT CTGGCTGGGC ACTTCCACCC GCACCTCATT
1501CCTACATCAA TGAGTGGCTC CAAATAGACC TGGGGGAGGA GAAGATCGTG AGGGGCATCA
1561TCATTCAGGG TGGGAAGCAC CGAGAGAACA AGGTGTTCAT GAGGAAGTTC AAGATCGGGT
1621ACAGCAACAA CGGCTCGGAC TGGAAGATGA TCATGGATGA CAGCAAACGC AAGGCGAAGT
1681CTTTTGAGGG CAACAACAAC TATGATACAC CTGAGCTGCG GACTTTTCCA GCTCTCTCCA
1741CGCGATTCAT CAGGATCTAC CCCGAGAGAG CCACTCATGG CGGACTGGGG CTCAGAATGG
1801AGCTGCTGGG CTGTGAAGTG GAAGGTGGCA CCACTGTGCT GGCCACAGAA AAGCCCACGG
1861TCATAGACAG CACCATACAA TCAGGTATCA AATACCCAAC TTTCTTGTAC AAAGTtggca
1921ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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