Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02030
- Subject:
- XR_001739016.2
- Aligned Length:
- 4561
- Identities:
- 1440
- Gaps:
- 3121
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTGCAGCAGGCCCTGCGCCGCCGCGCCCCGCGTCCCACCCCGCGCCGCTCCTCACAGCCCTGCGCTCCGGGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACTGCAGGTGGCCGGCAGTGGCCAGGGGATGGCGGGGGCGCTTCTGGAACCTGACTCAGTTTTGTAGGTTCCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTCGGTTGTTTACCGCGGGCTTTGCGGAATGCCCCCGCTTCCGTTTCCGCCCGGCTCCGAACCCCCGAACCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTTCTACCCGCAACTCCGCCCCGGATTCCCAGAAAGGGGCGACCTGGGCCACAGCGGTACAAGCTGCACCCCGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGACCTGAGAGACCGGAAGTAACCCTTGGCCAACTCTGGCCGCCCCCTGCAGCCGCAGCCCCAGAGGCCCACC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGCGAGCTTCAGTGGCGGGCCCTCAGCGTCGTGTAAACTTTGCTTAAAATGATCTTGAGAGTTCAATTCTTGGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGAACTGTTGAGAAGATCTGGCATTTTTCCTTTCGAAAGTTGTTGGGAACGTGGACTTTCCCAACAATTGTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATGCGCTCGATCTCACTCAGTGGGAGCCGCCGCCCTGGAGGGAATTTCACAATAGCCTGGTCAGGGCGGTTATT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTCCAGAGCAGTTTAATGTCTATTTTGCCCAAGTGCAAGGAAAGCTTGCCTTGGGAAAGCTGGGAATGCTTGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TAATGAAAAGTTTTTAGAGCCTTTTAAAATGAACCTGTTTCTGCCACTTTTCCACCGCCTCAAAACGACTGGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AATGTAAACTGGCTTCAAGATGTTCTTGCTTGAGGGTGTCTGGATTTGGACAGAAGGCCATGTTCTTTTAATAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAACAGTGGCACGCAGTAGAACAAAGGCCACTGAAATTCAGAATCAGTTTTTGGCTCCACGGGCAGGAAGTAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTCAAGGACGCCAGAGGTCTTGCGAATATTTTAATTGGTTGACATTTGAAATTTGTTCTTAAGCAATGAGGGGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAAACCAGTAGGGGGATAGCGTATAGCATAAGTAAAGCTTTTTGGACATCAACAAACTGCGATAATCTACAACA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GACAGCGGGCTCTGGAAGGTTTGACCTGCTTTAGAGAGAGATTTCCGATAAGAGGAACGGAGTTTTTGGCACTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTCGGTTTGGTGATTCCCCTAAATAACCTTACAAAAGTTTCGTTGAACAAAAAACCTGGCTGGAGCTCCAAGAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTTTTTTTTTTTTTTTTTTTTTTGAGACAGCATTTCACTCTTGTTGCCCAGGCTGGAATGCAATGGCACTATCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTGCTCACCGCAACCTCCGCCTGTCGGGTTCAAGCGATTCTCGTGCCTCAGCCTCTCAAGTAGCTGAGATTACA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGCATGCACCACCATGCCCGGCTAGTTTTGTATTTTTAATAGAGACGGGGTTTCTCCATGTTGGTCAGTCTGGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTCGAACTCCTGACCTTAGGTGATCCGCCCGCCTCGGCATCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGCCCGGCCCAACTCCAAGATCTAAACAAAAAAGACTGGGTTGAAAGGGAGTTTTTAATGTTTACTGTTTGCTT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TACATCCATTTTCTTGTTTTGTTAATACTTGCTTTACTTAAGCTTTTGGGTCAAATGTCCTCGTTAAAATGGCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCTCTAGCGACTTTATGTTTTACGTTTCTGTTTGTAACTGACATTTGACCTTCTTTTAACACGGTATTACTTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTTCCTTATACCGGTTTCCAAGGTGAAGCCATTTGCAGGGTCGCTGGGTTTCCCCCTCCCCCCGAAAGTCTTGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GCGACCCGGGGTGGGCCGGATAGTGTGCAGTTTTTTGAGCCTTGGGCTGGGGACCTCCAGGAAGCTGAAGCGGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AATTGCCTAGGCCCCTGGGGCATTGGAGGTCCTACCGCAGCTCCTAGTAGGTGGTGGGGGCGCAGCGGCTGTCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCACTCAGTCCTGGTGGGGTCGCACGTAACGGTCCTGAGCTATGCATAAGCCGTTTGACCACGCATGGAGAATT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTACCACCCAGAGACACGCGAGTGGCCCTGTGCAAGTTTCAACTGCGCGGGGGGCGGGGAATTCCGCAGACAGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATTCTAGAATTTATGTCTTGTGTGGTAACATTTCAGCCGGTGGGTGGCGGGGATTAGGCGTGAAGCGGTTCAGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGGCAGAGGTTCTCGGACGCCCTCCGGCGAAGCCACCTGTTGATGCTTTTGACTTTCTGTCCTTGTTCCTCGTC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCATCTGGAGCATTTCCAATTCTGGTTTTGCGGAGCAGCAGGTCTGAGCTTGTCCGGCGAGGGTGGGAGTTGGT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CCCGGCGGAGATCCAGTGGGAAGAGCCGGCGGCTGCCCGGGCAACTCCCCCACTGGAAAGGATTCTGAAAGAAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGAAGTCAGCCCTCAGAAATGAAGTTGACTGCCTGCTGGCTTTCTGTTGACTGGCCCGGAGCTGTACTGCAAGA 2442
Query 1 -------------------------------ATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATA 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CCCTTGTGAGCTTCCCTAGTCTAAGAGTAGGATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATA 2516
Query 44 CAGATGAGAAGGAGATGCTGCTCTTTTTGTGCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGAC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CAGATGAGAAGGAGATGCTGCTCTTTTTGTGCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGAC 2590
Query 118 CTTCTGGATATTTTACGGGAAAGAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCG 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 CTTCTGGATATTTTACGGGAAAGAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCG 2664
Query 192 ATTTGACCTGCTCAAACGTATCTTGAAGATGGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACC 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 ATTTGACCTGCTCAAACGTATCTTGAAGATGGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACC 2738
Query 266 TTGTTTCGGACTATAGAGTGCTGATGGCAGAGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATT 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 TTGTTTCGGACTATAGAGTGCTGATGGCAGAGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATT 2812
Query 340 TTCCTCATGAAGGATTACATGGGCCGAGGCAAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 TTCCTCATGAAGGATTACATGGGCCGAGGCAAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTT 2886
Query 414 GGAGAAACTAAATCTGGTTGCCCCAGATCAACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAG 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 GGAGAAACTAAATCTGGTTGCCCCAGATCAACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAG 2960
Query 488 ACCTGAAGACAAAAATCCAGAAGTACAAGCAGTCTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAA 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 ACCTGAAGACAAAAATCCAGAAGTACAAGCAGTCTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAA 3034
Query 562 GCAGCAATCCAAAAGAGTCTCAAGGATCCTTCAAATAACTTCAGGCTCCATAATGGGAGAAGTAAAGAACAAAG 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 GCAGCAATCCAAAAGAGTCTCAAGGATCCTTCAAATAACTTCAGGCTCCATAATGGGAGAAGTAAAGAACAAAG 3108
Query 636 ACTTAAGGAACAGCTTGGCGCTCAACAAGAACCAGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTC 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 ACTTAAGGAACAGCTTGGCGCTCAACAAGAACCAGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTC 3182
Query 710 AGAGCATACCTGAAGAGAGATACAAGATGAAGAGCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGC 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 AGAGCATACCTGAAGAGAGATACAAGATGAAGAGCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGC 3256
Query 784 AATGAGAC------------------------------------------------------------------ 791
||||||||
Sbjct 3257 AATGAGACAGGTTGGAGTGCAATGGCGCAATCTCAGCTCACCGCAATCTCCACCTCCCAGGTTCAAGCGATTCT 3330
Query 792 -------------------------------------------------------------------------- 791
Sbjct 3331 CCTGCCTCAGCCTCCTGAGTAACTGGGATTACAGGCATGTGCCACCATGCCCAGCTAATTTTGTATTTTTAGTA 3404
Query 792 -------------------------------------------------------------------------- 791
Sbjct 3405 GAGACAAGGTTTCACCATGTCGGCCAGGCTGGTCTCGATCTCCTGACCTTGTGATCTGCCCACCTCAGCCTCCC 3478
Query 792 ---------------------------------------------------------AGAGCTTCTTCGAGACA 808
|||||||||||||||||
Sbjct 3479 AAAGTGCTACGATTACAGGCGTCAGCCATCATGCCTGGCTTATTCTCTCCATTTTCAAGAGCTTCTTCGAGACA 3552
Query 809 CCTTCACTTCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTTGGC 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 CCTTCACTTCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTTGGC 3626
Query 883 CAATTTGCCTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 CAATTTGCCTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCA 3700
Query 957 GAGTGTGTATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAGATT 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 GAGTGTGTATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAGATT 3774
Query 1031 CATGCCCTTATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTGGAG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 CATGCCCTTATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTGGAG 3848
Query 1105 GACAGCAGCCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCTGTG 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 GACAGCAGCCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCTGTG 3922
Query 1179 CACAGTTCACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTCACA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 CACAGTTCACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTCACA 3996
Query 1253 GCTCACCATCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGAAAACGCCCACTCCTGGATCTT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 GCTCACCATCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGAAAACGCCCACTCCTGGATCTT 4070
Query 1327 CACATTGAACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAGAAATATTATGTCTGGCT 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 CACATTGAACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAGAAATATTATGTCTGGCT 4144
Query 1401 GCAGCACACTCTGAGAAAGAAACTTATCCTCTCCTACACA---------------------------------- 1440
||||||||||||||||||||||||||||||||||||||||
Sbjct 4145 GCAGCACACTCTGAGAAAGAAACTTATCCTCTCCTACACATAAGAAACCAAAAGGCTGGGCGTAGTGGCTCACA 4218
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4219 CCTGTAATCCCAGCACTTTGGGAGGCCAAGGAGGGCAGATCACTTCAGGTCAGGAGTTCGAGACCAGCCTGGCC 4292
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4293 AACATGGTAAACGCTGTCCCTAGTAAAAATACAAAAATTAGCTGGGTGTGGGTGTGGGTACCTGTATTCCCAGT 4366
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4367 TACTTGGGAGGCTGAGGTGGGAGGATCTTTTGAACCCAGGAGTTCAGGGTCATAGCATGCTGTGATTGTGCCTA 4440
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4441 CGAATAGCCACTGCATACCAACCTGGGCAATATAGCAAGATCCCATCTCTTTAAAAAAAAAAAAAAAGGACAGG 4514
Query 1441 ----------------------------------------------- 1440
Sbjct 4515 AACTATCTTACTCAATGTATTAGTCATGTTTCTCTAGAGGGACAGAA 4561
