Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02030
Subject:
XR_001739013.2
Aligned Length:
3300
Identities:
1440
Gaps:
1860

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACAAGCCATAGCAGGAAACAGCGAGCTTGCAGCCTCACCGACGAGTCTCAACTAAAAGGGACTCCCGGAGCTAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGGTGGGGACTCGGCCTCACACAGTGAGTGCCGGCTATTGGACTTTTGTCCAGTGACAGCTGAGACAACAAGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCACGGGAGGAGGTGTAGGAGAGAAGCGCCGCGAACAGCGATCGCCCAGCACCAAGTCCGCTTCCAGGCTTTCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTTTCTTTGCCTCCATCTTGGGTGCGCCTTCCCGGCGTCTAGGGGAGCGAAGGCTGAGGTGGCAGCGGCAGGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGTCCGGCCGCGACAGGACGAACTCCCCCACTGGAAAGGATTCTGAAAGAAATGAAGTCAGCCCTCAGAAATGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGTTGACTGCCTGCTGGCTTTCTGTTGACTGGCCCGGAGCTGTACTGCAAGACCCTTGTGAGCTTCCCTAGTCT  444

Query    1  ---------ATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATGAGAAGGAGATGCTGCT  65
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAGAGTAGGATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATGAGAAGGAGATGCTGCT  518

Query   66  CTTTTTGTGCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAAA  139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTTTTTGTGCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAAA  592

Query  140  GAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCGATTTGACCTGCTCAAACGTATC  213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCGATTTGACCTGCTCAAACGTATC  666

Query  214  TTGAAGATGGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGAGTGCT  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTGAAGATGGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGAGTGCT  740

Query  288  GATGGCAGAGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGG  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GATGGCAGAGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGG  814

Query  362  GCCGAGGCAAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCC  435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GCCGAGGCAAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCC  888

Query  436  CCAGATCAACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAA  509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CCAGATCAACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAA  962

Query  510  GTACAAGCAGTCTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAAGCAGCAATCCAAAAGAGTCTCA  583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GTACAAGCAGTCTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAAGCAGCAATCCAAAAGAGTCTCA  1036

Query  584  AGGATCCTTCAAATAACTTCAGGCTCCATAATGGGAGAAGTAAAGAACAAAGACTTAAGGAACAGCTTGGCGCT  657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AGGATCCTTCAAATAACTTCAGGCTCCATAATGGGAGAAGTAAAGAACAAAGACTTAAGGAACAGCTTGGCGCT  1110

Query  658  CAACAAGAACCAGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTCAGAGCATACCTGAAGAGAGATA  731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CAACAAGAACCAGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTCAGAGCATACCTGAAGAGAGATA  1184

Query  732  CAAGATGAAGAGCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGCAATGAGACAGAGCTTCTTCGAG  805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CAAGATGAAGAGCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGCAATGAGACAGAGCTTCTTCGAG  1258

Query  806  ACACCTTCACTTCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTT  879
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ACACCTTCACTTCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTT  1332

Query  880  GGCCAATTTGCCTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTC  953
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GGCCAATTTGCCTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTC  1406

Query  954  CCAGAGTGTGTATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAG  1027
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CCAGAGTGTGTATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAG  1480

Query 1028  ATTCATGCCCTTATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTG  1101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ATTCATGCCCTTATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTG  1554

Query 1102  GAGGACAGCAGCCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCT  1175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GAGGACAGCAGCCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCT  1628

Query 1176  GTGCACAGTTCACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTC  1249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GTGCACAGTTCACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTC  1702

Query 1250  ACAGCTCACCATCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAA---------------------  1302
            |||||||||||||||||||||||||||||||||||||||||||||||||||||                     
Sbjct 1703  ACAGCTCACCATCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGCTCCTTTACTGCCAAAGCA  1776

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1777  GGGGACAAGGACTGCTTCAGTTTCTCTGCCTTCTCTTTCTCTGAAGGGGGACAATTCCCGGAAGTGGAATTACA  1850

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1851  GAGTCAAAGGACATGCATTTTTCAAGCCTCGGATGCATCTTACTAGATGTCCTATAGGATGGTCATATCAGCTT  1924

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1925  TATAGGAGAGTAGCTGTGTCCCTGAATTCTCCCTGACACTGCATGCTCTTATATTTCCTCAAGTTTTGACAATT  1998

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1999  TGATAGGTGAAAAGTGGTATCTGACTGTTCAGATCTGGAAGGCTTTGTTATATAAACATTTTTTTAATGTTTAT  2072

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2073  TGGCAAGAATACTTTTCTAAGAGAAACATCAGTGAGCTGGTTTCCATTTAAGCTGAATGAAGCCACAATGTACC  2146

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2147  TCAAGTATAAGATTAACTGGCCTTTTTCAGTTGCACTCTAATTACAATTTAGAATGATGTTTCTGAGCCACCTG  2220

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2221  TCAAATGCATTCTGGGCTGTACCTCTGCGTACCCCAGGAATAAATCTCATGGCCTTCTTTACCTGGCCTCCTTA  2294

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2295  GTGGTGGCCCAGCAGGAAGCGGGGGTTAGAGCAGGAGCCACTCAGCCTTCCAAGATAGATACTCCATGGGCCGG  2368

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2369  TGGTATTACTGGCCTTTTGAGCCCATCCCCATTTGCATAGATGATCCACGTGGGTTATCATCTGGCTGGTATGT  2442

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2443  TCCCAGAGTGAAACTCAGCAGCCCCTTGAGGGAGGGGATGGTGGCCATCAGGCCAGAGTATTGCAAGTTAGTTT  2516

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2517  GGATCATTTGCTAAGCAGCTTGTGGTGCCTTCAGAAAGGAACAGTTTCAAAGAACTTTCACATCTGTTGGCTCA  2590

Query 1303  ---------------------------------------------------------------------AGAAA  1307
                                                                                 |||||
Sbjct 2591  TTTCGCCCTAATGACAGTCTTCTCTTTGATATTTGCATGGCATTAAATTTTGCCTTTCTTGTTTTCTCCAGAAA  2664

Query 1308  ACGCCCACTCCTGGATCTTCACATTGAACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGG  1381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  ACGCCCACTCCTGGATCTTCACATTGAACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGG  2738

Query 1382  AGAAATATTATGTCTGGCTGCAGCACACTCTGAGAAAGAAACTTATCCTCTCCTACACA---------------  1440
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
Sbjct 2739  AGAAATATTATGTCTGGCTGCAGCACACTCTGAGAAAGAAACTTATCCTCTCCTACACATAAGAAACCAAAAGG  2812

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2813  CTGGGCGTAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGAGGGCAGATCACTTCAGGTCAGGA  2886

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2887  GTTCGAGACCAGCCTGGCCAACATGAGTCTGAAAAGTGTCGAAGAGACAGTTTTCAGGAACAACAAGCAATTAT  2960

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2961  TCCTACTTTCCAAGTTATTTTGATGCCATGGTGGCTCATACCTATAATCTGAGTACTTTGGGAGGCTGAGGTGG  3034

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3035  ACTGATCACTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATAGCAAGACTCCATCTCTACAAAAAAAGAC  3108

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3109  AAAATTTAGCTGAGCGTGGTGGCGTGTTCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGTGAGTGGATCCCCTG  3182

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3183  AGCCCAGAGAGGTCAAGGTTGTGATGAGCTGTGATCACACCACTGCACTTCAGCATGGGAGACAGAGTGAGACC  3256

Query 1441  --------------------------------------------  1440
                                                        
Sbjct 3257  CTGTTTCAGAAAAAATAAATAAATAAAACCACCAGCACCACAAA  3300