Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_02030
• Subject: NM_001308043.2
• Aligned Length: 1470
• Identities: 686
• Gaps: 750

Alignment

Query    1  ATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATGAGAAGGAGATGCTGCTCTTTTTGTG  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATGAGAAGGAGATGCTGCTCTTTTTGTG  74

Query   75  CCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAAAGAGGTAAGC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAAAGAGGTAAGC  148

Query  149  TGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCGATTTGACCTGCTCAAACGTATCTTGAAGATG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCGATTTGACCTGCTCAAACGTATCTTGAAGATG  222

Query  223  GACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGAGTGCTGATGGCAGA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGAGTGCTGATGGCAGA  296

Query  297  GATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGGGCCGAGGCA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGGGCCGAGGCA  370

Query  371  AGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCCCCAGATCAA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCCCCAGATCAA  444

Query  445  CTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAAGTACAAGCA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAAGTACAAGCA  518

Query  519  GTCTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAAGCAGCAATCCAAAAGAGTCTCAAGGATCCTT  592
            |||||.|   |||               .|||||                                |||.||| 
Sbjct  519  GTCTGGT---GGA---------------TGGAAT--------------------------------GGAACCT-  541

Query  593  CAAATAACTTCAGGCTCCATAATGGGAGAAGTAAAGAACAAAGACTTAAGGAAC----AGCTTGGCGCTCAACA  662
                        ||                   |.||.|||||.||       |    ||||||..|||     
Sbjct  542  ------------GG-------------------ATGACCAAAGCCT-------CCTTTAGCTTGTGGCT-----  572

Query  663  AGAACCAGTGAAGAAATC-CATTCAGGAATCAGAAGCTTT-TTTGCCTCAGAGCATACCTGAAGAGAGATACAA  734
                       ||||||| |.|.|            |||| |.|.|.|||   .||.||     |||..|.|  
Sbjct  573  -----------AGAAATCGCGTCC------------CTTTATATTCTTCA---TATCCC-----AGATCTGC--  613

Query  735  GATGAAGAGCAAGCCCCTAGGAATCTG-CCTG-ATAATC--GAT---TGCATTGGCAATG-AGACAGAGC--TT  798
                     |||..||.|       || |||| |||.||  |||   ||||    .|||| .|.|| |||  ||
Sbjct  614  ---------CAACTCCAT-------TGCCCTGTATATTCATGATCTCTGCA----AAATGCTGCCA-AGCAGTT  666

Query  799  CTTCGAGACACCTTCA--CTTCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCT---CAGTATGCATGGTATA  867
            |||   .||| .||||  ||||        |.|||    ||||  |||.|.||||   |||   || |||    
Sbjct  667  CTT---AACA-TTTCAGTCTTC--------AAGAA----AGAA--TCTGGGATCTGCACAG---GC-TGG----  714

Query  868  TCCCAGATTCT-TGGCCA--------ATTTGCCTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGT  932
               |||| .|| |||.||        .|||||.|||||||                                  
Sbjct  715  ---CAGA-GCTATGGACATTCAGGGGTTTTGCATGTATGC----------------------------------  750

Query  933  CCTGGTGAGCCGAGGAGGCTCCCAGAGTGTGTATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACA  1006
                                                                                      
Sbjct  751  --------------------------------------------------------------------------  750

Query 1007  TCAGGAGGATGTTCATGGGAGATTCATGCCCTTATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTAT  1080
                                                                                      
Sbjct  751  --------------------------------------------------------------------------  750

Query 1081  GTGGTGTCAGAGGGCCAGCTGGAGGACAGCAGCCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATT  1154
                                                                                      
Sbjct  751  --------------------------------------------------------------------------  750

Query 1155  CAAGGCTCAGAAGCGAGGGCTGTGCACAGTTCACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACA  1228
                                                                                      
Sbjct  751  --------------------------------------------------------------------------  750

Query 1229  TGTCCCTGCTGGAGCAGTCTCACAGCTCACCATCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAA  1302
                                                                                      
Sbjct  751  --------------------------------------------------------------------------  750

Query 1303  AGAAAACGCCCACTCCTGGATCTTCACATTGAACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGC  1376
                                                                                      
Sbjct  751  --------------------------------------------------------------------------  750

Query 1377  CAAGGAGAAATATTATGTCTGGCTGCAGCACACTCTGAGAAAGAAACTTATCCTCTCCTACACA  1440
                                                                            
Sbjct  751  ----------------------------------------------------------------  750